Wall clock time and date at job start Tue Mar 31 2020 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46655 * 2 1 4 4 N 1.46497 * 109.46917 * 240.00432 * 2 1 3 5 5 C 1.38858 * 120.00578 * 84.99954 * 4 2 1 6 6 C 1.39565 * 119.83468 * 359.72382 * 5 4 2 7 7 C 1.36348 * 120.15599 * 179.72018 * 6 5 4 8 8 C 1.40888 * 119.83415 * 0.55390 * 7 6 5 9 9 C 1.41136 * 120.15351 * 179.69987 * 8 7 6 10 10 H 1.07996 * 119.99859 * 205.38126 * 9 8 7 11 11 C 1.39864 * 120.00043 * 25.38795 * 9 8 7 12 12 N 1.30905 * 120.00272 * 16.81832 * 11 9 8 13 13 Si 1.86804 * 120.00060 * 196.81970 * 11 9 8 14 14 H 1.48497 * 109.46782 * 59.99714 * 13 11 9 15 15 H 1.48499 * 109.47278 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46835 * 300.00009 * 13 11 9 17 17 C 1.40884 * 119.68782 * 359.71976 * 8 7 6 18 18 C 1.36334 * 119.83883 * 0.02562 * 17 8 7 19 19 C 1.50697 * 109.46978 * 120.00110 * 2 1 3 20 20 O 1.21298 * 119.99816 * 120.00146 * 19 2 1 21 21 N 1.34774 * 120.00092 * 299.99843 * 19 2 1 22 22 C 1.40109 * 120.00138 * 185.10873 * 21 19 2 23 23 C 1.38850 * 120.01299 * 34.30869 * 22 21 19 24 24 C 1.38091 * 119.98618 * 180.02562 * 23 22 21 25 25 C 1.38720 * 120.01027 * 0.02562 * 24 23 22 26 26 O 1.35979 * 119.98152 * 179.97438 * 25 24 23 27 27 C 1.42902 * 116.99792 * 180.02562 * 26 25 24 28 28 F 1.39891 * 109.47496 * 300.00534 * 27 26 25 29 29 F 1.39899 * 109.46746 * 60.00810 * 27 26 25 30 30 C 1.38720 * 120.03303 * 0.24474 * 25 24 23 31 31 C 1.38090 * 120.01394 * 359.48223 * 30 25 24 32 32 H 1.09002 * 109.46748 * 299.99788 * 1 2 3 33 33 H 1.09000 * 109.47097 * 59.99739 * 1 2 3 34 34 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 35 35 H 0.97001 * 119.99779 * 265.00328 * 4 2 1 36 36 H 1.07998 * 119.92639 * 359.97438 * 6 5 4 37 37 H 1.07996 * 120.08379 * 180.28158 * 7 6 5 38 38 H 0.96997 * 120.00545 * 180.02562 * 12 11 9 39 39 H 1.08003 * 120.07882 * 179.97438 * 17 8 7 40 40 H 1.08007 * 119.92031 * 179.97438 * 18 17 8 41 41 H 0.97001 * 120.00143 * 5.10773 * 21 19 2 42 42 H 1.08008 * 120.00821 * 359.97438 * 23 22 21 43 43 H 1.07992 * 119.99246 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.46769 * 180.02562 * 27 26 25 45 45 H 1.08005 * 119.99054 * 179.72113 * 30 25 24 46 46 H 1.08002 * 120.00806 * 180.23904 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1510 0.0022 -2.3924 6 6 1.8126 1.3548 -2.4526 7 6 1.9457 2.0428 -3.6223 8 6 2.4150 1.3819 -4.7746 9 6 2.5493 2.0859 -5.9905 10 1 2.5030 1.5550 -6.9298 11 6 2.7426 3.4710 -5.9788 12 7 3.1250 4.0694 -4.8792 13 14 2.4548 4.4673 -7.5326 14 1 1.0452 4.3053 -7.9705 15 1 2.7259 5.9014 -7.2584 16 1 3.3642 3.9872 -8.6039 17 6 2.7491 0.0149 -4.7076 18 6 2.6160 -0.6591 -3.5300 19 6 2.0324 -0.7104 1.2304 20 8 2.7297 -1.6966 1.1191 21 7 1.7068 -0.2500 2.4545 22 6 2.2595 -0.8445 3.5965 23 6 3.5562 -1.3399 3.5631 24 6 4.1002 -1.9263 4.6888 25 6 3.3512 -2.0209 5.8526 26 8 3.8873 -2.5988 6.9606 27 6 3.0595 -2.6631 8.1237 28 9 2.6994 -1.3683 8.5120 29 9 1.9066 -3.4011 7.8353 30 6 2.0537 -1.5312 5.8850 31 6 1.5105 -0.9396 4.7617 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 2.2490 -1.6317 -1.1527 36 1 1.4484 1.8590 -1.5696 37 1 1.6878 3.0906 -3.6664 38 1 3.2587 5.0301 -4.8710 39 1 3.1091 -0.4981 -5.5872 40 1 2.8714 -1.7072 -3.4772 41 1 1.0898 0.4930 2.5450 42 1 4.1390 -1.2674 2.6567 43 1 5.1085 -2.3120 4.6629 44 1 3.6072 -3.1457 8.9331 45 1 1.4696 -1.6093 6.7901 46 1 0.5016 -0.5549 4.7881 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014094621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:58 Heat of formation + Delta-G solvation = -121.063609 kcal Electronic energy + Delta-G solvation = -32466.958421 eV Core-core repulsion = 27571.314324 eV Total energy + Delta-G solvation = -4895.644097 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.81821 -47.80592 -40.94581 -39.86195 -38.17697 -37.52464 -35.30789 -34.72874 -33.23636 -31.40951 -30.89162 -29.50632 -29.23263 -28.01372 -26.50364 -24.96481 -23.90137 -23.46111 -22.38004 -21.37053 -20.61359 -19.71653 -19.43951 -18.56969 -18.37274 -18.09770 -17.29827 -17.21634 -16.48361 -15.82002 -15.68256 -15.27548 -15.01084 -14.99398 -14.76067 -14.40036 -14.37126 -14.12528 -14.07825 -13.88909 -13.70888 -13.46215 -13.34898 -13.23152 -12.73573 -12.57822 -12.42728 -12.39478 -12.30288 -12.01921 -11.74713 -11.62000 -11.41303 -11.19889 -11.02626 -10.86029 -10.50231 -10.37712 -9.89144 -9.72982 -9.34335 -9.30340 -9.28557 -8.62337 -8.17467 -7.52450 -6.65539 -6.43722 -4.06444 0.89638 0.98725 2.12531 2.41578 2.73826 2.91509 3.00304 3.07744 3.13249 3.16705 3.33554 3.40909 3.81729 4.04148 4.16087 4.19940 4.38822 4.47825 4.52599 4.73996 4.85677 4.99404 5.14746 5.21799 5.23847 5.42216 5.57269 5.62922 5.80213 5.82487 5.83730 5.99405 6.12098 6.18924 6.28035 6.30263 6.35389 6.73957 6.84156 6.90032 7.11076 7.17520 7.33844 7.50922 7.66371 7.81009 7.91399 8.12234 8.25113 8.44489 8.66388 8.76617 9.04005 9.12135 10.36026 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.001420 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.670664 B =19711.658462 C =19909.700001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 H 0.103 0.897 4 N -0.742 5.742 5 C 0.092 3.908 6 C -0.166 4.166 7 C -0.123 4.123 8 C 0.075 3.925 9 C -0.467 4.467 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.809 5.809 13 Si 0.904 3.096 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.268 1.268 17 C -0.185 4.185 18 C -0.153 4.153 19 C 0.513 3.487 20 O -0.514 6.514 21 N -0.674 5.674 22 C 0.132 3.868 23 C -0.086 4.086 24 C -0.111 4.111 25 C 0.083 3.917 26 O -0.321 6.321 27 C 0.411 3.589 28 F -0.199 7.199 29 F -0.199 7.199 30 C -0.170 4.170 31 C -0.109 4.109 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.395 0.605 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.277 0.723 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.413 0.587 42 H 0.146 0.854 43 H 0.138 0.862 44 H 0.181 0.819 45 H 0.136 0.864 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -8.090 26.318 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.037 3.963 3 H 0.121 0.879 4 N -0.379 5.379 5 C -0.005 4.005 6 C -0.188 4.188 7 C -0.143 4.143 8 C 0.072 3.928 9 C -0.498 4.498 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.436 5.436 13 Si 0.729 3.271 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.193 1.193 17 C -0.205 4.205 18 C -0.175 4.175 19 C 0.301 3.699 20 O -0.387 6.387 21 N -0.321 5.321 22 C 0.037 3.963 23 C -0.106 4.106 24 C -0.131 4.131 25 C 0.040 3.960 26 O -0.238 6.238 27 C 0.321 3.679 28 F -0.181 7.181 29 F -0.181 7.181 30 C -0.189 4.189 31 C -0.130 4.130 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.249 0.751 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.197 0.803 45 H 0.153 0.847 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.408 -8.458 26.330 27.760 hybrid contribution -0.611 0.680 -0.410 1.002 sum -3.019 -7.778 25.920 27.230 Atomic orbital electron populations 1.22320 0.94488 1.02796 1.02891 1.20406 0.94648 0.97406 0.83855 0.87931 1.43629 1.77037 1.11682 1.05549 1.17285 1.06289 0.91768 0.85109 1.20096 1.08255 0.92418 0.98045 1.20924 1.01287 0.99852 0.92266 1.17509 0.90846 0.90973 0.93438 1.19347 1.44924 0.91847 0.93648 0.90961 1.25790 0.92556 0.98403 0.97293 1.69834 1.34115 1.11269 1.28393 0.86448 0.79882 0.78352 0.82419 1.19095 1.20597 1.19261 1.20565 1.07918 0.95997 0.96016 1.19811 1.07101 0.97712 0.92880 1.21366 0.79745 0.84279 0.84546 1.90696 1.36675 1.25107 1.86231 1.43611 1.47984 1.36259 1.04226 1.17738 0.92487 0.99112 0.86928 1.21051 0.93453 0.97670 0.98455 1.20332 1.00676 1.02266 0.89780 1.18813 0.93123 0.97485 0.86561 1.86629 1.41807 1.76051 1.19351 1.23352 0.79505 0.76744 0.88306 1.93098 1.92591 1.41423 1.91019 1.93103 1.53765 1.77064 1.94173 1.21281 0.94520 1.02765 1.00320 1.20688 0.99513 1.00868 0.91923 0.92431 0.90160 0.92141 0.77010 0.89365 0.86327 0.91268 0.88951 0.89409 0.75075 0.83642 0.84401 0.80273 0.84677 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.29 37.16 0.35 -1.57 16 2 C 0.15 2.05 2.68 -69.08 -0.18 1.87 16 3 H 0.10 1.43 6.46 -51.93 -0.34 1.10 16 4 N -0.74 -13.01 5.09 -53.16 -0.27 -13.28 16 5 C 0.09 1.95 6.65 -83.69 -0.56 1.39 16 6 C -0.17 -3.69 8.73 -39.77 -0.35 -4.04 16 7 C -0.12 -3.13 8.63 -39.26 -0.34 -3.47 16 8 C 0.08 2.00 5.57 -106.79 -0.59 1.41 16 9 C -0.47 -12.53 9.04 -37.87 -0.34 -12.87 16 10 H 0.07 1.88 7.90 -52.49 -0.41 1.46 16 11 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 12 N -0.81 -21.14 10.95 55.54 0.61 -20.53 16 13 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 C -0.18 -4.54 9.74 -39.27 -0.38 -4.92 16 18 C -0.15 -3.43 9.82 -39.77 -0.39 -3.82 16 19 C 0.51 6.85 6.96 -10.99 -0.08 6.77 16 20 O -0.51 -8.47 13.59 5.54 0.08 -8.39 16 21 N -0.67 -6.85 5.27 -9.83 -0.05 -6.90 16 22 C 0.13 1.44 6.26 -83.62 -0.52 0.92 16 23 C -0.09 -1.03 8.65 -39.41 -0.34 -1.37 16 24 C -0.11 -1.18 9.98 -39.46 -0.39 -1.58 16 25 C 0.08 0.85 6.48 -39.23 -0.25 0.60 16 26 O -0.32 -2.73 10.43 -19.67 -0.21 -2.93 16 27 C 0.41 2.28 5.98 101.05 0.60 2.89 16 28 F -0.20 -1.41 15.59 2.25 0.04 -1.38 16 29 F -0.20 -1.47 15.56 2.25 0.04 -1.43 16 30 C -0.17 -1.64 8.25 -39.46 -0.33 -1.96 16 31 C -0.11 -1.02 9.96 -39.41 -0.39 -1.41 16 32 H 0.06 0.47 7.46 -51.93 -0.39 0.08 16 33 H 0.08 1.07 7.63 -51.93 -0.40 0.67 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.39 6.93 7.79 -40.82 -0.32 6.61 16 36 H 0.09 1.70 6.02 -52.49 -0.32 1.39 16 37 H 0.12 3.12 6.17 -52.49 -0.32 2.79 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.41 2.88 8.10 -40.82 -0.33 2.55 16 42 H 0.15 1.93 6.48 -52.48 -0.34 1.59 16 43 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.18 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.14 1.17 5.09 -52.48 -0.27 0.90 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -31.62 391.12 -8.60 -40.22 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.10 Total: 14.10 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -4.58 Total: -19.35 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.29 Total: -40.72 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.13 Total: -11.33 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.07 Total: -2.81 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.62 -8.60 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014094621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.844 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds