Wall clock time and date at job start Tue Mar 31 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36038 * 126.35290 * 90.02108 * 10 9 7 12 12 C 1.50698 * 124.94791 * 0.02562 * 11 10 9 13 13 O 1.42903 * 109.47053 * 89.99711 * 12 11 10 14 14 C 1.35952 * 116.99896 * 179.97438 * 13 12 11 15 15 C 1.38698 * 120.04426 * 359.72851 * 14 13 12 16 16 C 1.38156 * 119.96519 * 179.67415 * 15 14 13 17 17 C 1.38375 * 120.06267 * 0.61956 * 16 15 14 18 18 Cl 1.73602 * 119.95410 * 179.69575 * 17 16 15 19 19 C 1.38345 * 120.09454 * 359.67881 * 17 16 15 20 20 C 1.38251 * 120.03125 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 120.03568 * 180.02562 * 20 19 17 22 22 N 1.30109 * 110.10171 * 179.97438 * 11 10 9 23 23 C 1.35781 * 109.64476 * 0.02562 * 22 11 10 24 24 C 1.39746 * 133.60012 * 180.02562 * 23 22 11 25 25 C 1.36604 * 119.88530 * 179.97438 * 24 23 22 26 26 C 1.38781 * 120.66657 * 0.02562 * 25 24 23 27 27 C 1.37848 * 120.45535 * 0.02562 * 26 25 24 28 28 C 1.38058 * 126.34644 * 269.71068 * 10 9 7 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09000 * 109.47119 * 209.99686 * 12 11 10 33 33 H 1.09002 * 109.47388 * 330.00165 * 12 11 10 34 34 H 1.07995 * 120.01571 * 359.97438 * 15 14 13 35 35 H 1.07998 * 119.96584 * 180.31852 * 16 15 14 36 36 H 1.08006 * 119.98727 * 180.02562 * 19 17 16 37 37 H 1.07993 * 120.05565 * 359.93219 * 24 23 22 38 38 H 1.08000 * 119.66571 * 180.02562 * 25 24 23 39 39 H 1.08001 * 119.77152 * 179.97438 * 26 25 24 40 40 H 1.07999 * 120.15950 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.7264 -4.2307 1.0827 12 6 2.4115 -3.8706 2.5117 13 8 1.2882 -4.6325 2.9585 14 6 0.8715 -4.4266 4.2361 15 6 1.5340 -3.5144 5.0441 16 6 1.1050 -3.3014 6.3400 17 6 0.0231 -4.0067 6.8367 18 17 -0.5086 -3.7427 8.4681 19 6 -0.6357 -4.9218 6.0351 20 6 -0.2142 -5.1327 4.7354 21 17 -1.0412 -6.2804 3.7292 22 7 3.5378 -5.1788 0.7144 23 6 3.5907 -5.2334 -0.6412 24 6 4.2839 -6.0409 -1.5469 25 6 4.1254 -5.8486 -2.8900 26 6 3.2810 -4.8565 -3.3682 27 6 2.5879 -4.0474 -2.4934 28 6 2.7304 -4.2333 -1.1249 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 3.2739 -4.0917 3.1406 33 1 2.1781 -2.8077 2.5756 34 1 2.3816 -2.9673 4.6588 35 1 1.6176 -2.5874 6.9674 36 1 -1.4802 -5.4710 6.4245 37 1 4.9444 -6.8152 -1.1856 38 1 4.6625 -6.4750 -3.5868 39 1 3.1667 -4.7168 -4.4330 40 1 1.9318 -3.2770 -2.8708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012360413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:27 Heat of formation + Delta-G solvation = 32.779060 kcal Electronic energy + Delta-G solvation = -28265.030907 eV Core-core repulsion = 24096.897585 eV Total energy + Delta-G solvation = -4168.133322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.049 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.11691 -41.39066 -39.06565 -38.19038 -37.68660 -37.10465 -36.02793 -34.23923 -32.32121 -31.93048 -31.34017 -30.42657 -29.15352 -28.15204 -25.35665 -24.34429 -23.64471 -23.01839 -22.71228 -20.97025 -19.70749 -18.87275 -18.42144 -18.07192 -17.77863 -17.53279 -16.83177 -16.49981 -16.30428 -16.15557 -15.83530 -15.22149 -15.06061 -14.91003 -14.88108 -14.63557 -14.44102 -13.97174 -13.69424 -13.48909 -13.40223 -13.23266 -12.91341 -12.75130 -12.70674 -12.57020 -12.55310 -12.42205 -12.13221 -12.05415 -11.95970 -11.93355 -11.72813 -11.11624 -11.02107 -10.76580 -10.12751 -9.29310 -9.27084 -9.01169 -8.37878 -6.58004 -0.11085 -0.06086 -0.04197 0.67523 0.81134 1.19777 1.36790 1.38136 1.41574 1.46830 1.82924 2.29781 2.31033 2.34245 2.92541 2.97048 3.06037 3.47551 3.58752 3.68883 3.91135 3.96853 4.00633 4.13555 4.16698 4.21155 4.33783 4.48661 4.51140 4.55297 4.57332 4.80606 4.86097 4.93907 4.95435 4.97253 5.27094 5.34115 5.47454 5.60295 5.60834 5.71275 5.72534 5.97385 6.02933 6.17201 6.54318 6.86392 7.15221 8.68030 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007691 B = 0.003114 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3639.660407 B = 8989.096279 C =11429.595376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.055 0.945 9 C 0.257 3.743 10 N -0.459 5.459 11 C 0.258 3.742 12 C 0.149 3.851 13 O -0.313 6.313 14 C 0.132 3.868 15 C -0.185 4.185 16 C -0.054 4.054 17 C -0.067 4.067 18 Cl -0.051 7.051 19 C -0.061 4.061 20 C -0.075 4.075 21 Cl -0.058 7.058 22 N -0.502 5.502 23 C 0.010 3.990 24 C -0.076 4.076 25 C -0.120 4.120 26 C -0.096 4.096 27 C -0.125 4.125 28 C 0.027 3.973 29 H 0.274 0.726 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.144 0.856 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 -8.259 8.846 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.074 0.926 9 C 0.138 3.862 10 N -0.145 5.145 11 C -0.007 4.007 12 C 0.073 3.927 13 O -0.225 6.225 14 C 0.085 3.915 15 C -0.204 4.204 16 C -0.073 4.073 17 C -0.094 4.094 18 Cl -0.022 7.022 19 C -0.080 4.080 20 C -0.102 4.102 21 Cl -0.029 7.029 22 N -0.225 5.225 23 C -0.110 4.110 24 C -0.096 4.096 25 C -0.141 4.141 26 C -0.116 4.116 27 C -0.146 4.146 28 C -0.084 4.084 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.181 0.819 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.180 0.820 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.860 -8.740 9.320 13.093 hybrid contribution -0.649 1.606 -0.538 1.814 sum 2.210 -7.134 8.782 11.528 Atomic orbital electron populations 1.70012 1.07463 1.29025 1.48659 1.25701 0.95621 1.02585 0.93322 0.85473 0.78388 0.77819 0.79324 1.19749 1.20121 1.18740 1.21347 0.93184 0.90488 1.54538 0.92628 1.19283 0.86852 0.82075 0.98020 1.45849 1.35950 1.27938 1.04748 1.22920 0.94956 0.92334 0.90534 1.20992 0.89184 0.95890 0.86679 1.86171 1.47658 1.62410 1.26242 1.19029 0.93403 0.94951 0.84096 1.21480 1.03439 1.00588 0.94874 1.21243 0.93960 0.97519 0.94577 1.20674 0.99218 1.01407 0.88109 1.98377 1.89816 1.95784 1.18194 1.20878 1.00113 0.97256 0.89790 1.20157 0.97170 0.99442 0.93460 1.98377 1.77365 1.58211 1.68930 1.70240 1.21256 1.19273 1.11688 1.19584 1.01564 0.99565 0.90254 1.20302 0.98856 0.98390 0.92047 1.21040 0.99530 0.99006 0.94477 1.21283 0.95619 0.94457 1.00227 1.20303 1.03171 1.02121 0.88960 1.19464 1.00718 0.97642 0.90622 0.91698 0.94648 0.95703 0.85963 0.88791 0.81887 0.81205 0.81684 0.83790 0.81287 0.82044 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.77 13.29 21.45 0.28 -49.49 16 2 C 0.03 1.54 5.46 84.66 0.46 2.00 16 3 Si 0.97 40.54 29.54 68.60 2.03 42.56 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.56 -29.21 9.39 25.60 0.24 -28.96 16 8 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 9 C 0.26 13.00 5.48 85.64 0.47 13.47 16 10 N -0.46 -21.19 2.79 -509.64 -1.42 -22.61 16 11 C 0.26 10.89 7.48 137.92 1.03 11.92 16 12 C 0.15 5.12 4.81 71.24 0.34 5.46 16 13 O -0.31 -11.08 9.58 -93.01 -0.89 -11.97 16 14 C 0.13 3.91 6.68 22.52 0.15 4.06 16 15 C -0.18 -4.36 9.04 22.36 0.20 -4.16 16 16 C -0.05 -1.07 9.82 22.28 0.22 -0.85 16 17 C -0.07 -1.37 6.32 22.33 0.14 -1.22 16 18 Cl -0.05 -0.89 28.95 -2.72 -0.08 -0.97 16 19 C -0.06 -1.36 9.61 22.30 0.21 -1.15 16 20 C -0.07 -2.07 6.33 22.41 0.14 -1.93 16 21 Cl -0.06 -1.70 28.50 -2.72 -0.08 -1.77 16 22 N -0.50 -21.20 11.27 -179.96 -2.03 -23.22 16 23 C 0.01 0.42 7.23 39.45 0.29 0.71 16 24 C -0.08 -2.37 10.05 22.25 0.22 -2.15 16 25 C -0.12 -3.01 9.96 22.02 0.22 -2.79 16 26 C -0.10 -2.66 10.03 22.31 0.22 -2.44 16 27 C -0.12 -4.66 10.05 22.32 0.22 -4.44 16 28 C 0.03 1.17 6.88 38.86 0.27 1.44 16 29 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 30 H 0.04 1.87 7.61 -2.38 -0.02 1.85 16 31 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.12 3.40 7.65 -2.39 -0.02 3.38 16 33 H 0.09 3.29 7.18 -2.39 -0.02 3.28 16 34 H 0.16 3.31 6.30 -2.91 -0.02 3.30 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -65.05 381.21 3.97 -61.08 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.10 Total: 17.43 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.06 Total: -11.03 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -3.16 Total: -95.32 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.89 Total: -11.97 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.16 Total: -2.75 kcal Total: -65.05 3.97 -61.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012360413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.857 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds