Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99656 * 2 1 4 4 C 1.50702 * 109.47515 * 269.99559 * 3 2 1 5 5 H 1.08004 * 119.99425 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00456 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00089 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99759 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47148 * 90.00408 * 8 6 4 10 10 H 1.48508 * 109.46793 * 210.00295 * 8 6 4 11 11 H 1.48499 * 109.46995 * 329.99911 * 8 6 4 12 12 C 1.38902 * 120.00443 * 179.97438 * 2 1 3 13 13 C 1.39356 * 119.88575 * 0.02562 * 12 2 1 14 14 C 1.36507 * 120.11920 * 180.02562 * 13 12 2 15 15 C 1.40315 * 119.87842 * 359.97438 * 14 13 12 16 16 C 1.46336 * 120.10821 * 179.97438 * 15 14 13 17 17 C 1.37872 * 119.99739 * 150.83629 * 16 15 14 18 18 C 1.43200 * 120.00021 * 352.87797 * 17 16 15 19 19 N 6.08814 * 144.88517 * 212.89913 * 2 1 3 20 20 C 1.47084 * 120.00108 * 172.88018 * 17 16 15 21 21 O 1.21664 * 119.99808 * 359.97438 * 20 17 16 22 22 N 1.34771 * 120.00386 * 179.97438 * 20 17 16 23 23 C 1.46498 * 120.00474 * 179.97438 * 22 20 17 24 24 C 1.50696 * 109.47515 * 180.02562 * 23 22 20 25 25 C 1.38237 * 119.99709 * 269.72545 * 24 23 22 26 26 C 1.38232 * 120.00114 * 179.76660 * 25 24 23 27 27 C 1.38238 * 120.00045 * 0.50442 * 26 25 24 28 28 C 1.38243 * 119.99463 * 359.74980 * 27 26 25 29 29 C 1.38226 * 120.00428 * 89.99950 * 24 23 22 30 30 C 1.40315 * 119.77620 * 0.25826 * 15 14 13 31 31 C 1.36502 * 119.88018 * 359.46676 * 30 15 14 32 32 H 1.08999 * 109.47200 * 269.99707 * 1 2 3 33 33 H 1.09003 * 109.47171 * 30.00543 * 1 2 3 34 34 H 1.09002 * 109.46427 * 149.99631 * 1 2 3 35 35 H 1.09001 * 109.47579 * 29.99837 * 3 2 1 36 36 H 1.09006 * 109.47106 * 149.99856 * 3 2 1 37 37 H 0.96999 * 120.00337 * 179.97438 * 7 6 4 38 38 H 1.08004 * 119.93944 * 359.96858 * 13 12 2 39 39 H 1.07996 * 120.05999 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.00288 * 330.55774 * 16 15 14 41 41 H 0.97001 * 120.00094 * 359.97438 * 22 20 17 42 42 H 1.09001 * 109.47387 * 300.00086 * 23 22 20 43 43 H 1.09000 * 109.47308 * 59.99578 * 23 22 20 44 44 H 1.08003 * 120.00341 * 0.02562 * 25 24 23 45 45 H 1.08001 * 120.00327 * 180.23365 * 26 25 24 46 46 H 1.08000 * 120.00540 * 179.72820 * 27 26 25 47 47 H 1.07999 * 119.99622 * 179.97438 * 28 27 26 48 48 H 1.08004 * 119.99769 * 0.02562 * 29 24 23 49 49 H 1.08000 * 120.05682 * 179.72321 * 30 15 14 50 50 H 1.08000 * 119.94237 * 180.29675 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.3457 3.2574 -2.9126 8 14 3.7349 3.9281 -0.2529 9 1 5.1082 3.5060 0.1226 10 1 3.7506 5.3550 -0.6642 11 1 2.8291 3.7587 0.9116 12 6 2.1596 -1.2029 0.0005 13 6 1.4605 -2.4084 0.0005 14 6 2.1383 -3.5933 0.0016 15 6 3.5414 -3.5959 0.0021 16 6 4.2731 -4.8632 0.0038 17 6 5.5210 -4.9395 -0.5775 18 6 6.0367 -3.8254 -1.3148 19 7 6.4451 -2.9404 -1.9022 20 6 6.3225 -6.1651 -0.4404 21 8 5.8846 -7.1114 0.1864 22 7 7.5421 -6.2399 -1.0090 23 6 8.3407 -7.4604 -0.8720 24 6 9.6523 -7.2862 -1.5934 25 6 9.7626 -7.6464 -2.9235 26 6 10.9643 -7.4823 -3.5866 27 6 12.0586 -6.9676 -2.9169 28 6 11.9497 -6.6123 -1.5854 29 6 10.7465 -6.7717 -0.9237 30 6 4.2406 -2.3793 0.0071 31 6 3.5532 -1.2000 0.0003 32 1 -0.3633 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5139 34 1 -0.3632 -0.8900 -0.5139 35 1 1.6083 2.0285 0.5138 36 1 3.1499 1.1385 0.5139 37 1 3.8225 4.0833 -3.0899 38 1 0.3805 -2.4052 0.0006 39 1 1.5956 -4.5270 0.0012 40 1 3.8376 -5.7376 0.4644 41 1 7.8912 -5.4855 -1.5090 42 1 8.5302 -7.6540 0.1838 43 1 7.7970 -8.3007 -1.3035 44 1 8.9087 -8.0523 -3.4457 45 1 11.0494 -7.7602 -4.6268 46 1 12.9987 -6.8434 -3.4338 47 1 12.8048 -6.2106 -1.0621 48 1 10.6617 -6.4948 0.1168 49 1 5.3205 -2.3761 0.0120 50 1 4.0903 -0.2630 -0.0007 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013141400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = 77.966260 kcal Electronic energy + Delta-G solvation = -31443.690522 eV Core-core repulsion = 27208.625200 eV Total energy + Delta-G solvation = -4235.065322 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.23641 -39.57773 -39.15308 -37.05493 -35.90027 -35.16910 -33.32149 -32.62178 -31.72127 -31.27450 -31.03837 -29.39555 -28.48197 -26.77960 -25.58745 -23.69702 -22.95492 -22.50179 -21.92828 -21.42940 -21.11545 -20.04383 -18.73889 -17.31059 -17.08198 -16.82679 -16.32720 -15.88162 -15.67692 -15.52558 -15.16103 -14.95703 -14.70405 -14.49021 -14.30706 -13.91097 -13.85263 -13.77445 -13.52879 -13.32185 -13.26843 -13.08401 -12.89061 -12.77518 -12.68291 -12.50421 -12.30716 -12.21451 -11.83270 -11.61393 -11.47128 -11.41785 -11.40743 -11.16855 -10.76015 -10.50329 -10.34238 -10.22775 -9.96301 -9.61999 -9.35565 -9.28021 -9.19862 -8.78981 -8.74135 -8.73595 -6.66325 -6.24846 -4.27078 0.42566 0.86013 1.02836 1.84810 2.11192 2.69040 2.79375 3.02635 3.14457 3.20711 3.22978 3.54040 3.66371 3.73327 4.06970 4.22075 4.22667 4.27048 4.48089 4.63945 4.67803 4.76624 4.98833 5.02201 5.06071 5.11084 5.13992 5.15744 5.33196 5.37000 5.47240 5.59528 5.61606 5.66797 5.67044 5.75888 5.83195 5.94029 6.06120 6.07230 6.13608 6.14141 6.16076 6.20224 6.20859 6.48114 6.53446 6.60039 6.69007 6.74864 6.89047 7.14164 7.27703 7.37597 7.65051 7.70842 7.98290 8.04829 8.33544 8.80580 9.33030 10.87908 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.001865 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.709918 B =15006.704538 C =17075.447557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.590 5.590 3 C 0.214 3.786 4 C -0.542 4.542 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.274 3.726 13 C -0.229 4.229 14 C -0.018 4.018 15 C -0.213 4.213 16 C 0.116 3.884 17 C -0.186 4.186 18 C 0.249 3.751 19 N -0.416 5.416 20 C 0.583 3.417 21 O -0.542 6.542 22 N -0.727 5.727 23 C 0.163 3.837 24 C -0.111 4.111 25 C -0.100 4.100 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.122 4.122 29 C -0.100 4.100 30 C -0.030 4.030 31 C -0.196 4.196 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.153 0.847 41 H 0.402 0.598 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.119 0.881 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -21.830 5.689 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.289 5.289 3 C 0.093 3.907 4 C -0.580 4.580 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.526 5.526 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.190 1.190 12 C 0.162 3.838 13 C -0.252 4.252 14 C -0.038 4.038 15 C -0.216 4.216 16 C 0.092 3.908 17 C -0.194 4.194 18 C -0.064 4.064 19 N -0.093 5.093 20 C 0.372 3.628 21 O -0.421 6.421 22 N -0.378 5.378 23 C 0.040 3.960 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.140 4.140 29 C -0.119 4.119 30 C -0.050 4.050 31 C -0.218 4.218 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.171 0.829 41 H 0.237 0.763 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.136 0.864 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.750 -20.737 5.108 23.080 hybrid contribution 0.493 0.913 0.354 1.096 sum 9.243 -19.824 5.462 22.545 Atomic orbital electron populations 1.21675 0.80235 1.03056 1.00463 1.46891 1.05237 1.04456 1.72333 1.19841 0.92131 0.80314 0.98425 1.21357 1.37808 1.07672 0.91149 0.90451 1.24885 0.95185 0.97195 0.95553 1.69882 1.40599 1.23428 1.18682 0.86926 0.80045 0.80353 0.82884 1.19757 1.20744 1.18991 1.18272 0.91584 0.86168 0.87761 1.20353 0.99729 0.91072 1.14041 1.20706 0.92281 0.97491 0.93281 1.18536 0.93511 0.91803 1.17737 1.23076 0.88685 0.96242 0.82781 1.17869 0.98635 0.91324 1.11560 1.25553 0.94247 0.92999 0.93595 1.81484 1.08166 1.09130 1.10521 1.17562 0.80604 0.86246 0.78385 1.90811 1.71187 1.37919 1.42195 1.45937 1.17737 1.18105 1.56055 1.20186 0.87810 0.87553 1.00413 1.19908 0.95214 1.01325 0.94684 1.21148 0.97936 0.98947 0.93808 1.21195 0.93070 0.99680 1.00090 1.21252 0.98802 0.98274 0.94787 1.21196 0.97770 1.00143 0.94934 1.21144 0.92553 0.97997 1.00161 1.21060 0.99201 0.91398 0.93314 1.20566 0.92450 0.99153 1.09625 0.93627 0.90620 0.91789 0.94843 0.95108 0.92290 0.85757 0.85784 0.82935 0.76326 0.90303 0.90285 0.85695 0.85807 0.85946 0.85814 0.85707 0.86350 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.17 59.85 0.61 1.95 16 2 N -0.59 -11.24 2.97 -180.95 -0.54 -11.78 16 3 C 0.21 4.74 3.96 -5.19 -0.02 4.72 16 4 C -0.54 -14.57 9.94 -34.44 -0.34 -14.91 16 5 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 8 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 12 C 0.27 4.97 6.55 -83.82 -0.55 4.42 16 13 C -0.23 -3.38 9.13 -39.79 -0.36 -3.74 16 14 C -0.02 -0.24 9.75 -39.43 -0.38 -0.62 16 15 C -0.21 -2.97 5.59 -105.08 -0.59 -3.56 16 16 C 0.12 1.35 9.46 -36.46 -0.34 1.01 16 17 C -0.19 -2.33 5.84 -104.52 -0.61 -2.94 16 18 C 0.25 3.68 10.48 -22.41 -0.23 3.44 16 19 N -0.42 -7.23 17.93 41.92 0.75 -6.47 16 20 C 0.58 7.07 7.75 -12.68 -0.10 6.97 16 21 O -0.54 -7.60 16.30 5.22 0.09 -7.52 16 22 N -0.73 -7.47 5.50 -62.67 -0.34 -7.82 16 23 C 0.16 1.42 5.80 -5.20 -0.03 1.38 16 24 C -0.11 -0.91 5.25 -104.63 -0.55 -1.46 16 25 C -0.10 -0.78 9.70 -39.58 -0.38 -1.17 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.11 -0.81 10.05 -39.58 -0.40 -1.21 16 28 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 29 C -0.10 -0.79 9.70 -39.59 -0.38 -1.17 16 30 C -0.03 -0.50 8.26 -39.43 -0.33 -0.82 16 31 C -0.20 -3.70 9.13 -39.79 -0.36 -4.07 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.06 0.84 6.16 -51.93 -0.32 0.52 16 35 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 36 H 0.03 0.69 5.59 -51.93 -0.29 0.39 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.12 1.56 6.11 -52.48 -0.32 1.24 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.15 1.42 7.61 -52.49 -0.40 1.03 16 41 H 0.40 4.12 7.34 -40.82 -0.30 3.82 16 42 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 43 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 44 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 46 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 48 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.12 1.95 5.35 -52.49 -0.28 1.67 16 50 H 0.13 2.81 6.11 -52.49 -0.32 2.49 16 LS Contribution 425.46 15.07 6.41 6.41 Total: -1.00 -32.63 425.46 -10.19 -42.83 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.41 Total: 6.84 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -6.25 Total: -12.37 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.64 Total: -51.80 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -32.63 -10.19 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013141400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.793 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds