Wall clock time and date at job start Tue Mar 31 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47480 * 2 1 4 4 N 1.46502 * 109.47446 * 120.00361 * 2 1 3 5 5 C 1.38858 * 119.99827 * 274.99948 * 4 2 1 6 6 C 1.39567 * 119.84194 * 359.72923 * 5 4 2 7 7 C 1.36343 * 120.16086 * 179.71776 * 6 5 4 8 8 C 1.40888 * 119.83327 * 0.54969 * 7 6 5 9 9 C 1.41134 * 120.15294 * 179.69670 * 8 7 6 10 10 H 1.08002 * 120.00197 * 214.79012 * 9 8 7 11 11 C 1.39869 * 119.99857 * 34.79814 * 9 8 7 12 12 N 1.30897 * 120.00058 * 355.59675 * 11 9 8 13 13 Si 1.86802 * 119.99837 * 175.59200 * 11 9 8 14 14 H 1.48498 * 109.46961 * 60.00295 * 13 11 9 15 15 H 1.48497 * 109.47246 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47270 * 300.00234 * 13 11 9 17 17 C 1.40887 * 119.69176 * 359.72147 * 8 7 6 18 18 C 1.36349 * 119.83467 * 359.97438 * 17 8 7 19 19 C 1.50705 * 109.46997 * 240.00056 * 2 1 3 20 20 O 1.21293 * 120.00108 * 239.99905 * 19 2 1 21 21 N 1.34778 * 119.99870 * 60.00127 * 19 2 1 22 22 C 1.40110 * 119.99843 * 184.31938 * 21 19 2 23 23 C 1.38845 * 120.01388 * 144.83811 * 22 21 19 24 24 C 1.38080 * 119.98641 * 180.25244 * 23 22 21 25 25 C 1.38728 * 120.01424 * 359.44700 * 24 23 22 26 26 O 1.35968 * 119.98972 * 180.25095 * 25 24 23 27 27 C 1.42909 * 116.99716 * 0.30305 * 26 25 24 28 28 F 1.39901 * 109.46734 * 299.99835 * 27 26 25 29 29 F 1.39899 * 109.46981 * 59.99688 * 27 26 25 30 30 C 1.38722 * 120.02811 * 0.55283 * 25 24 23 31 31 C 1.38091 * 120.01328 * 359.72472 * 30 25 24 32 32 H 1.08999 * 109.47041 * 299.99514 * 1 2 3 33 33 H 1.08995 * 109.46836 * 59.99728 * 1 2 3 34 34 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 35 35 H 0.96999 * 119.99820 * 94.99424 * 4 2 1 36 36 H 1.08004 * 119.92191 * 359.97123 * 6 5 4 37 37 H 1.08000 * 120.08118 * 180.27230 * 7 6 5 38 38 H 0.97004 * 120.00168 * 180.02562 * 12 11 9 39 39 H 1.07991 * 120.08210 * 180.02562 * 17 8 7 40 40 H 1.07997 * 119.91624 * 179.97438 * 18 17 8 41 41 H 0.97000 * 120.00088 * 4.31874 * 21 19 2 42 42 H 1.08003 * 120.00712 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.99662 * 179.70336 * 24 23 22 44 44 H 1.08998 * 109.47140 * 179.97438 * 27 26 25 45 45 H 1.07994 * 119.99579 * 179.69754 * 30 25 24 46 46 H 1.07998 * 120.01043 * 179.97438 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1511 0.0020 2.3923 6 6 1.8235 1.3575 2.4499 7 6 1.9458 2.0425 3.6223 8 6 2.4152 1.3816 4.7746 9 6 2.5505 2.0857 5.9902 10 1 3.3566 1.8445 6.6673 11 6 1.6404 3.0959 6.3183 12 7 0.7156 3.4473 5.4611 13 14 1.7446 3.9435 7.9797 14 1 3.0711 4.5962 8.1200 15 1 0.6749 4.9685 8.0804 16 1 1.5704 2.9392 9.0595 17 6 2.7493 0.0145 4.7076 18 6 2.6161 -0.6594 3.5299 19 6 2.0323 -0.7104 -1.2305 20 8 2.7296 -1.6966 -1.1193 21 7 1.7067 -0.2499 -2.4546 22 6 2.0973 -0.9606 -3.5972 23 6 1.2675 -0.9972 -4.7098 24 6 1.6506 -1.7021 -5.8336 25 6 2.8695 -2.3641 -5.8554 26 8 3.2486 -3.0538 -6.9641 27 6 2.3455 -3.0485 -8.0717 28 9 1.1243 -3.6077 -7.6803 29 9 2.1400 -1.7325 -8.4995 30 6 3.6991 -2.3280 -4.7441 31 6 3.3146 -1.6282 -3.6175 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 2.2490 -1.6318 1.1525 36 1 1.4684 1.8640 1.5646 37 1 1.6878 3.0903 3.6665 38 1 0.0847 4.1482 5.6884 39 1 3.1093 -0.4984 5.5871 40 1 2.8722 -1.7072 3.4769 41 1 1.2020 0.5735 -2.5446 42 1 0.3204 -0.4781 -4.6946 43 1 1.0031 -1.7346 -6.6973 44 1 2.7684 -3.6338 -8.8882 45 1 4.6457 -2.8476 -4.7599 46 1 3.9603 -1.6004 -2.7523 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014094620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:53 Heat of formation + Delta-G solvation = -138.408293 kcal Electronic energy + Delta-G solvation = -32447.153215 eV Core-core repulsion = 27550.756996 eV Total energy + Delta-G solvation = -4896.396219 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.30190 -48.29889 -41.88030 -40.70556 -39.71102 -38.49791 -36.81337 -35.66618 -34.90889 -32.29619 -32.16559 -31.33078 -30.23962 -29.51465 -27.07381 -26.47007 -25.13838 -24.23716 -23.44897 -22.94316 -22.03493 -21.06677 -20.06887 -19.22367 -19.11956 -19.05082 -18.86865 -18.37973 -17.21180 -17.10743 -16.84639 -16.63011 -16.45156 -15.79120 -15.63544 -15.55115 -15.20079 -14.97998 -14.94775 -14.74306 -14.63499 -14.51464 -14.34732 -14.30336 -14.14466 -13.96788 -13.78408 -13.47505 -13.34982 -13.20828 -12.99170 -12.93228 -12.83093 -12.72413 -12.43058 -12.24341 -12.16159 -11.55658 -11.29060 -11.22142 -10.98181 -10.90484 -10.34190 -10.12098 -9.38161 -8.99396 -8.36908 -8.12969 -6.07054 0.09146 0.21460 1.11994 1.22074 1.39105 1.42312 1.52535 1.58472 1.61123 1.82178 2.31689 2.56893 2.61506 2.81795 2.92615 3.48082 3.51637 3.71232 3.76412 3.77527 3.81115 4.04387 4.10351 4.17301 4.27033 4.44936 4.49341 4.51293 4.63904 4.69368 4.83062 4.89135 5.05753 5.09519 5.13288 5.20907 5.28335 5.29492 5.30468 5.49195 5.57434 5.69449 5.81849 5.99334 5.99778 6.22128 6.25846 6.42870 6.68012 6.86850 6.96226 7.08527 7.13865 7.25905 8.58747 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.001392 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.186675 B =20114.300049 C =20505.156926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.110 0.890 4 N -0.739 5.739 5 C 0.127 3.873 6 C -0.177 4.177 7 C -0.125 4.125 8 C 0.025 3.975 9 C -0.505 4.505 10 H 0.063 0.937 11 C 0.027 3.973 12 N -0.855 5.855 13 Si 0.980 3.020 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.267 1.267 17 C -0.181 4.181 18 C -0.175 4.175 19 C 0.519 3.481 20 O -0.549 6.549 21 N -0.653 5.653 22 C 0.112 3.888 23 C -0.099 4.099 24 C -0.177 4.177 25 C 0.081 3.919 26 O -0.329 6.329 27 C 0.405 3.595 28 F -0.210 7.210 29 F -0.209 7.209 30 C -0.125 4.125 31 C -0.102 4.102 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.279 0.721 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.430 0.570 42 H 0.162 0.838 43 H 0.146 0.854 44 H 0.234 0.766 45 H 0.146 0.854 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 -8.303 -29.825 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.128 0.872 4 N -0.374 5.374 5 C 0.028 3.972 6 C -0.199 4.199 7 C -0.146 4.146 8 C 0.022 3.978 9 C -0.538 4.538 10 H 0.081 0.919 11 C -0.183 4.183 12 N -0.485 5.485 13 Si 0.802 3.198 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.192 1.192 17 C -0.201 4.201 18 C -0.198 4.198 19 C 0.306 3.694 20 O -0.426 6.426 21 N -0.301 5.301 22 C 0.018 3.982 23 C -0.119 4.119 24 C -0.196 4.196 25 C 0.037 3.963 26 O -0.247 6.247 27 C 0.316 3.684 28 F -0.192 7.192 29 F -0.190 7.190 30 C -0.144 4.144 31 C -0.122 4.122 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.232 0.768 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.270 0.730 42 H 0.179 0.821 43 H 0.163 0.837 44 H 0.249 0.751 45 H 0.164 0.836 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.034 -8.765 -29.852 31.129 hybrid contribution -0.359 0.471 1.029 1.187 sum -1.393 -8.294 -28.823 30.025 Atomic orbital electron populations 1.22237 0.92403 1.03010 1.04093 1.20630 0.95966 0.97312 0.82709 0.87207 1.43740 1.76174 1.11856 1.05605 1.17431 1.01954 0.91655 0.86112 1.20355 1.08397 0.92971 0.98207 1.21139 1.02014 0.99895 0.91511 1.17869 0.94571 0.91670 0.93659 1.19514 1.12630 1.17391 1.04266 0.91862 1.26537 0.93794 0.95981 1.01965 1.69829 1.15280 1.26910 1.36434 0.85290 0.78733 0.77973 0.77805 1.18804 1.19529 1.19213 1.20845 1.08110 0.94267 0.96914 1.20088 1.07947 0.98990 0.92728 1.21111 0.79099 0.84011 0.85144 1.90675 1.37624 1.27601 1.86675 1.43292 1.56418 1.27340 1.03014 1.17858 0.93957 0.98585 0.87818 1.20969 0.99628 0.99816 0.91446 1.21502 0.96225 1.00962 1.00899 1.18975 0.94874 0.95214 0.87213 1.86631 1.46292 1.69091 1.22637 1.24261 0.76640 0.79121 0.88356 1.93080 1.48834 1.85119 1.92171 1.93080 1.95046 1.41118 1.89803 1.20470 1.01002 1.02268 0.90618 1.21148 0.95433 0.97678 0.97942 0.92037 0.88220 0.92473 0.76783 0.86347 0.87042 0.91105 0.88613 0.87131 0.73043 0.82053 0.83661 0.75066 0.83619 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.32 71.98 0.67 -2.70 16 2 C 0.14 3.64 2.67 44.25 0.12 3.75 16 3 H 0.11 2.66 6.44 -2.39 -0.02 2.65 16 4 N -0.74 -24.64 5.09 -322.08 -1.64 -26.28 16 5 C 0.13 5.28 6.65 38.67 0.26 5.53 16 6 C -0.18 -7.76 8.76 22.15 0.19 -7.57 16 7 C -0.13 -6.54 8.61 22.48 0.19 -6.34 16 8 C 0.02 1.38 5.55 -21.27 -0.12 1.26 16 9 C -0.51 -28.39 9.02 23.38 0.21 -28.18 16 10 H 0.06 3.46 7.85 -2.91 -0.02 3.44 16 11 C 0.03 1.40 5.42 85.23 0.46 1.86 16 12 N -0.85 -46.02 10.59 21.82 0.23 -45.79 16 13 Si 0.98 40.49 29.56 68.60 2.03 42.52 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 15 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 17 C -0.18 -9.10 9.74 22.48 0.22 -8.88 16 18 C -0.18 -7.78 9.82 22.15 0.22 -7.56 16 19 C 0.52 12.67 7.06 87.66 0.62 13.29 16 20 O -0.55 -17.32 13.29 -3.07 -0.04 -17.36 16 21 N -0.65 -11.41 5.20 -303.39 -1.58 -12.98 16 22 C 0.11 2.20 6.30 38.11 0.24 2.44 16 23 C -0.10 -1.55 9.96 22.38 0.22 -1.32 16 24 C -0.18 -2.98 8.25 22.35 0.18 -2.80 16 25 C 0.08 1.51 6.48 22.50 0.15 1.66 16 26 O -0.33 -4.88 10.43 -93.19 -0.97 -5.85 16 27 C 0.41 3.36 5.98 113.37 0.68 4.04 16 28 F -0.21 -2.60 15.56 44.97 0.70 -1.90 16 29 F -0.21 -2.44 15.60 44.97 0.70 -1.73 16 30 C -0.12 -2.52 9.98 22.35 0.22 -2.30 16 31 C -0.10 -2.33 8.69 22.38 0.19 -2.13 16 32 H 0.06 1.60 7.69 -2.39 -0.02 1.58 16 33 H 0.10 1.29 7.67 -2.39 -0.02 1.27 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.40 13.31 7.79 -92.71 -0.72 12.59 16 36 H 0.12 4.37 6.06 -2.91 -0.02 4.35 16 37 H 0.11 6.14 6.13 -2.91 -0.02 6.12 16 38 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 39 H 0.10 4.59 8.06 -2.92 -0.02 4.57 16 40 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.43 4.36 8.38 -92.71 -0.78 3.59 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.15 2.13 5.09 -2.91 -0.01 2.11 16 44 H 0.23 -0.65 8.14 -2.39 -0.02 -0.67 16 45 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 46 H 0.13 3.49 6.24 -2.91 -0.02 3.47 16 Total: -1.00 -71.51 391.05 3.94 -67.57 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.42 Total: 37.74 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 4.93 Total: -35.94 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.99 Total: -85.05 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.01 Total: -23.21 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 1.40 Total: -3.63 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -71.51 3.94 -67.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014094620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.836 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds