Wall clock time and date at job start Tue Mar 31 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46655 * 2 1 4 4 N 1.46497 * 109.46917 * 240.00432 * 2 1 3 5 5 C 1.38858 * 120.00578 * 84.99954 * 4 2 1 6 6 C 1.39565 * 119.83468 * 359.72382 * 5 4 2 7 7 C 1.36348 * 120.15599 * 179.72018 * 6 5 4 8 8 C 1.40888 * 119.83415 * 0.55390 * 7 6 5 9 9 C 1.41136 * 120.15351 * 179.69987 * 8 7 6 10 10 H 1.07996 * 119.99859 * 205.38126 * 9 8 7 11 11 C 1.39864 * 120.00043 * 25.38795 * 9 8 7 12 12 N 1.30905 * 120.00272 * 16.81832 * 11 9 8 13 13 Si 1.86804 * 120.00060 * 196.81970 * 11 9 8 14 14 H 1.48497 * 109.46782 * 59.99714 * 13 11 9 15 15 H 1.48499 * 109.47278 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46835 * 300.00009 * 13 11 9 17 17 C 1.40884 * 119.68782 * 359.71976 * 8 7 6 18 18 C 1.36334 * 119.83883 * 0.02562 * 17 8 7 19 19 C 1.50697 * 109.46978 * 120.00110 * 2 1 3 20 20 O 1.21298 * 119.99816 * 120.00146 * 19 2 1 21 21 N 1.34774 * 120.00092 * 299.99843 * 19 2 1 22 22 C 1.40109 * 120.00138 * 185.10873 * 21 19 2 23 23 C 1.38850 * 120.01299 * 34.30869 * 22 21 19 24 24 C 1.38091 * 119.98618 * 180.02562 * 23 22 21 25 25 C 1.38720 * 120.01027 * 0.02562 * 24 23 22 26 26 O 1.35979 * 119.98152 * 179.97438 * 25 24 23 27 27 C 1.42902 * 116.99792 * 180.02562 * 26 25 24 28 28 F 1.39891 * 109.47496 * 300.00534 * 27 26 25 29 29 F 1.39899 * 109.46746 * 60.00810 * 27 26 25 30 30 C 1.38720 * 120.03303 * 0.24474 * 25 24 23 31 31 C 1.38090 * 120.01394 * 359.48223 * 30 25 24 32 32 H 1.09002 * 109.46748 * 299.99788 * 1 2 3 33 33 H 1.09000 * 109.47097 * 59.99739 * 1 2 3 34 34 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 35 35 H 0.97001 * 119.99779 * 265.00328 * 4 2 1 36 36 H 1.07998 * 119.92639 * 359.97438 * 6 5 4 37 37 H 1.07996 * 120.08379 * 180.28158 * 7 6 5 38 38 H 0.96997 * 120.00545 * 180.02562 * 12 11 9 39 39 H 1.08003 * 120.07882 * 179.97438 * 17 8 7 40 40 H 1.08007 * 119.92031 * 179.97438 * 18 17 8 41 41 H 0.97001 * 120.00143 * 5.10773 * 21 19 2 42 42 H 1.08008 * 120.00821 * 359.97438 * 23 22 21 43 43 H 1.07992 * 119.99246 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.46769 * 180.02562 * 27 26 25 45 45 H 1.08005 * 119.99054 * 179.72113 * 30 25 24 46 46 H 1.08002 * 120.00806 * 180.23904 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1510 0.0022 -2.3924 6 6 1.8126 1.3548 -2.4526 7 6 1.9457 2.0428 -3.6223 8 6 2.4150 1.3819 -4.7746 9 6 2.5493 2.0859 -5.9905 10 1 2.5030 1.5550 -6.9298 11 6 2.7426 3.4710 -5.9788 12 7 3.1250 4.0694 -4.8792 13 14 2.4548 4.4673 -7.5326 14 1 1.0452 4.3053 -7.9705 15 1 2.7259 5.9014 -7.2584 16 1 3.3642 3.9872 -8.6039 17 6 2.7491 0.0149 -4.7076 18 6 2.6160 -0.6591 -3.5300 19 6 2.0324 -0.7104 1.2304 20 8 2.7297 -1.6966 1.1191 21 7 1.7068 -0.2500 2.4545 22 6 2.2595 -0.8445 3.5965 23 6 3.5562 -1.3399 3.5631 24 6 4.1002 -1.9263 4.6888 25 6 3.3512 -2.0209 5.8526 26 8 3.8873 -2.5988 6.9606 27 6 3.0595 -2.6631 8.1237 28 9 2.6994 -1.3683 8.5120 29 9 1.9066 -3.4011 7.8353 30 6 2.0537 -1.5312 5.8850 31 6 1.5105 -0.9396 4.7617 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 2.2490 -1.6317 -1.1527 36 1 1.4484 1.8590 -1.5696 37 1 1.6878 3.0906 -3.6664 38 1 3.2587 5.0301 -4.8710 39 1 3.1091 -0.4981 -5.5872 40 1 2.8714 -1.7072 -3.4772 41 1 1.0898 0.4930 2.5450 42 1 4.1390 -1.2674 2.6567 43 1 5.1085 -2.3120 4.6629 44 1 3.6072 -3.1457 8.9331 45 1 1.4696 -1.6093 6.7901 46 1 0.5016 -0.5549 4.7881 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014094621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:57 Heat of formation + Delta-G solvation = -139.989012 kcal Electronic energy + Delta-G solvation = -32467.779088 eV Core-core repulsion = 27571.314324 eV Total energy + Delta-G solvation = -4896.464764 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -50.30422 -48.30036 -41.87768 -40.70843 -39.70212 -38.50842 -36.82246 -35.67219 -34.96326 -32.31001 -32.18048 -31.32748 -30.25877 -29.52429 -27.07444 -26.47489 -25.14251 -24.24965 -23.45757 -22.97301 -22.03276 -21.04576 -20.07022 -19.21477 -19.14927 -19.07436 -18.87047 -18.38841 -17.22564 -17.09520 -16.89294 -16.67089 -16.35641 -15.79769 -15.64219 -15.57092 -15.20865 -15.01237 -14.94962 -14.75556 -14.63691 -14.51277 -14.33041 -14.27305 -14.17725 -13.96882 -13.78804 -13.53469 -13.27552 -13.22648 -13.21728 -12.92852 -12.71986 -12.55784 -12.53478 -12.25595 -12.15479 -11.57744 -11.28768 -11.14251 -11.09808 -10.92762 -10.36741 -10.13594 -9.38891 -8.98768 -8.53005 -8.19292 -6.00794 0.07692 0.20246 1.11868 1.19979 1.40429 1.41948 1.52293 1.59309 1.61319 1.81809 2.29047 2.56625 2.61234 2.83690 2.86351 3.47604 3.51464 3.71169 3.74711 3.76908 3.85215 4.05009 4.09427 4.18531 4.25680 4.42042 4.49361 4.50386 4.63370 4.69990 4.84487 4.87368 5.04277 5.08606 5.12847 5.18753 5.28004 5.28835 5.30375 5.46302 5.55601 5.68547 5.79400 5.96193 5.98830 6.19501 6.25416 6.40884 6.66730 6.85574 6.96214 7.09085 7.10164 7.26191 8.49962 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.001420 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.670664 B =19711.658462 C =19909.700001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.107 0.893 4 N -0.739 5.739 5 C 0.115 3.885 6 C -0.169 4.169 7 C -0.139 4.139 8 C 0.035 3.965 9 C -0.506 4.506 10 H 0.066 0.934 11 C 0.034 3.966 12 N -0.841 5.841 13 Si 0.976 3.024 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.265 1.265 17 C -0.196 4.196 18 C -0.166 4.166 19 C 0.518 3.482 20 O -0.550 6.550 21 N -0.654 5.654 22 C 0.114 3.886 23 C -0.102 4.102 24 C -0.123 4.123 25 C 0.081 3.919 26 O -0.329 6.329 27 C 0.405 3.595 28 F -0.208 7.208 29 F -0.210 7.210 30 C -0.175 4.175 31 C -0.099 4.099 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.283 0.717 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.430 0.570 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.234 0.766 45 H 0.147 0.853 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 -8.089 28.897 30.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.124 0.876 4 N -0.375 5.375 5 C 0.016 3.984 6 C -0.191 4.191 7 C -0.159 4.159 8 C 0.033 3.967 9 C -0.537 4.537 10 H 0.084 0.916 11 C -0.178 4.178 12 N -0.469 5.469 13 Si 0.797 3.203 14 H -0.187 1.187 15 H -0.194 1.194 16 H -0.189 1.189 17 C -0.216 4.216 18 C -0.188 4.188 19 C 0.306 3.694 20 O -0.426 6.426 21 N -0.302 5.302 22 C 0.020 3.980 23 C -0.123 4.123 24 C -0.142 4.142 25 C 0.037 3.963 26 O -0.247 6.247 27 C 0.316 3.684 28 F -0.190 7.190 29 F -0.192 7.192 30 C -0.194 4.194 31 C -0.119 4.119 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.250 0.750 45 H 0.164 0.836 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.668 -8.454 28.981 30.411 hybrid contribution -0.219 0.519 -0.928 1.085 sum -3.887 -7.935 28.054 29.412 Atomic orbital electron populations 1.22258 0.92119 1.03173 1.04228 1.20638 0.96265 0.97050 0.82688 0.87579 1.43700 1.76434 1.11768 1.05586 1.17354 1.03431 0.91512 0.86086 1.20297 1.07874 0.92807 0.98075 1.20886 1.02329 0.99419 0.93263 1.17843 0.92571 0.92105 0.94214 1.19563 1.47321 0.93203 0.93656 0.91601 1.26566 0.91729 0.98890 1.00653 1.69891 1.34868 1.11790 1.30325 0.85358 0.79706 0.77002 0.78194 1.18717 1.19408 1.18938 1.20721 1.08094 0.95687 0.97081 1.20068 1.07269 0.98843 0.92665 1.21152 0.79317 0.83771 0.85202 1.90696 1.38404 1.26790 1.86745 1.43335 1.47539 1.36242 1.03071 1.17843 0.92499 1.00067 0.87564 1.20998 0.94186 0.98846 0.98222 1.20434 1.01318 1.02527 0.89931 1.18950 0.93302 0.97040 0.87009 1.86632 1.42744 1.75663 1.19618 1.24261 0.79376 0.76483 0.88254 1.93078 1.92704 1.42330 1.90922 1.93080 1.54600 1.77239 1.94268 1.21511 0.94448 1.02565 1.00910 1.20963 1.00474 0.99661 0.90810 0.88250 0.91687 0.92255 0.76869 0.86413 0.87879 0.90706 0.88804 0.87270 0.73035 0.85657 0.83633 0.75050 0.83571 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.29 71.98 0.67 -2.55 16 2 C 0.14 3.68 2.68 44.25 0.12 3.80 16 3 H 0.11 2.70 6.46 -2.39 -0.02 2.69 16 4 N -0.74 -24.99 5.09 -322.09 -1.64 -26.63 16 5 C 0.11 4.80 6.65 38.67 0.26 5.06 16 6 C -0.17 -7.42 8.73 22.15 0.19 -7.23 16 7 C -0.14 -7.23 8.63 22.48 0.19 -7.04 16 8 C 0.04 1.96 5.57 -21.27 -0.12 1.84 16 9 C -0.51 -28.31 9.04 23.38 0.21 -28.10 16 10 H 0.07 3.59 7.90 -2.91 -0.02 3.57 16 11 C 0.03 1.75 5.15 85.22 0.44 2.19 16 12 N -0.84 -45.10 10.95 21.82 0.24 -44.86 16 13 Si 0.98 39.73 29.59 68.60 2.03 41.76 16 14 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 15 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 17 C -0.20 -9.90 9.74 22.47 0.22 -9.68 16 18 C -0.17 -7.46 9.82 22.14 0.22 -7.24 16 19 C 0.52 13.00 6.96 87.66 0.61 13.61 16 20 O -0.55 -17.88 13.59 -3.08 -0.04 -17.92 16 21 N -0.65 -11.78 5.27 -303.40 -1.60 -13.38 16 22 C 0.11 2.32 6.26 38.11 0.24 2.56 16 23 C -0.10 -2.42 8.65 22.38 0.19 -2.22 16 24 C -0.12 -2.57 9.98 22.35 0.22 -2.35 16 25 C 0.08 1.54 6.48 22.50 0.15 1.69 16 26 O -0.33 -5.00 10.43 -93.31 -0.97 -5.98 16 27 C 0.41 3.45 5.98 113.37 0.68 4.13 16 28 F -0.21 -2.48 15.59 44.97 0.70 -1.77 16 29 F -0.21 -2.62 15.56 44.97 0.70 -1.92 16 30 C -0.18 -3.01 8.25 22.35 0.18 -2.82 16 31 C -0.10 -1.59 9.96 22.38 0.22 -1.36 16 32 H 0.10 1.18 7.46 -2.39 -0.02 1.16 16 33 H 0.06 1.57 7.63 -2.39 -0.02 1.55 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.40 13.49 7.79 -92.71 -0.72 12.76 16 36 H 0.12 4.37 6.02 -2.91 -0.02 4.35 16 37 H 0.10 5.62 6.17 -2.91 -0.02 5.60 16 38 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 39 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 41 H 0.43 4.50 8.10 -92.71 -0.75 3.75 16 42 H 0.13 3.44 6.48 -2.91 -0.02 3.42 16 43 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.23 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.15 2.16 5.09 -2.91 -0.01 2.14 16 46 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -71.92 391.12 3.91 -68.01 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -0.40 Total: 38.41 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 4.90 Total: -35.72 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -3.00 Total: -84.88 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.02 Total: -23.90 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 1.40 Total: -3.70 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -71.92 3.91 -68.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014094621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.983 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds