Wall clock time and date at job start Tue Mar 31 2020 06:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47480 * 2 1 4 4 N 1.46502 * 109.47446 * 120.00361 * 2 1 3 5 5 C 1.38858 * 119.99827 * 274.99948 * 4 2 1 6 6 C 1.39567 * 119.84194 * 359.72923 * 5 4 2 7 7 C 1.36343 * 120.16086 * 179.71776 * 6 5 4 8 8 C 1.40888 * 119.83327 * 0.54969 * 7 6 5 9 9 C 1.41134 * 120.15294 * 179.69670 * 8 7 6 10 10 H 1.08002 * 120.00197 * 214.79012 * 9 8 7 11 11 C 1.39869 * 119.99857 * 34.79814 * 9 8 7 12 12 N 1.30897 * 120.00058 * 355.59675 * 11 9 8 13 13 Si 1.86802 * 119.99837 * 175.59200 * 11 9 8 14 14 H 1.48498 * 109.46961 * 60.00295 * 13 11 9 15 15 H 1.48497 * 109.47246 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47270 * 300.00234 * 13 11 9 17 17 C 1.40887 * 119.69176 * 359.72147 * 8 7 6 18 18 C 1.36349 * 119.83467 * 359.97438 * 17 8 7 19 19 C 1.50705 * 109.46997 * 240.00056 * 2 1 3 20 20 O 1.21293 * 120.00108 * 239.99905 * 19 2 1 21 21 N 1.34778 * 119.99870 * 60.00127 * 19 2 1 22 22 C 1.40110 * 119.99843 * 184.31938 * 21 19 2 23 23 C 1.38845 * 120.01388 * 144.83811 * 22 21 19 24 24 C 1.38080 * 119.98641 * 180.25244 * 23 22 21 25 25 C 1.38728 * 120.01424 * 359.44700 * 24 23 22 26 26 O 1.35968 * 119.98972 * 180.25095 * 25 24 23 27 27 C 1.42909 * 116.99716 * 0.30305 * 26 25 24 28 28 F 1.39901 * 109.46734 * 299.99835 * 27 26 25 29 29 F 1.39899 * 109.46981 * 59.99688 * 27 26 25 30 30 C 1.38722 * 120.02811 * 0.55283 * 25 24 23 31 31 C 1.38091 * 120.01328 * 359.72472 * 30 25 24 32 32 H 1.08999 * 109.47041 * 299.99514 * 1 2 3 33 33 H 1.08995 * 109.46836 * 59.99728 * 1 2 3 34 34 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 35 35 H 0.96999 * 119.99820 * 94.99424 * 4 2 1 36 36 H 1.08004 * 119.92191 * 359.97123 * 6 5 4 37 37 H 1.08000 * 120.08118 * 180.27230 * 7 6 5 38 38 H 0.97004 * 120.00168 * 180.02562 * 12 11 9 39 39 H 1.07991 * 120.08210 * 180.02562 * 17 8 7 40 40 H 1.07997 * 119.91624 * 179.97438 * 18 17 8 41 41 H 0.97000 * 120.00088 * 4.31874 * 21 19 2 42 42 H 1.08003 * 120.00712 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.99662 * 179.70336 * 24 23 22 44 44 H 1.08998 * 109.47140 * 179.97438 * 27 26 25 45 45 H 1.07994 * 119.99579 * 179.69754 * 30 25 24 46 46 H 1.07998 * 120.01043 * 179.97438 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1511 0.0020 2.3923 6 6 1.8235 1.3575 2.4499 7 6 1.9458 2.0425 3.6223 8 6 2.4152 1.3816 4.7746 9 6 2.5505 2.0857 5.9902 10 1 3.3566 1.8445 6.6673 11 6 1.6404 3.0959 6.3183 12 7 0.7156 3.4473 5.4611 13 14 1.7446 3.9435 7.9797 14 1 3.0711 4.5962 8.1200 15 1 0.6749 4.9685 8.0804 16 1 1.5704 2.9392 9.0595 17 6 2.7493 0.0145 4.7076 18 6 2.6161 -0.6594 3.5299 19 6 2.0323 -0.7104 -1.2305 20 8 2.7296 -1.6966 -1.1193 21 7 1.7067 -0.2499 -2.4546 22 6 2.0973 -0.9606 -3.5972 23 6 1.2675 -0.9972 -4.7098 24 6 1.6506 -1.7021 -5.8336 25 6 2.8695 -2.3641 -5.8554 26 8 3.2486 -3.0538 -6.9641 27 6 2.3455 -3.0485 -8.0717 28 9 1.1243 -3.6077 -7.6803 29 9 2.1400 -1.7325 -8.4995 30 6 3.6991 -2.3280 -4.7441 31 6 3.3146 -1.6282 -3.6175 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 2.2490 -1.6318 1.1525 36 1 1.4684 1.8640 1.5646 37 1 1.6878 3.0903 3.6665 38 1 0.0847 4.1482 5.6884 39 1 3.1093 -0.4984 5.5871 40 1 2.8722 -1.7072 3.4769 41 1 1.2020 0.5735 -2.5446 42 1 0.3204 -0.4781 -4.6946 43 1 1.0031 -1.7346 -6.6973 44 1 2.7684 -3.6338 -8.8882 45 1 4.6457 -2.8476 -4.7599 46 1 3.9603 -1.6004 -2.7523 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014094620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:54 Heat of formation + Delta-G solvation = -119.671582 kcal Electronic energy + Delta-G solvation = -32446.340730 eV Core-core repulsion = 27550.756996 eV Total energy + Delta-G solvation = -4895.583734 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.82616 -47.81431 -40.96563 -39.87709 -38.19592 -37.53383 -35.30747 -34.74457 -33.17008 -31.41160 -30.88096 -29.51819 -29.23992 -27.98107 -26.51495 -24.95245 -23.89583 -23.47222 -22.38360 -21.37058 -20.61273 -19.74281 -19.45257 -18.59484 -18.38171 -18.07698 -17.31818 -17.17576 -16.49220 -15.87955 -15.61241 -15.36059 -15.02147 -14.96880 -14.73949 -14.41352 -14.39714 -14.13358 -14.07128 -13.89578 -13.68182 -13.47871 -13.36793 -13.24616 -12.73789 -12.57297 -12.41938 -12.37042 -12.28220 -12.01632 -11.77429 -11.50819 -11.41985 -11.19021 -11.05831 -10.86102 -10.50233 -10.36915 -9.87076 -9.70921 -9.44407 -9.34115 -9.12230 -8.62835 -8.20200 -7.52657 -6.47449 -6.37594 -4.11435 0.88762 0.98130 2.11462 2.38658 2.72535 2.93225 2.99405 3.08089 3.15838 3.18746 3.32851 3.38940 3.80732 4.09045 4.15035 4.17615 4.38268 4.46867 4.52201 4.81909 4.84913 4.98838 5.13989 5.21534 5.24115 5.40680 5.59400 5.63277 5.75841 5.82137 5.84301 5.99570 6.11369 6.19911 6.28190 6.30805 6.35091 6.73323 6.82717 6.89197 7.10073 7.17834 7.38570 7.50203 7.70053 7.83971 7.89605 8.14538 8.25785 8.45625 8.65340 8.78376 9.08797 9.13624 10.47111 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.001392 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.186675 B =20114.300049 C =20505.156926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.103 0.897 4 N -0.742 5.742 5 C 0.104 3.896 6 C -0.175 4.175 7 C -0.110 4.110 8 C 0.067 3.933 9 C -0.468 4.468 10 H 0.070 0.930 11 C 0.069 3.931 12 N -0.826 5.826 13 Si 0.910 3.090 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.269 1.269 17 C -0.172 4.172 18 C -0.163 4.163 19 C 0.514 3.486 20 O -0.515 6.515 21 N -0.673 5.673 22 C 0.128 3.872 23 C -0.108 4.108 24 C -0.171 4.171 25 C 0.084 3.916 26 O -0.321 6.321 27 C 0.411 3.589 28 F -0.199 7.199 29 F -0.199 7.199 30 C -0.114 4.114 31 C -0.087 4.087 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.274 0.726 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.413 0.587 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.181 0.819 45 H 0.138 0.862 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -8.129 -27.333 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 H 0.120 0.880 4 N -0.379 5.379 5 C 0.008 3.992 6 C -0.197 4.197 7 C -0.130 4.130 8 C 0.064 3.936 9 C -0.500 4.500 10 H 0.088 0.912 11 C -0.143 4.143 12 N -0.456 5.456 13 Si 0.736 3.264 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.192 4.192 18 C -0.185 4.185 19 C 0.301 3.699 20 O -0.389 6.389 21 N -0.319 5.319 22 C 0.034 3.966 23 C -0.129 4.129 24 C -0.190 4.190 25 C 0.041 3.959 26 O -0.239 6.239 27 C 0.321 3.679 28 F -0.181 7.181 29 F -0.181 7.181 30 C -0.133 4.133 31 C -0.107 4.107 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.250 0.750 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.197 0.803 45 H 0.156 0.844 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.022 -8.596 -27.283 28.605 hybrid contribution -0.695 0.564 0.544 1.047 sum -0.673 -8.032 -26.739 27.928 Atomic orbital electron populations 1.22303 0.94278 1.02843 1.03025 1.20405 0.94723 0.97385 0.83793 0.87965 1.43670 1.76862 1.11755 1.05577 1.17374 1.04756 0.91949 0.85133 1.20172 1.08792 0.92533 0.98217 1.21212 1.00929 1.00377 0.90469 1.17549 0.92548 0.90503 0.93018 1.19295 1.11637 1.15534 1.03533 0.91208 1.25744 0.94500 0.95690 0.98371 1.69748 1.14696 1.26326 1.34807 0.86344 0.78431 0.79050 0.82567 1.19325 1.20672 1.19384 1.20702 1.08082 0.94643 0.95795 1.19828 1.07858 0.97859 0.92955 1.21360 0.79431 0.84543 0.84542 1.90672 1.35977 1.26026 1.86187 1.43564 1.57157 1.27064 1.04164 1.17760 0.93737 0.97847 0.87233 1.20705 0.99051 1.00596 0.92520 1.21280 0.96239 1.01092 1.00377 1.18834 0.94874 0.95446 0.86762 1.86629 1.45221 1.69499 1.22504 1.23355 0.77193 0.79063 0.88298 1.93104 1.47952 1.85033 1.91999 1.93100 1.95018 1.40125 1.89889 1.20365 1.00313 1.02060 0.90528 1.21204 0.94860 0.96585 0.98035 0.90059 0.92337 0.92179 0.76954 0.89288 0.85278 0.91547 0.88848 0.89341 0.75045 0.84903 0.84678 0.80274 0.84441 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.32 37.16 0.35 -1.64 16 2 C 0.15 2.03 2.67 -69.08 -0.18 1.85 16 3 H 0.10 1.38 6.44 -51.93 -0.33 1.04 16 4 N -0.74 -12.89 5.09 -53.15 -0.27 -13.16 16 5 C 0.10 2.20 6.65 -83.69 -0.56 1.65 16 6 C -0.18 -3.87 8.76 -39.77 -0.35 -4.22 16 7 C -0.11 -2.79 8.61 -39.26 -0.34 -3.12 16 8 C 0.07 1.77 5.55 -106.79 -0.59 1.18 16 9 C -0.47 -12.61 9.02 -37.87 -0.34 -12.96 16 10 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 11 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 12 N -0.83 -21.70 10.59 55.54 0.59 -21.11 16 13 Si 0.91 19.40 29.56 -169.99 -5.03 14.38 16 14 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 C -0.17 -4.21 9.74 -39.26 -0.38 -4.59 16 18 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 19 C 0.51 6.72 7.06 -10.98 -0.08 6.64 16 20 O -0.51 -8.28 13.29 5.55 0.07 -8.21 16 21 N -0.67 -6.68 5.20 -9.83 -0.05 -6.73 16 22 C 0.13 1.38 6.30 -83.62 -0.53 0.85 16 23 C -0.11 -0.99 9.96 -39.41 -0.39 -1.39 16 24 C -0.17 -1.62 8.25 -39.46 -0.33 -1.95 16 25 C 0.08 0.84 6.48 -39.22 -0.25 0.59 16 26 O -0.32 -2.67 10.43 -19.64 -0.20 -2.88 16 27 C 0.41 2.23 5.98 101.05 0.60 2.84 16 28 F -0.20 -1.45 15.56 2.25 0.04 -1.41 16 29 F -0.20 -1.39 15.60 2.25 0.04 -1.35 16 30 C -0.11 -1.18 9.98 -39.46 -0.39 -1.57 16 31 C -0.09 -1.01 8.69 -39.41 -0.34 -1.35 16 32 H 0.08 1.15 7.69 -51.93 -0.40 0.75 16 33 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 6.87 7.79 -40.82 -0.32 6.55 16 36 H 0.09 1.71 6.06 -52.48 -0.32 1.39 16 37 H 0.13 3.43 6.13 -52.49 -0.32 3.10 16 38 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.41 2.81 8.38 -40.82 -0.34 2.47 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 43 H 0.14 1.15 5.09 -52.49 -0.27 0.89 16 44 H 0.18 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 46 H 0.15 1.94 6.24 -52.49 -0.33 1.62 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -31.52 391.05 -8.63 -40.15 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.11 Total: 13.95 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -4.59 Total: -19.52 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.27 Total: -41.01 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.13 Total: -11.09 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.52 -8.63 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014094620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.521 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds