Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31489 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48497 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47190 * 299.99651 * 3 2 1 6 6 H 1.48502 * 109.47133 * 59.99999 * 3 2 1 7 7 C 1.38748 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00277 * 180.02562 * 7 2 1 9 9 O 1.34782 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.35577 * 116.99517 * 185.05848 * 9 7 2 11 11 C 1.39384 * 119.72122 * 174.40383 * 10 9 7 12 12 C 1.36561 * 120.14229 * 179.97438 * 11 10 9 13 13 C 1.39598 * 119.90061 * 0.08452 * 12 11 10 14 14 C 1.40441 * 120.50326 * 359.93810 * 13 12 11 15 15 C 1.38687 * 119.73249 * 354.42653 * 10 9 7 16 16 O 1.35085 * 109.70983 * 179.75328 * 14 13 12 17 17 C 1.35375 * 111.82611 * 0.42261 * 16 14 13 18 18 C 1.35720 * 126.21410 * 179.84719 * 17 16 14 19 19 C 1.46855 * 119.99981 * 359.69018 * 18 17 16 20 20 C 1.40106 * 120.20301 * 130.00163 * 19 18 17 21 21 Cl 1.73608 * 120.09921 * 0.02562 * 20 19 18 22 22 C 1.37986 * 119.79830 * 179.74822 * 20 19 18 23 23 C 1.38406 * 120.19914 * 0.24613 * 22 20 19 24 24 C 1.38402 * 120.41167 * 0.02711 * 23 22 20 25 25 C 1.37996 * 120.19978 * 359.97438 * 24 23 22 26 26 Cl 1.73598 * 120.10096 * 179.97438 * 25 24 23 27 27 C 1.47073 * 107.56854 * 359.58816 * 17 16 14 28 28 O 1.21889 * 127.73281 * 180.26478 * 27 17 16 29 29 H 0.96998 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.93435 * 0.02562 * 11 10 9 31 31 H 1.07994 * 120.04810 * 180.02562 * 12 11 10 32 32 H 1.08007 * 119.99606 * 359.97438 * 15 10 9 33 33 H 1.07994 * 119.99944 * 179.69297 * 18 17 16 34 34 H 1.07995 * 119.90243 * 180.22938 * 22 20 19 35 35 H 1.08005 * 119.79413 * 180.02562 * 23 22 20 36 36 H 1.07996 * 119.89964 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.7089 1.3462 0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3964 1.2125 7 6 2.0086 -1.2016 -0.0005 8 1 3.0885 -1.2017 -0.0001 9 8 1.3346 -2.3688 -0.0005 10 6 2.0690 -3.5035 0.1054 11 6 1.4259 -4.7339 0.2291 12 6 2.1571 -5.8823 0.3359 13 6 3.5518 -5.8229 0.3229 14 6 4.2117 -4.5893 0.1993 15 6 3.4539 -3.4304 0.0904 16 8 5.5483 -4.7839 0.2169 17 6 5.8646 -6.0947 0.3375 18 6 7.1166 -6.6166 0.3823 19 6 8.2848 -5.7315 0.2900 20 6 9.3217 -5.8330 1.2268 21 17 9.2310 -7.0072 2.5023 22 6 10.4180 -5.0007 1.1291 23 6 10.4927 -4.0643 0.1126 24 6 9.4707 -3.9529 -0.8140 25 6 8.3667 -4.7767 -0.7320 26 17 7.0859 -4.6344 -1.8952 27 6 4.6050 -6.8497 0.4175 28 8 4.4638 -8.0546 0.5360 29 1 -0.4850 0.8400 -0.0004 30 1 0.3468 -4.7794 0.2396 31 1 1.6573 -6.8348 0.4312 32 1 3.9430 -2.4723 -0.0058 33 1 7.2538 -7.6828 0.4858 34 1 11.2199 -5.0799 1.8480 35 1 11.3540 -3.4164 0.0421 36 1 9.5374 -3.2191 -1.6035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013787156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = -13.362984 kcal Electronic energy + Delta-G solvation = -27906.366327 eV Core-core repulsion = 23568.106290 eV Total energy + Delta-G solvation = -4338.260037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78033 -39.65090 -38.96191 -37.85924 -36.91739 -36.38360 -36.10405 -33.69916 -32.66717 -30.94404 -30.42527 -29.75347 -29.12881 -26.19224 -24.89200 -23.12746 -22.64230 -22.42028 -20.69463 -20.16799 -18.40296 -17.79958 -17.49059 -16.72027 -16.49806 -16.05480 -15.78081 -15.49802 -14.96317 -14.61044 -14.59016 -14.52347 -13.96414 -13.93554 -13.84946 -13.47541 -13.42413 -13.23762 -12.94895 -12.44804 -12.35911 -12.16869 -12.05845 -11.96303 -11.48067 -11.26274 -11.18784 -11.09600 -11.01042 -10.83983 -10.63241 -9.89036 -9.81307 -9.41600 -9.16973 -8.98701 -8.75822 -7.91387 -7.64499 -6.84247 -4.37982 0.13651 0.72451 0.95606 1.65010 1.84826 2.11175 2.13762 2.93119 2.95564 3.00168 3.03349 3.08649 3.23697 3.69321 3.83486 4.25364 4.44562 4.50766 4.64717 4.74107 4.83395 4.86554 5.06217 5.08399 5.23549 5.34798 5.43040 5.61822 5.74352 5.78071 5.87621 5.94123 6.00910 6.08300 6.21619 6.37166 6.61350 6.79182 6.89838 7.05024 7.12529 7.53138 7.61236 7.69181 8.59476 9.21323 10.30871 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.003011 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.857504 B = 9296.683617 C =10943.460455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.045 3.955 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.393 4.393 8 H 0.104 0.896 9 O -0.142 6.142 10 C 0.202 3.798 11 C -0.214 4.214 12 C 0.029 3.971 13 C -0.365 4.365 14 C 0.182 3.818 15 C -0.252 4.252 16 O -0.211 6.211 17 C 0.028 3.972 18 C -0.095 4.095 19 C -0.034 4.034 20 C -0.014 4.014 21 Cl -0.052 7.052 22 C -0.109 4.109 23 C -0.095 4.095 24 C -0.106 4.106 25 C -0.009 4.009 26 Cl -0.032 7.032 27 C 0.415 3.585 28 O -0.448 6.448 29 H 0.278 0.722 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.813 -6.831 0.065 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.121 0.879 9 O -0.040 6.040 10 C 0.142 3.858 11 C -0.233 4.233 12 C 0.010 3.990 13 C -0.368 4.368 14 C 0.137 3.863 15 C -0.272 4.272 16 O -0.119 6.119 17 C -0.018 4.018 18 C -0.114 4.114 19 C -0.036 4.036 20 C -0.042 4.042 21 Cl -0.023 7.023 22 C -0.128 4.128 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.037 4.037 26 Cl -0.003 7.003 27 C 0.298 3.702 28 O -0.328 6.328 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.279 -7.068 0.088 19.598 hybrid contribution 0.355 0.805 0.014 0.880 sum 18.634 -6.263 0.102 19.659 Atomic orbital electron populations 1.70006 1.06279 1.28755 1.42012 1.25484 0.95953 0.99399 0.95481 0.85542 0.79424 0.79320 0.78699 1.18558 1.19651 1.19640 1.21689 0.92488 0.80267 1.52303 0.87912 1.83943 1.34786 1.11928 1.73380 1.19068 0.88775 0.87955 0.89967 1.19926 1.00248 0.89626 1.13499 1.19827 0.90365 0.97554 0.91255 1.20229 0.95255 0.94095 1.27214 1.19218 0.80181 0.94694 0.92160 1.19900 0.92311 0.96373 1.18638 1.84505 1.22348 1.23526 1.81475 1.22044 0.95618 0.83713 1.00464 1.21303 0.86818 0.99251 1.04077 1.18455 0.94399 0.96432 0.94314 1.20939 0.95841 0.95291 0.92082 1.98391 1.98240 1.56666 1.48978 1.21051 0.97081 0.95250 0.99445 1.21154 0.98723 0.97825 0.93622 1.21117 0.92303 0.98822 1.00282 1.21119 0.91902 0.97331 0.93326 1.98433 1.48854 1.96899 1.56106 1.20485 0.87763 0.88230 0.73694 1.90655 1.87132 1.14745 1.40288 0.91203 0.85069 0.85647 0.84061 0.81668 0.84173 0.84074 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.33 13.67 55.48 0.76 -21.57 16 2 C 0.05 1.12 5.49 -17.51 -0.10 1.03 16 3 Si 0.95 18.63 29.55 -169.99 -5.02 13.61 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.39 -9.94 9.48 30.92 0.29 -9.64 16 8 H 0.10 2.41 5.17 -52.49 -0.27 2.14 16 9 O -0.14 -3.65 9.74 0.72 0.01 -3.64 16 10 C 0.20 4.48 6.65 -38.99 -0.26 4.22 16 11 C -0.21 -4.18 9.93 -39.76 -0.39 -4.58 16 12 C 0.03 0.52 10.04 -39.68 -0.40 0.13 16 13 C -0.37 -7.01 6.34 -104.83 -0.66 -7.67 16 14 C 0.18 3.57 7.28 -38.51 -0.28 3.29 16 15 C -0.25 -5.29 9.18 -39.17 -0.36 -5.65 16 16 O -0.21 -3.78 7.52 0.46 0.00 -3.78 16 17 C 0.03 0.46 5.88 -36.90 -0.22 0.24 16 18 C -0.10 -1.33 8.45 -37.00 -0.31 -1.64 16 19 C -0.03 -0.44 5.55 -105.01 -0.58 -1.02 16 20 C -0.01 -0.16 6.36 -38.97 -0.25 -0.41 16 21 Cl -0.05 -0.55 28.05 -51.86 -1.45 -2.00 16 22 C -0.11 -0.94 9.81 -39.61 -0.39 -1.33 16 23 C -0.09 -0.74 10.04 -39.46 -0.40 -1.14 16 24 C -0.11 -1.03 9.81 -39.61 -0.39 -1.42 16 25 C -0.01 -0.12 6.04 -38.97 -0.24 -0.35 16 26 Cl -0.03 -0.46 24.84 -51.86 -1.29 -1.74 16 27 C 0.41 7.61 7.80 -32.27 -0.25 7.36 16 28 O -0.45 -8.69 18.07 5.02 0.09 -8.60 16 29 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.13 2.37 8.06 -52.48 -0.42 1.94 16 31 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 32 H 0.14 2.94 5.59 -52.48 -0.29 2.65 16 33 H 0.17 2.05 8.05 -52.49 -0.42 1.63 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -28.57 354.29 -8.98 -37.55 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -2.24 Total: 3.41 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -5.18 Total: -18.58 kcal Atomic # 7 Polarization: -22.33 SS G_CDS: 0.76 Total: -21.57 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.10 Total: -16.01 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -2.74 Total: -3.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.57 -8.98 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013787156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.192 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds