Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29784 * 126.20876 * 2 1 4 4 N 1.39444 * 111.42351 * 180.17716 * 3 2 1 5 5 C 1.40054 * 124.94426 * 179.78916 * 4 3 2 6 6 C 1.38870 * 120.06693 * 359.69495 * 5 4 3 7 7 C 1.38110 * 119.92757 * 180.02562 * 6 5 4 8 8 C 1.38285 * 120.07078 * 0.25928 * 7 6 5 9 9 C 1.38285 * 120.13672 * 359.48978 * 8 7 6 10 10 C 1.38110 * 120.07462 * 0.50773 * 9 8 7 11 11 C 1.34851 * 110.11472 * 359.52576 * 4 3 2 12 12 O 1.21870 * 127.01023 * 180.26437 * 11 4 3 13 13 C 1.47038 * 126.20722 * 179.67112 * 2 1 3 14 14 C 1.38468 * 127.55451 * 0.02562 * 13 2 1 15 15 C 1.46115 * 120.00366 * 171.63689 * 14 13 2 16 16 C 1.40425 * 120.11839 * 322.48529 * 15 14 13 17 17 C 1.36455 * 119.87098 * 179.73669 * 16 15 14 18 18 C 1.39403 * 120.12629 * 0.51437 * 17 16 15 19 19 N 1.38824 * 119.87647 * 179.73420 * 18 17 16 20 20 C 1.46502 * 119.99780 * 180.02562 * 19 18 17 21 21 C 1.46499 * 120.00277 * 0.02779 * 19 18 17 22 22 C 1.50692 * 109.47435 * 89.99463 * 21 19 18 23 23 H 1.08004 * 120.00106 * 0.02562 * 22 21 19 24 24 C 1.37885 * 120.00381 * 179.97438 * 22 21 19 25 25 N 1.31513 * 119.99372 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00476 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47374 * 89.99729 * 26 24 22 28 28 H 1.48493 * 109.47520 * 210.00351 * 26 24 22 29 29 H 1.48500 * 109.46890 * 330.00084 * 26 24 22 30 30 C 1.39398 * 120.24368 * 359.75997 * 18 17 16 31 31 C 1.36451 * 120.12460 * 359.97438 * 30 18 17 32 32 H 1.09007 * 109.47125 * 270.33087 * 1 2 3 33 33 H 1.08999 * 109.47317 * 30.33093 * 1 2 3 34 34 H 1.08999 * 109.47502 * 150.33023 * 1 2 3 35 35 H 1.08010 * 120.03844 * 0.04861 * 6 5 4 36 36 H 1.08010 * 119.96459 * 179.97438 * 7 6 5 37 37 H 1.07996 * 119.92911 * 179.74408 * 8 7 6 38 38 H 1.08002 * 119.95979 * 180.23823 * 9 8 7 39 39 H 1.07992 * 120.03654 * 179.77247 * 10 9 8 40 40 H 1.08000 * 120.00139 * 351.63469 * 14 13 2 41 41 H 1.08002 * 120.06266 * 359.97438 * 16 15 14 42 42 H 1.08009 * 119.93388 * 180.25084 * 17 16 15 43 43 H 1.08993 * 109.47506 * 90.00475 * 20 19 18 44 44 H 1.09005 * 109.47174 * 210.00330 * 20 19 18 45 45 H 1.09002 * 109.47263 * 330.00247 * 20 19 18 46 46 H 1.09000 * 109.47123 * 209.99731 * 21 19 18 47 47 H 1.09005 * 109.46799 * 329.99493 * 21 19 18 48 48 H 0.97001 * 120.00044 * 179.97438 * 25 24 22 49 49 H 1.08000 * 119.93639 * 179.97438 * 30 18 17 50 50 H 1.08007 * 120.06206 * 179.97438 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2737 1.0472 0.0000 4 7 3.6219 0.6913 -0.0040 5 6 4.6905 1.5966 -0.0093 6 6 4.4445 2.9634 -0.0172 7 6 5.5004 3.8535 -0.0229 8 6 6.8015 3.3851 -0.0261 9 6 7.0498 2.0248 -0.0130 10 6 5.9983 1.1294 -0.0072 11 6 3.7472 -0.6513 0.0037 12 8 4.7843 -1.2913 0.0074 13 6 2.3756 -1.1864 0.0068 14 6 1.9884 -2.5158 0.0140 15 6 2.9861 -3.5684 -0.1640 16 6 4.0552 -3.3825 -1.0553 17 6 4.9870 -4.3667 -1.2135 18 6 4.8733 -5.5592 -0.5004 19 7 5.8212 -6.5592 -0.6695 20 6 5.7040 -7.8136 0.0781 21 6 6.9388 -6.3601 -1.5955 22 6 8.0962 -5.7360 -0.8593 23 1 8.0082 -5.5107 0.1933 24 6 9.2678 -5.4537 -1.5292 25 7 9.3751 -5.7286 -2.8108 26 14 10.7027 -4.6809 -0.6165 27 1 11.5696 -5.7506 -0.0604 28 1 11.4915 -3.8417 -1.5539 29 1 10.1876 -3.8358 0.4906 30 6 3.8109 -5.7513 0.3814 31 6 2.8763 -4.7718 0.5515 32 1 -0.3634 0.0059 1.0277 33 1 -0.3634 0.8870 -0.5190 34 1 -0.3634 -0.8929 -0.5087 35 1 3.4285 3.3298 -0.0185 36 1 5.3098 4.9166 -0.0294 37 1 7.6255 4.0832 -0.0347 38 1 8.0671 1.6622 -0.0117 39 1 6.1928 0.0672 -0.0007 40 1 0.9489 -2.7748 0.1511 41 1 4.1418 -2.4609 -1.6116 42 1 5.8120 -4.2232 -1.8957 43 1 5.1150 -8.5266 -0.4987 44 1 6.6978 -8.2240 0.2573 45 1 5.2120 -7.6234 1.0320 46 1 7.2458 -7.3217 -2.0066 47 1 6.6262 -5.7015 -2.4060 48 1 10.1992 -5.5297 -3.2822 49 1 3.7274 -6.6772 0.9310 50 1 2.0533 -4.9219 1.2346 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012564771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = 116.942021 kcal Electronic energy + Delta-G solvation = -33174.399586 eV Core-core repulsion = 28941.024380 eV Total energy + Delta-G solvation = -4233.375206 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.45826 -39.25538 -38.74456 -37.27432 -36.18424 -34.24174 -32.88016 -31.96596 -30.90382 -30.82207 -30.50239 -28.69710 -27.96377 -27.60819 -25.82185 -24.40203 -22.99608 -22.65686 -22.07471 -21.56354 -20.34607 -19.68665 -19.14177 -17.72609 -16.95098 -16.57526 -16.24789 -15.95357 -15.58460 -15.28532 -15.14002 -14.60611 -14.44133 -14.29128 -14.12768 -13.94003 -13.75007 -13.61837 -13.45307 -13.24243 -13.13564 -12.90354 -12.80577 -12.69267 -12.29379 -12.24703 -11.89461 -11.81708 -11.58811 -11.46237 -11.33662 -11.12514 -11.02898 -10.94702 -10.78234 -10.56997 -10.32669 -10.00383 -9.94546 -9.42098 -9.39742 -8.93069 -8.65854 -8.56458 -8.42498 -7.80034 -6.59039 -6.11572 -4.24711 0.19821 1.21972 1.41958 2.00959 2.08887 2.34753 2.57237 3.18933 3.24310 3.31777 3.37645 3.89836 3.91089 3.92111 4.22473 4.35242 4.40529 4.80672 4.90942 4.95023 4.98014 5.15408 5.19529 5.21443 5.26065 5.28926 5.31901 5.40414 5.45062 5.56278 5.58328 5.70891 5.74023 5.80072 5.86810 5.88207 6.01439 6.08259 6.17029 6.22739 6.29714 6.37712 6.41744 6.48845 6.60196 6.60761 6.76755 6.82549 6.95884 7.08142 7.09886 7.22667 7.36969 7.65738 7.72603 7.98744 8.05258 8.06017 8.21617 8.82390 9.42691 10.89073 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.007203 B = 0.003199 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3886.120395 B = 8751.604552 C =12205.195033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.141 3.859 3 N -0.260 5.260 4 N -0.414 5.414 5 C 0.181 3.819 6 C -0.140 4.140 7 C -0.101 4.101 8 C -0.146 4.146 9 C -0.092 4.092 10 C -0.151 4.151 11 C 0.523 3.477 12 O -0.473 6.473 13 C -0.299 4.299 14 C 0.138 3.862 15 C -0.223 4.223 16 C 0.020 3.980 17 C -0.203 4.203 18 C 0.279 3.721 19 N -0.594 5.594 20 C 0.089 3.911 21 C 0.242 3.758 22 C -0.535 4.535 23 H 0.060 0.940 24 C 0.065 3.935 25 N -0.893 5.893 26 Si 0.897 3.103 27 H -0.280 1.280 28 H -0.284 1.284 29 H -0.271 1.271 30 C -0.240 4.240 31 C -0.020 4.020 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.156 0.844 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.040 0.960 48 H 0.265 0.735 49 H 0.120 0.880 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.838 9.736 5.562 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.068 5.068 4 N -0.222 5.222 5 C 0.088 3.912 6 C -0.160 4.160 7 C -0.120 4.120 8 C -0.165 4.165 9 C -0.111 4.111 10 C -0.172 4.172 11 C 0.316 3.684 12 O -0.347 6.347 13 C -0.306 4.306 14 C 0.115 3.885 15 C -0.226 4.226 16 C 0.000 4.000 17 C -0.226 4.226 18 C 0.166 3.834 19 N -0.293 5.293 20 C -0.055 4.055 21 C 0.123 3.877 22 C -0.574 4.574 23 H 0.079 0.921 24 C -0.138 4.138 25 N -0.532 5.532 26 Si 0.724 3.276 27 H -0.206 1.206 28 H -0.209 1.209 29 H -0.196 1.196 30 C -0.263 4.263 31 C -0.039 4.039 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.138 0.862 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.733 10.261 5.353 20.345 hybrid contribution 1.103 -0.245 0.521 1.244 sum -15.630 10.016 5.874 19.471 Atomic orbital electron populations 1.20353 0.85246 1.04282 1.03843 1.23970 0.96562 0.89198 0.94732 1.75889 0.87413 1.24696 1.18810 1.46513 1.02845 1.05722 1.67162 1.17609 0.84957 0.88634 0.99958 1.20808 1.00203 0.90756 1.04236 1.20942 0.92240 0.99205 0.99614 1.21139 0.96795 0.95634 1.02893 1.21056 0.98869 0.92854 0.98284 1.21607 0.90032 1.03018 1.02554 1.18974 0.90349 0.81504 0.77558 1.90927 1.33140 1.62815 1.47853 1.21464 0.93558 0.93979 1.21560 1.22818 0.98288 0.89543 0.77869 1.18454 1.00625 0.95597 1.07960 1.20812 0.89621 0.96014 0.93537 1.20580 1.02468 0.93583 1.05934 1.18315 0.86941 0.88193 0.89967 1.47268 1.25018 1.13397 1.43624 1.21640 1.02318 0.86026 0.95472 1.19466 0.82343 0.97794 0.88095 1.21487 0.97777 1.41487 0.96627 0.92131 1.24936 0.98665 0.95352 0.94868 1.69918 1.27461 1.47533 1.08247 0.86499 0.81951 0.79366 0.79780 1.20570 1.20940 1.19612 1.20268 0.98516 1.01637 1.05876 1.20612 0.96836 0.90916 0.95526 0.89382 0.89848 0.89616 0.85079 0.85756 0.86034 0.85353 0.82699 0.84267 0.86726 0.84590 0.93789 0.90870 0.92144 0.94708 0.94172 0.92511 0.86178 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.36 36.01 0.37 -0.11 16 2 C 0.14 1.64 7.47 -79.89 -0.60 1.04 16 3 N -0.26 -3.72 11.47 35.02 0.40 -3.32 16 4 N -0.41 -6.91 3.74 -10.79 -0.04 -6.95 16 5 C 0.18 2.96 6.67 -83.63 -0.56 2.40 16 6 C -0.14 -1.92 9.63 -39.39 -0.38 -2.30 16 7 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 8 C -0.15 -1.74 10.04 -39.55 -0.40 -2.14 16 9 C -0.09 -1.29 10.04 -39.61 -0.40 -1.68 16 10 C -0.15 -2.52 9.36 -39.39 -0.37 -2.89 16 11 C 0.52 9.23 7.19 -12.57 -0.09 9.14 16 12 O -0.47 -9.68 11.27 5.04 0.06 -9.62 16 13 C -0.30 -4.10 6.05 -102.59 -0.62 -4.72 16 14 C 0.14 1.60 9.79 -36.34 -0.36 1.24 16 15 C -0.22 -3.35 5.48 -105.09 -0.58 -3.92 16 16 C 0.02 0.36 7.02 -39.40 -0.28 0.08 16 17 C -0.20 -4.16 9.13 -39.79 -0.36 -4.52 16 18 C 0.28 5.41 6.55 -83.83 -0.55 4.86 16 19 N -0.59 -12.08 2.97 -180.96 -0.54 -12.62 16 20 C 0.09 1.44 10.17 59.85 0.61 2.05 16 21 C 0.24 5.90 4.89 -5.20 -0.03 5.88 16 22 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 23 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 26 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 30 C -0.24 -3.81 9.13 -39.79 -0.36 -4.17 16 31 C -0.02 -0.27 9.75 -39.40 -0.38 -0.66 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.13 1.67 7.64 -52.48 -0.40 1.27 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.16 2.94 5.37 -52.49 -0.28 2.65 16 40 H 0.14 0.94 8.01 -52.49 -0.42 0.52 16 41 H 0.11 2.14 6.18 -52.49 -0.32 1.81 16 42 H 0.14 3.12 6.10 -52.48 -0.32 2.80 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.06 0.84 6.16 -51.93 -0.32 0.53 16 46 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 47 H 0.04 1.04 6.16 -51.93 -0.32 0.72 16 48 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.12 1.64 6.10 -52.49 -0.32 1.32 16 50 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 415.96 15.07 6.27 6.27 Total: -1.00 -33.10 415.96 -10.75 -43.85 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.47 Total: 5.71 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -6.14 Total: -15.17 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.56 Total: -47.58 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.06 Total: -9.62 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.10 -10.75 -43.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012564771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.789 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds