Wall clock time and date at job start Tue Mar 31 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00079 * 2 1 4 4 C 1.50700 * 109.47016 * 293.95536 * 3 2 1 5 5 C 1.38233 * 120.00875 * 105.00175 * 4 3 2 6 6 C 1.38225 * 120.01539 * 179.70369 * 5 4 3 7 7 C 1.38258 * 120.02301 * 0.04195 * 6 5 4 8 8 C 1.38190 * 120.01673 * 359.97438 * 7 6 5 9 9 C 1.38341 * 120.00683 * 284.72606 * 4 3 2 10 10 Cl 1.73598 * 120.01122 * 0.24872 * 9 4 3 11 11 C 1.46900 * 111.00267 * 123.95199 * 2 1 3 12 12 C 1.52999 * 109.47148 * 160.72283 * 11 2 1 13 13 H 1.09000 * 109.47151 * 54.21816 * 12 11 2 14 14 O 1.42904 * 109.47378 * 294.21302 * 12 11 2 15 15 C 1.53005 * 109.46922 * 174.21695 * 12 11 2 16 16 O 1.42900 * 109.46848 * 185.00072 * 15 12 11 17 17 C 1.35673 * 116.99882 * 179.97438 * 16 15 12 18 18 C 1.39314 * 119.81938 * 359.72951 * 17 16 15 19 19 C 1.36437 * 120.18557 * 179.76472 * 18 17 16 20 20 C 1.40834 * 119.81321 * 0.50362 * 19 18 17 21 21 C 1.41211 * 120.18107 * 179.72400 * 20 19 18 22 22 H 1.08001 * 120.00046 * 153.31521 * 21 20 19 23 23 C 1.39892 * 119.99734 * 333.31814 * 21 20 19 24 24 N 1.30872 * 120.00321 * 343.05963 * 23 21 20 25 25 Si 1.86800 * 119.99580 * 163.05298 * 23 21 20 26 26 H 1.48501 * 109.46930 * 94.98322 * 25 23 21 27 27 H 1.48500 * 109.47325 * 214.97767 * 25 23 21 28 28 H 1.48496 * 109.47437 * 334.98071 * 25 23 21 29 29 C 1.40837 * 119.64074 * 359.74519 * 20 19 18 30 30 C 1.36443 * 119.81022 * 0.02562 * 29 20 19 31 31 H 1.09002 * 109.47412 * 65.58784 * 1 2 3 32 32 H 1.08997 * 109.47077 * 185.58738 * 1 2 3 33 33 H 1.09003 * 109.46776 * 305.58651 * 1 2 3 34 34 H 1.09002 * 109.47204 * 173.96032 * 3 2 1 35 35 H 1.08993 * 109.47270 * 53.95214 * 3 2 1 36 36 H 1.07997 * 119.98986 * 359.72101 * 5 4 3 37 37 H 1.08002 * 119.98617 * 180.02562 * 6 5 4 38 38 H 1.08000 * 119.98880 * 179.97438 * 7 6 5 39 39 H 1.08001 * 120.00616 * 180.02562 * 8 7 6 40 40 H 1.08994 * 109.47085 * 280.72232 * 11 2 1 41 41 H 1.09002 * 109.46947 * 40.72229 * 11 2 1 42 42 H 0.96699 * 113.99923 * 300.00558 * 14 12 11 43 43 H 1.09002 * 109.46944 * 304.99649 * 15 12 11 44 44 H 1.08994 * 109.47368 * 65.00046 * 15 12 11 45 45 H 1.08005 * 119.90272 * 0.02562 * 18 17 16 46 46 H 1.08000 * 120.09275 * 180.25232 * 19 18 17 47 47 H 0.97005 * 120.00131 * 179.97438 * 24 23 21 48 48 H 1.07989 * 120.09259 * 179.97438 * 29 20 19 49 49 H 1.07999 * 119.90759 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.6298 2.9935 -1.3303 6 6 0.3049 3.6178 -2.5200 7 6 0.9864 3.2955 -3.6789 8 6 1.9932 2.3493 -3.6485 9 6 2.3194 1.7246 -2.4577 10 17 3.5847 0.5367 -2.4184 11 6 1.9955 -0.7659 1.1376 12 6 3.4494 -1.1543 0.8618 13 1 4.0251 -0.2603 0.6221 14 8 3.4990 -2.0626 -0.2404 15 6 4.0422 -1.8252 2.1025 16 8 5.4312 -2.0827 1.8870 17 6 6.1114 -2.6784 2.8985 18 6 5.4502 -3.0035 4.0808 19 6 6.1258 -3.6071 5.1010 20 6 7.4979 -3.8918 4.9603 21 6 8.2061 -4.5110 6.0135 22 1 9.0804 -5.1075 5.7989 23 6 7.7750 -4.3518 7.3348 24 7 6.9429 -3.3889 7.6401 25 14 8.3869 -5.5138 8.6632 26 1 9.5594 -4.9108 9.3466 27 1 7.3045 -5.7489 9.6523 28 1 8.7834 -6.8054 8.0469 29 6 8.1600 -3.5552 3.7637 30 6 7.4686 -2.9562 2.7514 31 1 -0.3634 0.4247 -0.9358 32 1 -0.3633 -1.0228 0.1001 33 1 -0.3633 0.5981 0.8358 34 1 3.0797 1.3444 0.1081 35 1 1.5611 1.9273 0.8308 36 1 0.0969 3.2453 -0.4253 37 1 -0.4817 4.3574 -2.5442 38 1 0.7319 3.7833 -4.6082 39 1 2.5257 2.0980 -4.5538 40 1 1.9472 -0.1561 2.0397 41 1 1.3986 -1.6674 1.2760 42 1 3.0069 -2.8825 -0.0968 43 1 3.9240 -1.1667 2.9631 44 1 3.5233 -2.7652 2.2902 45 1 4.3988 -2.7809 4.1885 46 1 5.6108 -3.8621 6.0154 47 1 6.6437 -3.2788 8.5563 48 1 9.2120 -3.7698 3.6482 49 1 7.9749 -2.6970 1.8333 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014200892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:26 Heat of formation + Delta-G solvation = -60.359912 kcal Electronic energy + Delta-G solvation = -30662.641732 eV Core-core repulsion = 26386.852536 eV Total energy + Delta-G solvation = -4275.789196 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.139 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.76924 -40.45739 -39.15442 -38.01497 -37.15000 -36.81811 -35.18951 -32.89103 -31.78701 -31.57542 -31.49309 -30.72904 -28.12785 -27.52156 -26.42530 -24.16907 -23.56778 -23.15619 -22.58544 -22.01319 -21.61779 -19.26973 -18.66754 -18.00887 -17.74326 -17.35543 -16.91108 -16.81596 -16.45344 -16.13881 -16.04523 -15.76037 -15.54524 -15.39705 -14.87155 -14.75485 -14.62242 -14.20639 -14.15151 -14.07017 -13.77517 -13.73627 -13.47739 -13.21846 -13.00470 -12.78542 -12.73681 -12.71468 -12.60087 -12.31624 -12.29684 -12.24943 -12.11987 -11.83565 -11.68519 -11.58009 -11.45137 -11.22116 -10.89306 -10.86978 -9.85814 -9.58044 -9.54423 -9.21039 -8.89430 -8.59948 -6.23457 0.25602 0.33162 0.93139 1.03042 1.39444 1.43493 1.49016 1.55129 2.23037 2.35916 2.68681 2.72620 3.15359 3.58414 3.69155 3.69917 3.82791 3.90588 4.00940 4.10315 4.16044 4.26133 4.27026 4.30133 4.37886 4.44789 4.46982 4.48324 4.55257 4.61274 4.69656 4.73914 4.82503 4.87441 4.98969 5.01729 5.05038 5.07942 5.14848 5.35591 5.35836 5.44327 5.51024 5.51319 5.65496 5.90725 5.95468 6.00896 6.05523 6.10052 6.23121 6.55878 6.79025 6.95056 6.96670 7.09854 8.37825 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.001619 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.383689 B =17291.784688 C =17925.226708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.529 5.529 3 C 0.090 3.910 4 C -0.084 4.084 5 C -0.106 4.106 6 C -0.118 4.118 7 C -0.109 4.109 8 C -0.129 4.129 9 C -0.036 4.036 10 Cl -0.065 7.065 11 C 0.035 3.965 12 C 0.133 3.867 13 H 0.085 0.915 14 O -0.550 6.550 15 C 0.030 3.970 16 O -0.329 6.329 17 C 0.003 3.997 18 C -0.176 4.176 19 C -0.150 4.150 20 C 0.053 3.947 21 C -0.501 4.501 22 H 0.075 0.925 23 C 0.034 3.966 24 N -0.834 5.834 25 Si 0.981 3.019 26 H -0.264 1.264 27 H -0.266 1.266 28 H -0.260 1.260 29 C -0.203 4.203 30 C -0.125 4.125 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.136 0.864 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.379 0.621 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.157 13.151 -16.662 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.253 5.253 3 C -0.037 4.037 4 C -0.085 4.085 5 C -0.125 4.125 6 C -0.136 4.136 7 C -0.127 4.127 8 C -0.148 4.148 9 C -0.063 4.063 10 Cl -0.036 7.036 11 C -0.093 4.093 12 C 0.073 3.927 13 H 0.103 0.897 14 O -0.355 6.355 15 C -0.046 4.046 16 O -0.244 6.244 17 C -0.041 4.041 18 C -0.194 4.194 19 C -0.170 4.170 20 C 0.051 3.949 21 C -0.531 4.531 22 H 0.093 0.907 23 C -0.179 4.179 24 N -0.461 5.461 25 Si 0.802 3.198 26 H -0.189 1.189 27 H -0.191 1.191 28 H -0.183 1.183 29 C -0.222 4.222 30 C -0.144 4.144 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.154 0.846 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.227 0.773 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.138 0.862 46 H 0.123 0.877 47 H 0.097 0.903 48 H 0.127 0.873 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.574 13.448 -17.327 28.742 hybrid contribution 0.002 -0.611 1.930 2.024 sum -18.572 12.837 -15.397 27.328 Atomic orbital electron populations 1.22404 0.85868 1.02424 1.01105 1.61738 1.08566 1.12215 1.42767 1.21092 1.00492 0.88521 0.93595 1.19707 0.96926 0.97942 0.93955 1.21283 0.96024 0.95448 0.99711 1.21545 1.00191 0.99897 0.91999 1.21449 0.94695 0.96529 0.99998 1.21311 0.99246 0.97543 0.96659 1.21123 0.94511 0.94986 0.95692 1.98433 1.50365 1.56070 1.98704 1.22639 0.94810 0.99647 0.92179 1.21659 0.94687 0.92274 0.84114 0.89727 1.86645 1.76624 1.32115 1.40128 1.23516 0.80935 1.00542 0.99624 1.85878 1.22794 1.76661 1.39105 1.18723 0.92328 1.04429 0.88612 1.20801 0.99514 1.05035 0.94088 1.20868 0.94403 1.03588 0.98107 1.17960 0.92345 0.91699 0.92856 1.19693 1.12373 1.29363 0.91708 0.90713 1.26699 0.93868 0.95532 1.01823 1.69882 1.27921 1.26584 1.21741 0.85211 0.78792 0.78924 0.76877 1.18901 1.19052 1.18346 1.20808 0.98734 1.06889 0.95782 1.19899 0.91875 1.03230 0.99406 0.91645 0.90705 0.94644 0.90998 0.92473 0.83832 0.82875 0.82851 0.84588 0.92690 0.88334 0.77281 0.92170 0.91668 0.86232 0.87680 0.90291 0.87338 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.27 127.69 1.18 1.59 16 2 N -0.53 -9.52 4.55 -927.07 -4.22 -13.74 16 3 C 0.09 1.65 4.26 85.56 0.36 2.02 16 4 C -0.08 -1.50 4.44 -19.84 -0.09 -1.59 16 5 C -0.11 -1.37 9.30 22.27 0.21 -1.17 16 6 C -0.12 -1.24 10.05 22.27 0.22 -1.02 16 7 C -0.11 -1.26 10.04 22.26 0.22 -1.04 16 8 C -0.13 -2.11 9.83 22.29 0.22 -1.89 16 9 C -0.04 -0.73 6.31 22.32 0.14 -0.59 16 10 Cl -0.06 -1.61 27.56 -2.72 -0.07 -1.68 16 11 C 0.04 0.64 4.63 86.30 0.40 1.04 16 12 C 0.13 3.29 3.34 30.60 0.10 3.40 16 13 H 0.08 2.42 6.62 -2.39 -0.02 2.40 16 14 O -0.55 -14.63 13.26 -144.34 -1.91 -16.55 16 15 C 0.03 0.91 4.37 71.98 0.31 1.22 16 16 O -0.33 -13.37 10.09 -85.25 -0.86 -14.23 16 17 C 0.00 0.14 6.71 22.79 0.15 0.29 16 18 C -0.18 -8.22 8.96 22.11 0.20 -8.02 16 19 C -0.15 -7.98 8.62 22.48 0.19 -7.78 16 20 C 0.05 2.96 5.55 -21.28 -0.12 2.84 16 21 C -0.50 -27.53 9.03 23.40 0.21 -27.31 16 22 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 23 C 0.03 1.75 5.14 85.24 0.44 2.19 16 24 N -0.83 -44.07 11.05 21.82 0.24 -43.82 16 25 Si 0.98 38.64 29.59 68.60 2.03 40.67 16 26 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 27 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 28 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 29 C -0.20 -10.34 9.74 22.49 0.22 -10.12 16 30 C -0.13 -5.99 9.92 22.11 0.22 -5.77 16 31 H 0.06 0.96 7.22 -2.39 -0.02 0.94 16 32 H 0.07 0.94 7.84 -2.39 -0.02 0.92 16 33 H 0.04 0.41 8.07 -2.39 -0.02 0.39 16 34 H 0.07 1.59 5.97 -2.39 -0.01 1.58 16 35 H 0.06 0.88 7.88 -2.39 -0.02 0.86 16 36 H 0.14 1.28 8.00 -2.91 -0.02 1.26 16 37 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.05 0.92 8.00 -2.39 -0.02 0.90 16 41 H 0.10 1.46 7.75 -2.39 -0.02 1.44 16 42 H 0.38 7.62 9.05 -74.06 -0.67 6.95 16 43 H 0.06 1.76 7.63 -2.39 -0.02 1.74 16 44 H 0.07 1.80 7.66 -2.39 -0.02 1.78 16 45 H 0.12 4.80 6.27 -2.91 -0.02 4.79 16 46 H 0.11 5.77 6.29 -2.91 -0.02 5.75 16 47 H 0.29 13.65 8.30 -92.70 -0.77 12.88 16 48 H 0.11 5.17 8.06 -2.92 -0.02 5.15 16 49 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -67.10 417.67 0.31 -66.79 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.30 Total: 34.27 kcal Atomic # 6 Polarization: -56.52 SS G_CDS: 4.81 Total: -51.71 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -3.98 Total: -57.57 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.77 Total: -30.77 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.07 Total: -1.68 kcal Total: -67.10 0.31 -66.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014200892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.429 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds