Wall clock time and date at job start Tue Mar 31 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21289 * 119.99557 * 2 1 4 4 N 1.34777 * 120.00108 * 179.97438 * 2 1 3 5 5 C 1.38940 * 120.10372 * 359.97438 * 4 2 1 6 6 C 1.33823 * 119.58241 * 147.93099 * 5 4 2 7 7 C 1.47555 * 119.21744 * 1.37548 * 6 5 4 8 8 C 1.39472 * 120.75047 * 193.83240 * 7 6 5 9 9 C 1.38016 * 119.64425 * 179.26289 * 8 7 6 10 10 C 1.38389 * 120.22213 * 359.91241 * 9 8 7 11 11 C 1.38439 * 120.38463 * 0.40552 * 10 9 8 12 12 C 1.37757 * 119.95120 * 359.93132 * 11 10 9 13 13 C 1.46712 * 120.10648 * 180.02562 * 4 2 1 14 14 H 1.09008 * 109.54590 * 343.35128 * 13 4 2 15 15 C 1.52998 * 109.54673 * 103.53349 * 13 4 2 16 16 C 1.50697 * 109.47200 * 294.99763 * 15 13 4 17 17 O 1.21284 * 120.00053 * 0.02562 * 16 15 13 18 18 N 1.34775 * 120.00137 * 179.97438 * 16 15 13 19 19 C 1.39241 * 120.00017 * 185.04662 * 18 16 15 20 20 C 1.39481 * 119.83454 * 145.41434 * 19 18 16 21 21 C 1.36374 * 120.17016 * 180.02562 * 20 19 18 22 22 C 1.40864 * 119.82937 * 359.97438 * 21 20 19 23 23 C 1.41151 * 120.16546 * 180.02562 * 22 21 20 24 24 H 1.08001 * 119.99838 * 329.79491 * 23 22 21 25 25 C 1.39908 * 120.00319 * 149.80071 * 23 22 21 26 26 N 1.30871 * 119.99517 * 335.11071 * 25 23 22 27 27 Si 1.86797 * 120.00139 * 155.11239 * 25 23 22 28 28 H 1.48493 * 109.47198 * 59.99804 * 27 25 23 29 29 H 1.48498 * 109.46988 * 299.99735 * 27 25 23 30 30 H 1.48503 * 109.46901 * 179.97438 * 27 25 23 31 31 C 1.40871 * 119.67138 * 0.27037 * 22 21 20 32 32 C 1.36378 * 119.82965 * 359.44296 * 31 22 21 33 33 H 1.09001 * 109.46651 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46859 * 300.00097 * 1 2 3 35 35 H 1.09001 * 109.46830 * 60.00226 * 1 2 3 36 36 H 1.07998 * 120.21385 * 327.95521 * 5 4 2 37 37 H 1.08003 * 120.39218 * 181.39996 * 6 5 4 38 38 H 1.08004 * 120.17357 * 359.22257 * 8 7 6 39 39 H 1.07989 * 119.88747 * 179.97438 * 9 8 7 40 40 H 1.07998 * 119.80450 * 180.38992 * 10 9 8 41 41 H 1.08001 * 120.02340 * 179.90740 * 11 10 9 42 42 H 1.08998 * 109.47192 * 175.00204 * 15 13 4 43 43 H 1.08997 * 109.46859 * 55.00001 * 15 13 4 44 44 H 0.97001 * 120.00241 * 5.04584 * 18 16 15 45 45 H 1.08004 * 119.91391 * 0.02562 * 20 19 18 46 46 H 1.08004 * 120.08640 * 179.97438 * 21 20 19 47 47 H 0.96999 * 120.00829 * 354.47334 * 26 25 23 48 48 H 1.08006 * 120.08841 * 179.70790 * 31 22 21 49 49 H 1.07992 * 119.91801 * 180.27375 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4885 -2.3717 0.0016 6 6 2.0139 -3.4364 -0.6158 7 6 3.3358 -3.3156 -1.2602 8 6 3.7887 -4.2921 -2.1472 9 6 5.0225 -4.1485 -2.7488 10 6 5.8061 -3.0411 -2.4754 11 6 5.3646 -2.0720 -1.5909 12 6 4.1380 -2.2071 -0.9786 13 6 3.6481 -1.1699 0.0011 14 1 4.0147 -0.1864 -0.2933 15 6 4.1588 -1.5079 1.4031 16 6 3.7627 -0.4128 2.3596 17 8 3.1335 0.5436 1.9594 18 7 4.1069 -0.4968 3.6600 19 6 3.6523 0.4601 4.5636 20 6 3.3494 0.0888 5.8736 21 6 2.9031 1.0203 6.7641 22 6 2.7489 2.3603 6.3583 23 6 2.2881 3.3303 7.2743 24 1 1.6170 3.0449 8.0709 25 6 2.7006 4.6614 7.1503 26 7 3.8298 4.9434 6.5519 27 14 1.6396 6.0361 7.8389 28 1 1.4729 5.8470 9.3023 29 1 0.3083 6.0104 7.1816 30 1 2.2946 7.3436 7.5806 31 6 3.0520 2.7266 5.0322 32 6 3.5028 1.7852 4.1545 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 0.5320 -2.4483 0.4972 37 1 1.4766 -4.3729 -0.6424 38 1 3.1773 -5.1563 -2.3616 39 1 5.3772 -4.9024 -3.4358 40 1 6.7677 -2.9324 -2.9548 41 1 5.9815 -1.2108 -1.3807 42 1 5.2450 -1.5969 1.3825 43 1 3.7230 -2.4517 1.7308 44 1 4.6713 -1.2237 3.9664 45 1 3.4685 -0.9389 6.1834 46 1 2.6685 0.7312 7.7780 47 1 4.4190 4.2281 6.2657 48 1 2.9317 3.7513 4.7125 49 1 3.7398 2.0653 3.1389 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016495910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:47 Heat of formation + Delta-G solvation = 0.509524 kcal Electronic energy + Delta-G solvation = -33822.565007 eV Core-core repulsion = 29486.422247 eV Total energy + Delta-G solvation = -4336.142760 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.24154 -39.45794 -39.00038 -37.39975 -36.54146 -34.60217 -33.55149 -32.92542 -32.40347 -30.51110 -29.66558 -29.51228 -29.17206 -28.16180 -25.21304 -24.09753 -23.38057 -22.28499 -21.54816 -21.08937 -20.89175 -19.60049 -18.17579 -17.87454 -17.70320 -17.21476 -16.75757 -16.26687 -15.82285 -15.61964 -15.10343 -14.75009 -14.66171 -14.48512 -14.23528 -14.05758 -13.82888 -13.52939 -13.40467 -13.31886 -13.12748 -12.82441 -12.52054 -12.43600 -12.30728 -12.26265 -12.06376 -11.91668 -11.76821 -11.57968 -11.40035 -11.11036 -11.09068 -11.00017 -10.87113 -10.38089 -9.83715 -9.72463 -9.65071 -9.43385 -9.35704 -9.11296 -8.84727 -8.80193 -7.80906 -7.71886 -7.22509 -6.98336 -4.34584 0.64163 1.08424 2.06769 2.55668 2.75589 2.92819 2.98116 3.13967 3.20419 3.36573 3.40747 3.53081 3.73758 4.07039 4.36096 4.42525 4.57538 4.62080 4.64365 4.76745 4.79218 5.01411 5.05696 5.08878 5.15759 5.19844 5.26365 5.38637 5.43892 5.54737 5.58765 5.60397 5.69839 5.75084 5.85518 5.96604 6.02962 6.23468 6.24895 6.30802 6.31886 6.61187 6.69736 6.71102 6.87985 6.94919 7.16227 7.39594 7.42496 7.52228 7.79533 7.83449 7.87287 8.19725 8.23970 8.26475 8.33729 8.73273 8.86730 8.96348 10.12040 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.002129 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.949766 B =13147.352281 C =13626.146914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.475 6.475 4 N -0.556 5.556 5 C 0.102 3.898 6 C -0.191 4.191 7 C -0.028 4.028 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.125 4.125 11 C -0.101 4.101 12 C -0.099 4.099 13 C 0.201 3.799 14 H 0.118 0.882 15 C -0.148 4.148 16 C 0.487 3.513 17 O -0.500 6.500 18 N -0.654 5.654 19 C -0.012 4.012 20 C -0.097 4.097 21 C -0.216 4.216 22 C 0.093 3.907 23 C -0.525 4.525 24 H 0.075 0.925 25 C 0.038 3.962 26 N -0.797 5.797 27 Si 1.065 2.935 28 H -0.277 1.277 29 H -0.275 1.275 30 H -0.274 1.274 31 C -0.204 4.204 32 C -0.068 4.068 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.392 0.608 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.297 0.703 48 H 0.104 0.896 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -19.203 -16.268 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.303 3.697 3 O -0.345 6.345 4 N -0.281 5.281 5 C -0.012 4.012 6 C -0.214 4.214 7 C -0.029 4.029 8 C -0.132 4.132 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.119 4.119 12 C -0.101 4.101 13 C 0.097 3.903 14 H 0.136 0.864 15 C -0.189 4.189 16 C 0.273 3.727 17 O -0.374 6.374 18 N -0.298 5.298 19 C -0.104 4.104 20 C -0.118 4.118 21 C -0.236 4.236 22 C 0.090 3.910 23 C -0.553 4.553 24 H 0.093 0.907 25 C -0.184 4.184 26 N -0.420 5.420 27 Si 0.889 3.111 28 H -0.202 1.202 29 H -0.200 1.200 30 H -0.199 1.199 31 C -0.224 4.224 32 C -0.088 4.088 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.716 -16.104 -16.457 23.037 hybrid contribution 0.483 -2.488 0.183 2.541 sum -0.232 -18.592 -16.274 24.709 Atomic orbital electron populations 1.21977 0.91582 1.04192 1.05550 1.20780 0.90400 0.82817 0.75694 1.90781 1.69955 1.30124 1.43615 1.45649 1.06186 1.05584 1.70641 1.21775 0.97681 0.85457 0.96312 1.21699 0.96810 0.99769 1.03125 1.18669 0.93901 0.93592 0.96720 1.21147 0.96300 0.98546 0.97216 1.21106 0.94571 0.97926 0.99782 1.21156 1.00085 0.94538 0.98547 1.20864 0.95261 0.99355 0.96462 1.20110 0.95263 0.95116 0.99567 1.19663 0.79223 0.99341 0.92055 0.86437 1.22082 1.03203 0.99231 0.94423 1.20497 0.81064 0.88136 0.82991 1.90894 1.38412 1.31996 1.76122 1.42954 1.50789 1.28519 1.07527 1.17103 1.14917 0.88423 0.89978 1.20096 1.01365 0.97367 0.92938 1.20544 1.10663 0.94458 0.97910 1.17728 0.89156 0.92278 0.91845 1.20461 1.27219 0.94439 1.13218 0.90737 1.26984 0.96686 1.00632 0.94065 1.70461 1.06854 1.39770 1.24964 0.83642 0.75805 0.74986 0.76698 1.20230 1.20028 1.19894 1.20824 1.09482 0.98742 0.93312 1.20545 0.98297 0.91031 0.98891 0.90543 0.88336 0.88803 0.83203 0.84507 0.85767 0.86040 0.85943 0.85624 0.88067 0.88876 0.77510 0.89185 0.88610 0.88938 0.87831 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.08 36.01 0.36 -1.54 16 2 C 0.51 7.86 6.52 -10.98 -0.07 7.79 16 3 O -0.47 -9.55 13.92 -18.78 -0.26 -9.81 16 4 N -0.56 -7.18 2.36 -109.64 -0.26 -7.44 16 5 C 0.10 0.98 9.00 -15.88 -0.14 0.84 16 6 C -0.19 -1.64 9.99 -37.33 -0.37 -2.01 16 7 C -0.03 -0.28 5.83 -105.09 -0.61 -0.89 16 8 C -0.11 -0.95 9.82 -39.20 -0.39 -1.34 16 9 C -0.12 -0.91 10.03 -39.61 -0.40 -1.30 16 10 C -0.13 -1.04 10.04 -39.45 -0.40 -1.44 16 11 C -0.10 -0.99 9.74 -39.68 -0.39 -1.37 16 12 C -0.10 -1.09 5.08 -104.18 -0.53 -1.62 16 13 C 0.20 2.60 2.10 -68.89 -0.14 2.45 16 14 H 0.12 1.82 6.91 -51.92 -0.36 1.46 16 15 C -0.15 -1.82 5.27 -27.89 -0.15 -1.97 16 16 C 0.49 8.40 7.53 -10.99 -0.08 8.31 16 17 O -0.50 -10.67 8.99 -18.77 -0.17 -10.84 16 18 N -0.65 -11.44 5.31 -9.74 -0.05 -11.49 16 19 C -0.01 -0.27 6.32 -83.57 -0.53 -0.80 16 20 C -0.10 -2.15 9.90 -39.79 -0.39 -2.54 16 21 C -0.22 -5.31 9.74 -39.26 -0.38 -5.69 16 22 C 0.09 2.52 5.18 -106.80 -0.55 1.97 16 23 C -0.53 -14.28 8.95 -37.85 -0.34 -14.62 16 24 H 0.07 1.96 7.96 -52.49 -0.42 1.54 16 25 C 0.04 0.99 4.91 -17.34 -0.09 0.91 16 26 N -0.80 -21.96 12.50 55.55 0.69 -21.27 16 27 Si 1.06 22.29 30.00 -169.99 -5.10 17.20 16 28 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 29 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 30 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 31 C -0.20 -5.53 7.95 -39.26 -0.31 -5.84 16 32 C -0.07 -1.71 8.62 -39.79 -0.34 -2.05 16 33 H 0.08 0.59 5.61 -51.93 -0.29 0.30 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.15 1.06 6.53 -52.49 -0.34 0.72 16 37 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.02 7.97 -51.93 -0.41 0.61 16 44 H 0.39 5.39 8.82 -40.82 -0.36 5.03 16 45 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 47 H 0.30 8.43 6.87 -40.82 -0.28 8.15 16 48 H 0.10 2.94 6.86 -52.48 -0.36 2.58 16 49 H 0.11 2.90 6.15 -52.49 -0.32 2.58 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -34.52 401.51 -11.51 -46.03 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.17 Total: 14.34 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -6.24 Total: -22.77 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.38 Total: -40.20 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.43 Total: -20.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.10 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.52 -11.51 -46.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016495910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.542 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds