Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38213 * 119.50707 * 2 1 4 4 N 1.31475 * 131.80032 * 359.97414 * 3 2 1 5 5 N 1.28531 * 109.91134 * 180.02562 * 4 3 2 6 6 C 1.30448 * 110.10387 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.42975 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46691 * 97.10182 * 7 6 5 9 9 C 1.38864 * 119.99616 * 180.02562 * 8 7 6 10 10 C 1.39567 * 119.84296 * 179.97438 * 9 8 7 11 11 C 1.36339 * 120.16137 * 179.72134 * 10 9 8 12 12 C 1.40889 * 119.83673 * 0.25353 * 11 10 9 13 13 C 1.41133 * 120.15798 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99643 * 334.75934 * 13 12 11 15 15 C 1.39857 * 120.00332 * 154.75236 * 13 12 11 16 16 N 1.30902 * 120.00045 * 342.66560 * 15 13 12 17 17 Si 1.86805 * 120.00238 * 162.65672 * 15 13 12 18 18 H 1.48502 * 109.47120 * 94.82137 * 17 15 13 19 19 H 1.48502 * 109.47233 * 214.82236 * 17 15 13 20 20 H 1.48503 * 109.47074 * 334.82363 * 17 15 13 21 21 C 1.40889 * 119.68615 * 359.97438 * 12 11 10 22 22 C 1.36334 * 119.83858 * 0.02562 * 21 12 11 23 23 N 1.36464 * 121.43661 * 180.27456 * 3 2 1 24 24 C 1.38907 * 120.93727 * 359.40197 * 23 3 2 25 25 C 1.38662 * 121.27863 * 180.31473 * 24 23 3 26 26 C 1.38062 * 119.86269 * 180.28606 * 25 24 23 27 27 C 1.38602 * 120.59251 * 359.95916 * 26 25 24 28 28 C 1.37897 * 120.35798 * 0.04137 * 27 26 25 29 29 C 1.39355 * 119.61012 * 359.97438 * 28 27 26 30 30 C 1.34939 * 119.50443 * 179.97438 * 2 1 3 31 31 O 1.21637 * 120.57394 * 0.04851 * 30 2 1 32 32 H 1.08997 * 109.47081 * 90.00185 * 1 2 3 33 33 H 1.09000 * 109.47287 * 210.00795 * 1 2 3 34 34 H 1.09006 * 109.47077 * 330.00125 * 1 2 3 35 35 H 1.08993 * 109.47112 * 337.10308 * 7 6 5 36 36 H 1.09002 * 109.46629 * 217.10319 * 7 6 5 37 37 H 0.96992 * 120.00708 * 0.02562 * 8 7 6 38 38 H 1.08000 * 119.91897 * 0.02562 * 10 9 8 39 39 H 1.07997 * 120.07951 * 180.28246 * 11 10 9 40 40 H 0.97007 * 120.00215 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.07736 * 180.02562 * 21 12 11 42 42 H 1.08002 * 119.92190 * 180.02562 * 22 21 12 43 43 H 1.07991 * 120.07003 * 0.28572 * 25 24 23 44 44 H 1.08007 * 119.69932 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.82255 * 180.02562 * 27 26 25 46 46 H 1.08006 * 120.19609 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1458 1.2029 0.0000 4 7 1.7244 2.4483 -0.0004 5 7 2.7288 3.2502 -0.0008 6 6 3.8436 2.5727 0.0000 7 6 5.2381 3.1440 0.0005 8 7 5.7540 3.1715 1.3713 9 6 7.0289 3.6606 1.6237 10 6 7.5169 3.6859 2.9310 11 6 8.7698 4.1594 3.1854 12 6 9.5704 4.6290 2.1254 13 6 10.8686 5.1202 2.3810 14 1 11.1128 5.5198 3.3542 15 6 11.8388 5.0894 1.3741 16 7 11.6730 4.3190 0.3289 17 14 13.3711 6.1477 1.5208 18 1 14.4699 5.3476 2.1188 19 1 13.7785 6.6184 0.1726 20 1 13.0829 7.3185 2.3877 21 6 9.0692 4.6049 0.8089 22 6 7.8145 4.1286 0.5693 23 7 3.5096 1.2488 -0.0056 24 6 4.2635 0.0821 0.0010 25 6 5.6496 0.1206 0.0019 26 6 6.3700 -1.0572 0.0025 27 6 5.7202 -2.2815 0.0030 28 6 4.3425 -2.3393 0.0021 29 6 3.6037 -1.1577 0.0012 30 6 2.1296 -1.1744 0.0005 31 8 1.5228 -2.2286 0.0001 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3634 -0.8899 0.5140 34 1 -0.3633 0.8900 0.5138 35 1 5.2156 4.1575 -0.3997 36 1 5.8853 2.5230 -0.6190 37 1 5.2051 2.8481 2.1027 38 1 6.9024 3.3248 3.7424 39 1 9.1479 4.1741 4.1969 40 1 12.3461 4.2973 -0.3693 41 1 9.6776 4.9630 -0.0085 42 1 7.4291 4.1091 -0.4395 43 1 6.1645 1.0698 0.0021 44 1 7.4495 -1.0241 0.0027 45 1 6.2961 -3.1951 0.0039 46 1 3.8389 -3.2948 0.0021 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012739780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 131.407106 kcal Electronic energy + Delta-G solvation = -32991.555603 eV Core-core repulsion = 28655.267306 eV Total energy + Delta-G solvation = -4336.288297 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.144 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -44.02497 -40.99483 -39.26323 -38.13540 -36.82439 -35.74590 -35.03796 -33.26470 -32.03854 -30.92128 -30.44643 -29.58610 -28.81125 -28.11243 -26.62902 -24.47579 -24.27319 -23.79322 -23.37077 -21.59984 -20.84387 -20.18558 -19.94609 -19.41911 -17.71948 -17.54582 -17.30680 -17.00903 -16.51648 -16.03157 -15.73958 -15.25031 -15.05940 -15.04082 -14.78278 -14.72041 -14.13223 -13.98781 -13.67876 -13.56342 -13.25234 -12.86470 -12.78577 -12.69493 -12.53774 -12.09323 -11.99415 -11.84133 -11.80362 -11.74304 -11.43985 -11.26600 -11.13624 -11.07833 -10.91616 -10.62523 -10.53682 -9.81420 -9.69377 -9.42654 -9.36785 -9.13126 -8.77305 -8.70654 -7.61490 -6.75016 -6.55739 -4.14642 0.02273 0.37995 1.32419 1.37575 2.01087 2.03333 2.48618 2.82250 2.99486 3.10220 3.14763 3.24723 3.25516 3.47194 3.61133 3.92692 3.98779 4.16411 4.25994 4.33655 4.52693 4.67104 4.69410 4.72702 4.82589 4.94070 4.96237 5.12069 5.22091 5.28873 5.50769 5.53992 5.62742 5.69789 5.73487 5.76584 5.89908 6.02515 6.13697 6.18550 6.20824 6.55576 6.70730 6.82170 7.08716 7.14959 7.24966 7.39002 7.56861 7.69331 8.04685 8.12855 8.19071 8.32903 8.46882 8.66845 8.96389 9.03240 10.27497 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.002172 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.301687 B =12889.453560 C =14018.689723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.509 5.509 3 C 0.407 3.593 4 N -0.291 5.291 5 N -0.237 5.237 6 C 0.188 3.812 7 C 0.222 3.778 8 N -0.757 5.757 9 C 0.084 3.916 10 C -0.148 4.148 11 C -0.187 4.187 12 C 0.079 3.921 13 C -0.465 4.465 14 H 0.073 0.927 15 C 0.075 3.925 16 N -0.806 5.806 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.125 4.125 22 C -0.161 4.161 23 N -0.430 5.430 24 C 0.166 3.834 25 C -0.132 4.132 26 C -0.051 4.051 27 C -0.129 4.129 28 C -0.030 4.030 29 C -0.164 4.164 30 C 0.568 3.432 31 O -0.498 6.498 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.387 0.613 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.277 0.723 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.143 0.857 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 -12.633 -4.025 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.238 5.238 3 C 0.054 3.946 4 N -0.138 5.138 5 N -0.075 5.075 6 C -0.078 4.078 7 C 0.095 3.905 8 N -0.396 5.396 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.208 4.208 12 C 0.076 3.924 13 C -0.495 4.495 14 H 0.091 0.909 15 C -0.140 4.140 16 N -0.433 5.433 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.145 4.145 22 C -0.183 4.183 23 N -0.121 5.121 24 C 0.069 3.931 25 C -0.152 4.152 26 C -0.070 4.070 27 C -0.147 4.147 28 C -0.049 4.049 29 C -0.169 4.169 30 C 0.359 3.641 31 O -0.371 6.371 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.220 0.780 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.107 0.893 43 H 0.177 0.823 44 H 0.166 0.834 45 H 0.161 0.839 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.798 -12.028 -4.452 19.582 hybrid contribution 1.286 -0.693 0.264 1.485 sum -13.511 -12.721 -4.188 19.024 Atomic orbital electron populations 1.22050 0.74390 1.05327 1.04156 1.44376 1.09152 1.01037 1.69243 1.21412 0.79562 0.90178 1.03475 1.74750 1.21634 0.93589 1.23794 1.74297 0.93838 1.23609 1.15715 1.24999 0.99602 0.77033 1.06145 1.19501 0.82099 1.00790 0.88108 1.43749 1.16029 1.75318 1.04487 1.17209 0.84845 1.05350 0.93719 1.19781 0.97102 1.06978 0.93156 1.20559 0.95287 1.06714 0.98206 1.17519 0.92825 0.90929 0.91083 1.19392 0.95032 1.36668 0.98452 0.90865 1.25795 0.99732 0.93924 0.94566 1.69835 1.34563 1.30286 1.08620 0.86402 0.81255 0.81112 0.78519 1.19826 1.20221 1.18616 1.20926 0.93467 1.02089 0.97988 1.20070 0.96127 1.06654 0.95403 1.43630 1.06407 1.06843 1.55206 1.17854 0.91952 0.82812 1.00442 1.21418 0.90360 1.01924 1.01488 1.21493 1.01508 0.91053 0.92957 1.21379 0.93874 0.98878 1.00581 1.21084 0.93716 0.96751 0.93346 1.19470 0.92272 0.92938 1.12216 1.18082 0.87352 0.82400 0.76271 1.90862 1.69485 1.28326 1.48460 0.90602 0.88657 0.88745 0.88715 0.90799 0.78015 0.89598 0.88944 0.91255 0.86269 0.89326 0.82301 0.83417 0.83885 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.35 59.85 0.62 1.30 16 2 N -0.51 -5.89 3.06 -125.28 -0.38 -6.27 16 3 C 0.41 5.44 8.29 -319.07 -2.64 2.79 16 4 N -0.29 -4.30 11.99 30.29 0.36 -3.94 16 5 N -0.24 -3.67 12.18 32.98 0.40 -3.26 16 6 C 0.19 2.60 7.49 -154.08 -1.15 1.45 16 7 C 0.22 3.02 4.37 -5.19 -0.02 2.99 16 8 N -0.76 -11.77 5.41 -59.67 -0.32 -12.09 16 9 C 0.08 1.64 6.67 -83.68 -0.56 1.08 16 10 C -0.15 -3.06 9.82 -39.77 -0.39 -3.45 16 11 C -0.19 -4.35 9.74 -39.26 -0.38 -4.73 16 12 C 0.08 2.01 5.57 -106.79 -0.59 1.42 16 13 C -0.46 -11.99 9.03 -37.88 -0.34 -12.33 16 14 H 0.07 1.84 7.90 -52.48 -0.41 1.42 16 15 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 16 N -0.81 -20.14 10.96 55.54 0.61 -19.53 16 17 Si 0.90 18.40 29.59 -169.99 -5.03 13.37 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.12 -3.01 8.63 -39.26 -0.34 -3.35 16 22 C -0.16 -3.35 9.23 -39.77 -0.37 -3.72 16 23 N -0.43 -5.64 3.01 -58.27 -0.18 -5.81 16 24 C 0.17 1.96 6.65 -83.67 -0.56 1.40 16 25 C -0.13 -1.44 9.46 -39.49 -0.37 -1.81 16 26 C -0.05 -0.44 10.02 -39.51 -0.40 -0.84 16 27 C -0.13 -0.94 10.03 -39.57 -0.40 -1.33 16 28 C -0.03 -0.26 9.65 -39.29 -0.38 -0.64 16 29 C -0.16 -1.82 5.88 -104.91 -0.62 -2.43 16 30 C 0.57 6.82 7.65 -12.45 -0.10 6.72 16 31 O -0.50 -6.51 16.10 5.24 0.08 -6.43 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.72 7.41 -51.93 -0.38 0.33 16 34 H 0.09 0.73 7.88 -51.93 -0.41 0.33 16 35 H 0.10 1.30 7.92 -51.93 -0.41 0.89 16 36 H 0.07 0.93 5.72 -51.93 -0.30 0.63 16 37 H 0.39 5.83 8.46 -40.82 -0.35 5.49 16 38 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 41 H 0.12 3.02 6.18 -52.48 -0.32 2.69 16 42 H 0.09 1.62 6.68 -52.49 -0.35 1.27 16 43 H 0.16 1.89 4.38 -52.49 -0.23 1.66 16 44 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 45 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.15 1.08 7.76 -52.48 -0.41 0.67 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -29.37 386.25 -12.53 -41.91 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -4.82 Total: 9.95 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -9.08 Total: -13.71 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.49 Total: -50.91 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: 0.08 Total: -6.43 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.37 -12.53 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012739780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.313 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds