Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 119.99761 * 2 1 4 4 H 1.48497 * 109.47089 * 269.99949 * 3 2 1 5 5 H 1.48499 * 109.46964 * 30.00313 * 3 2 1 6 6 H 1.48503 * 109.46868 * 149.99895 * 3 2 1 7 7 C 1.37870 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00106 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.38542 * 126.38103 * 90.00350 * 10 9 7 12 12 C 1.38652 * 133.88165 * 359.97438 * 11 10 9 13 13 C 1.37975 * 119.84956 * 180.02562 * 12 11 10 14 14 C 1.38698 * 120.43624 * 359.97438 * 13 12 11 15 15 C 1.37695 * 120.49633 * 0.03957 * 14 13 12 16 16 C 1.39724 * 119.77399 * 359.97438 * 15 14 13 17 17 N 1.35878 * 133.37243 * 180.02562 * 16 15 14 18 18 C 1.31047 * 109.61903 * 179.97438 * 17 16 15 19 19 S 1.76205 * 125.07516 * 180.02562 * 18 17 16 20 20 C 1.80995 * 100.00020 * 359.97421 * 19 18 17 21 21 C 1.50705 * 109.47086 * 180.02562 * 20 19 18 22 22 C 1.38452 * 120.02221 * 89.99687 * 21 20 19 23 23 F 1.35100 * 120.02183 * 359.97438 * 22 21 20 24 24 C 1.38455 * 119.96353 * 180.02562 * 22 21 20 25 25 C 1.38221 * 119.99584 * 359.97438 * 24 22 21 26 26 C 1.38203 * 120.04427 * 359.97438 * 25 24 22 27 27 C 1.38298 * 120.01368 * 269.72974 * 21 20 19 28 28 Cl 1.73599 * 120.00374 * 359.97438 * 27 21 20 29 29 H 0.97003 * 119.99997 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46635 * 59.99823 * 9 7 2 31 31 H 1.09000 * 109.47102 * 300.00250 * 9 7 2 32 32 H 1.07996 * 120.07402 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.78175 * 179.97438 * 13 12 11 34 34 H 1.08003 * 119.75690 * 180.02562 * 14 13 12 35 35 H 1.07996 * 120.10966 * 179.70266 * 15 14 13 36 36 H 1.09002 * 109.47307 * 299.99394 * 20 19 18 37 37 H 1.08993 * 109.47122 * 60.00407 * 20 19 18 38 38 H 1.07999 * 119.99923 * 179.97438 * 24 22 21 39 39 H 1.08007 * 119.97989 * 180.02562 * 25 24 22 40 40 H 1.08003 * 119.98326 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.7380 -4.2377 1.1129 12 6 2.5869 -4.0599 2.4797 13 6 3.2788 -4.8682 3.3580 14 6 4.1251 -5.8592 2.8831 15 6 4.2874 -6.0497 1.5291 16 6 3.5941 -5.2393 0.6264 17 7 3.5452 -5.1835 -0.7304 18 6 2.7283 -4.2288 -1.1024 19 16 2.3620 -3.8032 -2.7726 20 6 3.3947 -5.0112 -3.6385 21 6 3.2390 -4.8304 -5.1266 22 6 4.0782 -3.9680 -5.8112 23 9 5.0371 -3.2877 -5.1457 24 6 3.9337 -3.8024 -7.1782 25 6 2.9522 -4.4983 -7.8586 26 6 2.1151 -5.3600 -7.1755 27 6 2.2611 -5.5301 -5.8098 28 17 1.2131 -6.6174 -4.9536 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5566 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.9292 -3.2904 2.8559 33 1 3.1607 -4.7285 4.4224 34 1 4.6611 -6.4860 3.5804 35 1 4.9516 -6.8200 1.1661 36 1 4.4385 -4.8616 -3.3621 37 1 3.0860 -6.0189 -3.3604 38 1 4.5878 -3.1295 -7.7128 39 1 2.8400 -4.3692 -8.9251 40 1 1.3488 -5.9035 -7.7082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012551465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = 39.341253 kcal Electronic energy + Delta-G solvation = -28062.683753 eV Core-core repulsion = 23909.251485 eV Total energy + Delta-G solvation = -4153.432268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.051 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.08783 -41.28292 -39.50683 -36.71333 -36.66203 -34.18648 -33.21974 -32.33080 -30.72160 -29.85198 -28.95716 -27.36738 -27.17989 -23.40912 -23.21046 -23.10320 -22.05753 -21.42174 -20.00693 -18.03215 -17.12056 -17.04966 -16.86145 -16.48148 -16.11437 -16.01732 -15.79120 -14.99867 -14.78642 -14.73231 -14.52678 -13.97691 -13.87293 -13.51843 -13.47400 -13.32076 -13.15533 -12.91999 -12.53993 -12.11683 -11.94429 -11.68110 -11.59962 -11.55113 -11.46275 -11.21820 -11.06178 -10.96393 -10.85942 -10.47372 -10.32170 -10.20021 -9.48449 -9.33908 -9.05039 -8.96659 -8.70526 -8.56975 -7.51130 -6.99515 -6.32008 -4.40782 0.51351 0.71415 1.41041 1.66551 1.81875 2.07467 2.35225 3.17835 3.18921 3.21516 3.25464 3.31183 3.68479 3.94908 4.18939 4.25604 4.38028 4.43420 4.51548 4.85740 4.95441 5.02394 5.07510 5.20279 5.37681 5.46951 5.50857 5.69638 5.74068 5.77261 5.80439 5.86006 5.89566 5.96775 6.13855 6.38959 6.41044 6.76527 6.85623 6.94644 7.04334 7.25409 7.37529 7.57301 7.77383 7.78477 8.29905 8.64714 9.26904 10.75584 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.003577 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.251352 B = 7826.288553 C =10012.006517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.237 3.763 10 N -0.440 5.440 11 C 0.061 3.939 12 C -0.091 4.091 13 C -0.122 4.122 14 C -0.135 4.135 15 C -0.078 4.078 16 C 0.051 3.949 17 N -0.518 5.518 18 C 0.261 3.739 19 S 0.036 5.964 20 C -0.081 4.081 21 C -0.103 4.103 22 C 0.132 3.868 23 F -0.121 7.121 24 C -0.151 4.151 25 C -0.075 4.075 26 C -0.122 4.122 27 C 0.004 3.996 28 Cl -0.043 7.043 29 H 0.269 0.731 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -11.570 -11.898 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.118 3.882 10 N -0.126 5.126 11 C -0.052 4.052 12 C -0.112 4.112 13 C -0.142 4.142 14 C -0.155 4.155 15 C -0.099 4.099 16 C -0.072 4.072 17 N -0.244 5.244 18 C -0.113 4.113 19 S 0.270 5.730 20 C -0.229 4.229 21 C -0.106 4.106 22 C 0.111 3.889 23 F -0.099 7.099 24 C -0.170 4.170 25 C -0.094 4.094 26 C -0.141 4.141 27 C -0.024 4.024 28 Cl -0.013 7.013 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.056 -11.032 -12.758 17.347 hybrid contribution 0.790 0.714 1.359 1.727 sum 4.846 -10.318 -11.399 16.121 Atomic orbital electron populations 1.69919 1.06053 1.27798 1.48816 1.24897 0.94931 0.99435 0.94116 0.86378 0.79806 0.82139 0.78609 1.20073 1.20796 1.19584 1.21232 0.93682 0.89417 1.53464 0.91694 1.19840 0.86777 0.81544 0.99998 1.45988 1.36137 1.28077 1.02437 1.18983 0.99607 0.96890 0.89745 1.20057 1.01409 1.00540 0.89207 1.20738 0.98255 0.96512 0.98731 1.20719 1.00718 0.99620 0.94466 1.20069 0.99518 0.98846 0.91433 1.19042 1.00022 0.98026 0.90066 1.70860 1.21736 1.20682 1.11123 1.25065 0.97027 0.94497 0.94733 1.86096 1.56359 1.42685 0.87854 1.22383 1.05219 1.03946 0.91345 1.19182 0.97250 0.99229 0.94950 1.17339 0.88375 0.93025 0.90182 1.91576 1.60432 1.77265 1.80676 1.21266 1.01062 1.02431 0.92199 1.20992 0.93436 0.94499 1.00495 1.21114 1.00986 1.00190 0.91798 1.20608 0.93647 0.95513 0.92672 1.98411 1.64270 1.61528 1.77113 0.92154 0.92853 0.93161 0.85826 0.85957 0.86140 0.86222 0.87153 0.86785 0.83774 0.83846 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -14.71 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.24 6.01 5.69 -5.19 -0.03 5.98 16 10 N -0.44 -10.35 2.82 -115.61 -0.33 -10.67 16 11 C 0.06 1.35 6.87 -83.84 -0.58 0.77 16 12 C -0.09 -1.76 10.04 -39.52 -0.40 -2.16 16 13 C -0.12 -1.92 10.03 -39.51 -0.40 -2.32 16 14 C -0.13 -2.02 10.01 -39.61 -0.40 -2.42 16 15 C -0.08 -1.34 10.10 -39.23 -0.40 -1.74 16 16 C 0.05 1.07 7.22 -84.68 -0.61 0.46 16 17 N -0.52 -11.08 10.57 -10.90 -0.12 -11.20 16 18 C 0.26 5.73 7.93 -88.45 -0.70 5.03 16 19 S 0.04 0.68 21.53 -107.50 -2.31 -1.63 16 20 C -0.08 -1.24 4.71 36.01 0.17 -1.07 16 21 C -0.10 -1.34 5.14 -104.52 -0.54 -1.88 16 22 C 0.13 1.63 7.24 -39.42 -0.29 1.35 16 23 F -0.12 -1.71 16.48 2.25 0.04 -1.68 16 24 C -0.15 -1.37 10.03 -39.51 -0.40 -1.77 16 25 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 26 C -0.12 -1.05 9.83 -39.54 -0.39 -1.44 16 27 C 0.00 0.05 6.31 -39.50 -0.25 -0.20 16 28 Cl -0.04 -0.51 27.29 -51.86 -1.42 -1.92 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.05 1.40 7.68 -51.93 -0.40 1.00 16 31 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.11 1.75 7.64 -51.91 -0.40 1.35 16 37 H 0.11 1.73 6.89 -51.92 -0.36 1.37 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 40 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -30.70 381.76 -12.76 -43.46 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.08 Total: 1.45 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -6.01 Total: -15.61 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.30 Total: -45.87 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.31 Total: -1.63 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.70 -12.76 -43.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012551465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.799 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds