Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31489 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48497 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47190 * 299.99651 * 3 2 1 6 6 H 1.48502 * 109.47133 * 59.99999 * 3 2 1 7 7 C 1.38748 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00277 * 180.02562 * 7 2 1 9 9 O 1.34782 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.35577 * 116.99517 * 185.05848 * 9 7 2 11 11 C 1.39384 * 119.72122 * 174.40383 * 10 9 7 12 12 C 1.36561 * 120.14229 * 179.97438 * 11 10 9 13 13 C 1.39598 * 119.90061 * 0.08452 * 12 11 10 14 14 C 1.40441 * 120.50326 * 359.93810 * 13 12 11 15 15 C 1.38687 * 119.73249 * 354.42653 * 10 9 7 16 16 O 1.35085 * 109.70983 * 179.75328 * 14 13 12 17 17 C 1.35375 * 111.82611 * 0.42261 * 16 14 13 18 18 C 1.35720 * 126.21410 * 179.84719 * 17 16 14 19 19 C 1.46855 * 119.99981 * 359.69018 * 18 17 16 20 20 C 1.40106 * 120.20301 * 130.00163 * 19 18 17 21 21 Cl 1.73608 * 120.09921 * 0.02562 * 20 19 18 22 22 C 1.37986 * 119.79830 * 179.74822 * 20 19 18 23 23 C 1.38406 * 120.19914 * 0.24613 * 22 20 19 24 24 C 1.38402 * 120.41167 * 0.02711 * 23 22 20 25 25 C 1.37996 * 120.19978 * 359.97438 * 24 23 22 26 26 Cl 1.73598 * 120.10096 * 179.97438 * 25 24 23 27 27 C 1.47073 * 107.56854 * 359.58816 * 17 16 14 28 28 O 1.21889 * 127.73281 * 180.26478 * 27 17 16 29 29 H 0.96998 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.93435 * 0.02562 * 11 10 9 31 31 H 1.07994 * 120.04810 * 180.02562 * 12 11 10 32 32 H 1.08007 * 119.99606 * 359.97438 * 15 10 9 33 33 H 1.07994 * 119.99944 * 179.69297 * 18 17 16 34 34 H 1.07995 * 119.90243 * 180.22938 * 22 20 19 35 35 H 1.08005 * 119.79413 * 180.02562 * 23 22 20 36 36 H 1.07996 * 119.89964 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.7089 1.3462 0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3964 1.2125 7 6 2.0086 -1.2016 -0.0005 8 1 3.0885 -1.2017 -0.0001 9 8 1.3346 -2.3688 -0.0005 10 6 2.0690 -3.5035 0.1054 11 6 1.4259 -4.7339 0.2291 12 6 2.1571 -5.8823 0.3359 13 6 3.5518 -5.8229 0.3229 14 6 4.2117 -4.5893 0.1993 15 6 3.4539 -3.4304 0.0904 16 8 5.5483 -4.7839 0.2169 17 6 5.8646 -6.0947 0.3375 18 6 7.1166 -6.6166 0.3823 19 6 8.2848 -5.7315 0.2900 20 6 9.3217 -5.8330 1.2268 21 17 9.2310 -7.0072 2.5023 22 6 10.4180 -5.0007 1.1291 23 6 10.4927 -4.0643 0.1126 24 6 9.4707 -3.9529 -0.8140 25 6 8.3667 -4.7767 -0.7320 26 17 7.0859 -4.6344 -1.8952 27 6 4.6050 -6.8497 0.4175 28 8 4.4638 -8.0546 0.5360 29 1 -0.4850 0.8400 -0.0004 30 1 0.3468 -4.7794 0.2396 31 1 1.6573 -6.8348 0.4312 32 1 3.9430 -2.4723 -0.0058 33 1 7.2538 -7.6828 0.4858 34 1 11.2199 -5.0799 1.8480 35 1 11.3540 -3.4164 0.0421 36 1 9.5374 -3.2191 -1.6035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013787156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = -26.808198 kcal Electronic energy + Delta-G solvation = -27906.949355 eV Core-core repulsion = 23568.106290 eV Total energy + Delta-G solvation = -4338.843065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 376.010 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.21846 -40.75146 -40.38954 -39.35299 -37.82875 -37.68990 -37.29332 -34.81536 -34.41942 -31.89050 -31.72243 -31.30579 -30.35863 -27.87582 -26.26979 -24.28766 -23.72317 -23.69213 -22.12648 -21.57197 -20.00888 -19.34146 -18.63037 -18.04291 -17.66927 -17.45533 -16.94636 -16.78200 -16.23494 -15.98717 -15.90487 -15.71042 -15.45230 -15.39933 -14.97983 -14.88033 -14.79083 -14.57640 -14.29990 -13.77905 -13.63741 -13.36527 -13.23346 -13.05666 -12.79690 -12.62177 -12.55448 -12.12294 -12.11715 -12.02127 -11.93164 -11.58034 -11.03921 -10.94097 -10.85231 -9.94547 -9.80628 -9.39122 -9.20631 -8.62482 -6.29093 -1.10161 -0.12408 -0.06328 0.33341 0.64842 0.77777 1.21818 1.35703 1.42102 1.53600 1.58483 1.72330 2.10358 2.33882 2.55848 2.62460 2.98034 3.20186 3.45276 3.56199 3.72863 3.77123 3.82804 4.09854 4.15757 4.19198 4.32495 4.38457 4.44005 4.58846 4.63001 4.78728 4.93797 4.98186 5.05384 5.14640 5.16242 5.31121 5.39410 5.51620 5.59043 5.84555 6.01228 6.21044 6.80710 7.47520 8.57882 Molecular weight = 376.01amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.003011 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.857504 B = 9296.683617 C =10943.460455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.007 4.007 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.421 4.421 8 H 0.110 0.890 9 O -0.189 6.189 10 C 0.190 3.810 11 C -0.218 4.218 12 C 0.038 3.962 13 C -0.365 4.365 14 C 0.187 3.813 15 C -0.262 4.262 16 O -0.209 6.209 17 C -0.014 4.014 18 C -0.042 4.042 19 C -0.071 4.071 20 C -0.018 4.018 21 Cl -0.052 7.052 22 C -0.104 4.104 23 C -0.073 4.073 24 C -0.110 4.110 25 C -0.023 4.023 26 Cl -0.058 7.058 27 C 0.421 3.579 28 O -0.460 6.460 29 H 0.280 0.720 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.183 0.817 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.124 -7.631 0.603 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.208 4.208 3 Si 0.835 3.165 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.496 4.496 8 H 0.127 0.873 9 O -0.091 6.091 10 C 0.134 3.866 11 C -0.237 4.237 12 C 0.020 3.980 13 C -0.368 4.368 14 C 0.141 3.859 15 C -0.282 4.282 16 O -0.117 6.117 17 C -0.059 4.059 18 C -0.061 4.061 19 C -0.072 4.072 20 C -0.045 4.045 21 Cl -0.023 7.023 22 C -0.123 4.123 23 C -0.091 4.091 24 C -0.129 4.129 25 C -0.050 4.050 26 Cl -0.028 7.028 27 C 0.305 3.695 28 O -0.341 6.341 29 H 0.090 0.910 30 H 0.162 0.838 31 H 0.176 0.824 32 H 0.154 0.846 33 H 0.198 0.802 34 H 0.188 0.812 35 H 0.200 0.800 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 22.634 -7.930 0.630 23.991 hybrid contribution -0.485 0.591 -0.105 0.771 sum 22.149 -7.339 0.525 23.339 Atomic orbital electron populations 1.70117 1.08050 1.29674 1.45483 1.26627 0.96793 1.02712 0.94717 0.84554 0.78444 0.74572 0.78907 1.17389 1.18970 1.19018 1.22046 0.92995 0.80782 1.53763 0.87290 1.83944 1.35740 1.12692 1.76691 1.19528 0.89492 0.88185 0.89389 1.20173 1.01148 0.89130 1.13244 1.20180 0.90103 0.98354 0.89386 1.20677 0.96051 0.94566 1.25506 1.19169 0.81239 0.94262 0.91244 1.19867 0.92175 0.96832 1.19350 1.84502 1.20966 1.24403 1.81781 1.21923 0.95715 0.82765 1.05518 1.21767 0.86575 1.00220 0.97561 1.18491 0.94885 0.97661 0.96194 1.21091 0.95939 0.95750 0.91686 1.98399 1.98267 1.56741 1.48853 1.21486 0.96750 0.94118 0.99904 1.21670 0.98827 0.96947 0.91638 1.21460 0.91748 0.98451 1.01243 1.21312 0.92278 0.98174 0.93249 1.98427 1.50260 1.97044 1.57105 1.20502 0.88248 0.87863 0.72864 1.90650 1.87444 1.14989 1.41003 0.91038 0.83820 0.82428 0.84556 0.80151 0.81194 0.79973 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.65 13.67 21.63 0.30 -50.35 16 2 C -0.01 -0.37 5.49 84.87 0.47 0.10 16 3 Si 1.02 39.34 29.55 68.60 2.03 41.37 16 4 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 5 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 7 C -0.42 -22.53 9.48 67.94 0.64 -21.89 16 8 H 0.11 5.40 5.17 -2.91 -0.02 5.38 16 9 O -0.19 -10.33 9.74 -20.36 -0.20 -10.53 16 10 C 0.19 8.82 6.65 22.65 0.15 8.97 16 11 C -0.22 -8.66 9.93 22.15 0.22 -8.44 16 12 C 0.04 1.35 10.04 22.21 0.22 1.58 16 13 C -0.37 -13.81 6.34 -20.00 -0.13 -13.93 16 14 C 0.19 7.35 7.28 22.96 0.17 7.51 16 15 C -0.26 -11.38 9.18 22.53 0.21 -11.17 16 16 O -0.21 -7.40 7.52 -21.28 -0.16 -7.56 16 17 C -0.01 -0.46 5.88 24.01 0.14 -0.32 16 18 C -0.04 -1.10 8.45 23.94 0.20 -0.89 16 19 C -0.07 -1.63 5.55 -20.12 -0.11 -1.74 16 20 C -0.02 -0.33 6.36 22.66 0.14 -0.18 16 21 Cl -0.05 -0.95 28.05 -2.72 -0.08 -1.02 16 22 C -0.10 -1.30 9.81 22.25 0.22 -1.08 16 23 C -0.07 -0.77 10.04 22.35 0.22 -0.54 16 24 C -0.11 -1.75 9.81 22.25 0.22 -1.53 16 25 C -0.02 -0.52 6.04 22.67 0.14 -0.39 16 26 Cl -0.06 -1.58 24.84 -2.72 -0.07 -1.65 16 27 C 0.42 14.98 7.80 27.00 0.21 15.19 16 28 O -0.46 -17.13 18.07 -4.95 -0.09 -17.22 16 29 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.14 5.27 8.06 -2.91 -0.02 5.25 16 31 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 32 H 0.14 5.96 5.59 -2.91 -0.02 5.94 16 33 H 0.18 4.04 8.05 -2.91 -0.02 4.02 16 34 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 35 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -66.36 354.29 6.24 -60.11 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.18 Total: 15.60 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 3.34 Total: -28.76 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.30 Total: -50.35 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.45 Total: -35.31 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.14 Total: -2.67 kcal Total: -66.36 6.24 -60.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013787156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.303 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds