Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 119.99761 * 2 1 4 4 H 1.48497 * 109.47089 * 269.99949 * 3 2 1 5 5 H 1.48499 * 109.46964 * 30.00313 * 3 2 1 6 6 H 1.48503 * 109.46868 * 149.99895 * 3 2 1 7 7 C 1.37870 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00106 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.38542 * 126.38103 * 90.00350 * 10 9 7 12 12 C 1.38652 * 133.88165 * 359.97438 * 11 10 9 13 13 C 1.37975 * 119.84956 * 180.02562 * 12 11 10 14 14 C 1.38698 * 120.43624 * 359.97438 * 13 12 11 15 15 C 1.37695 * 120.49633 * 0.03957 * 14 13 12 16 16 C 1.39724 * 119.77399 * 359.97438 * 15 14 13 17 17 N 1.35878 * 133.37243 * 180.02562 * 16 15 14 18 18 C 1.31047 * 109.61903 * 179.97438 * 17 16 15 19 19 S 1.76205 * 125.07516 * 180.02562 * 18 17 16 20 20 C 1.80995 * 100.00020 * 359.97421 * 19 18 17 21 21 C 1.50705 * 109.47086 * 180.02562 * 20 19 18 22 22 C 1.38452 * 120.02221 * 89.99687 * 21 20 19 23 23 F 1.35100 * 120.02183 * 359.97438 * 22 21 20 24 24 C 1.38455 * 119.96353 * 180.02562 * 22 21 20 25 25 C 1.38221 * 119.99584 * 359.97438 * 24 22 21 26 26 C 1.38203 * 120.04427 * 359.97438 * 25 24 22 27 27 C 1.38298 * 120.01368 * 269.72974 * 21 20 19 28 28 Cl 1.73599 * 120.00374 * 359.97438 * 27 21 20 29 29 H 0.97003 * 119.99997 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46635 * 59.99823 * 9 7 2 31 31 H 1.09000 * 109.47102 * 300.00250 * 9 7 2 32 32 H 1.07996 * 120.07402 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.78175 * 179.97438 * 13 12 11 34 34 H 1.08003 * 119.75690 * 180.02562 * 14 13 12 35 35 H 1.07996 * 120.10966 * 179.70266 * 15 14 13 36 36 H 1.09002 * 109.47307 * 299.99394 * 20 19 18 37 37 H 1.08993 * 109.47122 * 60.00407 * 20 19 18 38 38 H 1.07999 * 119.99923 * 179.97438 * 24 22 21 39 39 H 1.08007 * 119.97989 * 180.02562 * 25 24 22 40 40 H 1.08003 * 119.98326 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.7380 -4.2377 1.1129 12 6 2.5869 -4.0599 2.4797 13 6 3.2788 -4.8682 3.3580 14 6 4.1251 -5.8592 2.8831 15 6 4.2874 -6.0497 1.5291 16 6 3.5941 -5.2393 0.6264 17 7 3.5452 -5.1835 -0.7304 18 6 2.7283 -4.2288 -1.1024 19 16 2.3620 -3.8032 -2.7726 20 6 3.3947 -5.0112 -3.6385 21 6 3.2390 -4.8304 -5.1266 22 6 4.0782 -3.9680 -5.8112 23 9 5.0371 -3.2877 -5.1457 24 6 3.9337 -3.8024 -7.1782 25 6 2.9522 -4.4983 -7.8586 26 6 2.1151 -5.3600 -7.1755 27 6 2.2611 -5.5301 -5.8098 28 17 1.2131 -6.6174 -4.9536 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5566 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.9292 -3.2904 2.8559 33 1 3.1607 -4.7285 4.4224 34 1 4.6611 -6.4860 3.5804 35 1 4.9516 -6.8200 1.1661 36 1 4.4385 -4.8616 -3.3621 37 1 3.0860 -6.0189 -3.3604 38 1 4.5878 -3.1295 -7.7128 39 1 2.8400 -4.3692 -8.9251 40 1 1.3488 -5.9035 -7.7082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012551465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = 25.792640 kcal Electronic energy + Delta-G solvation = -28063.271265 eV Core-core repulsion = 23909.251485 eV Total energy + Delta-G solvation = -4154.019780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.051 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.07659 -42.86348 -40.32212 -38.15089 -37.54145 -36.05331 -34.36495 -34.04426 -31.50319 -31.37501 -30.41105 -29.14512 -28.35138 -25.38964 -24.59183 -23.95221 -23.14586 -22.74670 -21.60142 -19.02564 -18.92045 -18.45329 -18.10226 -17.95887 -17.50964 -17.07188 -16.72602 -16.56840 -16.28678 -16.06487 -15.84138 -15.11915 -14.96484 -14.89642 -14.86570 -14.51615 -14.46524 -14.18861 -14.01084 -13.83889 -13.28546 -12.96216 -12.89874 -12.75188 -12.73926 -12.54508 -12.51071 -12.43247 -12.20240 -12.08193 -12.00642 -11.81236 -11.13971 -11.09801 -10.78861 -10.04535 -9.95084 -9.79251 -9.06992 -8.51669 -8.39512 -6.58272 -0.47011 -0.07685 -0.05933 0.32736 0.64223 0.95013 1.03253 1.32628 1.33460 1.44341 1.63642 1.98601 2.29969 2.40020 2.90202 2.93712 3.11411 3.19832 3.44007 3.50161 3.81740 4.02149 4.16132 4.17618 4.18863 4.21116 4.30589 4.42436 4.47156 4.52459 4.73658 4.77149 4.79597 4.89743 4.94949 5.05197 5.16042 5.29299 5.44761 5.54880 5.58061 5.64321 5.68153 5.69740 5.96365 6.02893 6.49762 6.69613 7.13292 8.66881 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.003577 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.251352 B = 7826.288553 C =10012.006517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.258 3.742 10 N -0.460 5.460 11 C 0.027 3.973 12 C -0.123 4.123 13 C -0.099 4.099 14 C -0.116 4.116 15 C -0.082 4.082 16 C 0.022 3.978 17 N -0.520 5.520 18 C 0.242 3.758 19 S 0.004 5.996 20 C -0.056 4.056 21 C -0.127 4.127 22 C 0.107 3.893 23 F -0.140 7.140 24 C -0.144 4.144 25 C -0.054 4.054 26 C -0.115 4.115 27 C -0.007 4.007 28 Cl -0.055 7.055 29 H 0.275 0.725 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.113 0.887 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 -12.196 -12.772 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.064 0.936 9 C 0.138 3.862 10 N -0.148 5.148 11 C -0.085 4.085 12 C -0.144 4.144 13 C -0.119 4.119 14 C -0.136 4.136 15 C -0.103 4.103 16 C -0.099 4.099 17 N -0.247 5.247 18 C -0.131 4.131 19 S 0.239 5.761 20 C -0.204 4.204 21 C -0.131 4.131 22 C 0.086 3.914 23 F -0.119 7.119 24 C -0.162 4.162 25 C -0.073 4.073 26 C -0.133 4.133 27 C -0.036 4.036 28 Cl -0.026 7.026 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.131 0.869 33 H 0.181 0.819 34 H 0.189 0.811 35 H 0.162 0.838 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.188 0.812 39 H 0.207 0.793 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.340 -11.687 -13.609 18.716 hybrid contribution 0.441 0.777 1.618 1.849 sum 5.781 -10.910 -11.990 17.211 Atomic orbital electron populations 1.69998 1.07252 1.28974 1.48961 1.25678 0.95756 1.02506 0.93321 0.85427 0.78448 0.78204 0.78937 1.19303 1.19281 1.19801 1.21280 0.92809 0.90781 1.54224 0.93587 1.19320 0.86792 0.82027 0.98062 1.45877 1.36832 1.28360 1.03772 1.19519 1.00689 0.97762 0.90499 1.20287 1.03186 1.02115 0.88807 1.21272 0.95862 0.94604 1.00158 1.21293 0.99292 0.98858 0.94206 1.20535 0.99126 0.98600 0.91991 1.19607 1.01099 0.99039 0.90180 1.70826 1.21534 1.20466 1.11840 1.25472 0.97477 0.94834 0.95355 1.86020 1.57801 1.45016 0.87303 1.22231 1.03187 1.02160 0.92826 1.19109 0.99250 1.01381 0.93359 1.17727 0.88534 0.93559 0.91616 1.91522 1.61230 1.77782 1.81350 1.21659 1.01530 1.02395 0.90647 1.21549 0.91224 0.92079 1.02414 1.21550 1.01392 0.99903 0.90453 1.20801 0.93323 0.95608 0.93828 1.98405 1.64569 1.61946 1.77712 0.91589 0.94647 0.95020 0.86879 0.81883 0.81093 0.83815 0.88471 0.87122 0.81198 0.79253 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.35 13.29 21.44 0.28 -52.07 16 2 C 0.03 1.62 5.46 84.65 0.46 2.08 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.55 -31.81 9.39 25.60 0.24 -31.57 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.26 14.09 5.69 85.63 0.49 14.58 16 10 N -0.46 -23.27 2.82 -519.67 -1.46 -24.74 16 11 C 0.03 1.25 6.87 38.72 0.27 1.52 16 12 C -0.12 -4.84 10.04 22.31 0.22 -4.62 16 13 C -0.10 -2.88 10.03 22.32 0.22 -2.66 16 14 C -0.12 -3.07 10.01 22.25 0.22 -2.84 16 15 C -0.08 -2.69 10.10 22.50 0.23 -2.47 16 16 C 0.02 0.96 7.22 39.42 0.28 1.24 16 17 N -0.52 -23.48 10.57 -188.40 -1.99 -25.47 16 18 C 0.24 11.41 7.93 179.59 1.42 12.84 16 19 S 0.00 0.17 21.53 -56.49 -1.22 -1.04 16 20 C -0.06 -1.85 4.71 71.24 0.34 -1.52 16 21 C -0.13 -3.43 5.14 -19.80 -0.10 -3.53 16 22 C 0.11 2.65 7.24 22.37 0.16 2.81 16 23 F -0.14 -4.15 16.48 44.97 0.74 -3.40 16 24 C -0.14 -2.27 10.03 22.32 0.22 -2.05 16 25 C -0.05 -0.59 10.04 22.26 0.22 -0.37 16 26 C -0.11 -1.67 9.83 22.30 0.22 -1.45 16 27 C -0.01 -0.15 6.31 22.32 0.14 -0.01 16 28 Cl -0.06 -1.35 27.29 -2.72 -0.07 -1.42 16 29 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.04 2.03 7.68 -2.39 -0.02 2.01 16 31 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 33 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.10 3.37 7.64 -2.39 -0.02 3.35 16 37 H 0.11 3.63 6.89 -2.40 -0.02 3.61 16 38 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -72.82 381.76 4.66 -68.15 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.09 Total: 12.06 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 5.27 Total: -18.00 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.17 Total: -102.27 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.74 Total: -3.40 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.22 Total: -1.04 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -72.82 4.66 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012551465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.944 kcal (2) G-P(sol) polarization free energy of solvation -72.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds