Wall clock time and date at job start Tue Mar 31 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21289 * 119.99557 * 2 1 4 4 N 1.34777 * 120.00108 * 179.97438 * 2 1 3 5 5 C 1.38940 * 120.10372 * 359.97438 * 4 2 1 6 6 C 1.33823 * 119.58241 * 147.93099 * 5 4 2 7 7 C 1.47555 * 119.21744 * 1.37548 * 6 5 4 8 8 C 1.39472 * 120.75047 * 193.83240 * 7 6 5 9 9 C 1.38016 * 119.64425 * 179.26289 * 8 7 6 10 10 C 1.38389 * 120.22213 * 359.91241 * 9 8 7 11 11 C 1.38439 * 120.38463 * 0.40552 * 10 9 8 12 12 C 1.37757 * 119.95120 * 359.93132 * 11 10 9 13 13 C 1.46712 * 120.10648 * 180.02562 * 4 2 1 14 14 H 1.09008 * 109.54590 * 343.35128 * 13 4 2 15 15 C 1.52998 * 109.54673 * 103.53349 * 13 4 2 16 16 C 1.50697 * 109.47200 * 294.99763 * 15 13 4 17 17 O 1.21284 * 120.00053 * 0.02562 * 16 15 13 18 18 N 1.34775 * 120.00137 * 179.97438 * 16 15 13 19 19 C 1.39241 * 120.00017 * 185.04662 * 18 16 15 20 20 C 1.39481 * 119.83454 * 145.41434 * 19 18 16 21 21 C 1.36374 * 120.17016 * 180.02562 * 20 19 18 22 22 C 1.40864 * 119.82937 * 359.97438 * 21 20 19 23 23 C 1.41151 * 120.16546 * 180.02562 * 22 21 20 24 24 H 1.08001 * 119.99838 * 329.79491 * 23 22 21 25 25 C 1.39908 * 120.00319 * 149.80071 * 23 22 21 26 26 N 1.30871 * 119.99517 * 335.11071 * 25 23 22 27 27 Si 1.86797 * 120.00139 * 155.11239 * 25 23 22 28 28 H 1.48493 * 109.47198 * 59.99804 * 27 25 23 29 29 H 1.48498 * 109.46988 * 299.99735 * 27 25 23 30 30 H 1.48503 * 109.46901 * 179.97438 * 27 25 23 31 31 C 1.40871 * 119.67138 * 0.27037 * 22 21 20 32 32 C 1.36378 * 119.82965 * 359.44296 * 31 22 21 33 33 H 1.09001 * 109.46651 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46859 * 300.00097 * 1 2 3 35 35 H 1.09001 * 109.46830 * 60.00226 * 1 2 3 36 36 H 1.07998 * 120.21385 * 327.95521 * 5 4 2 37 37 H 1.08003 * 120.39218 * 181.39996 * 6 5 4 38 38 H 1.08004 * 120.17357 * 359.22257 * 8 7 6 39 39 H 1.07989 * 119.88747 * 179.97438 * 9 8 7 40 40 H 1.07998 * 119.80450 * 180.38992 * 10 9 8 41 41 H 1.08001 * 120.02340 * 179.90740 * 11 10 9 42 42 H 1.08998 * 109.47192 * 175.00204 * 15 13 4 43 43 H 1.08997 * 109.46859 * 55.00001 * 15 13 4 44 44 H 0.97001 * 120.00241 * 5.04584 * 18 16 15 45 45 H 1.08004 * 119.91391 * 0.02562 * 20 19 18 46 46 H 1.08004 * 120.08640 * 179.97438 * 21 20 19 47 47 H 0.96999 * 120.00829 * 354.47334 * 26 25 23 48 48 H 1.08006 * 120.08841 * 179.70790 * 31 22 21 49 49 H 1.07992 * 119.91801 * 180.27375 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4885 -2.3717 0.0016 6 6 2.0139 -3.4364 -0.6158 7 6 3.3358 -3.3156 -1.2602 8 6 3.7887 -4.2921 -2.1472 9 6 5.0225 -4.1485 -2.7488 10 6 5.8061 -3.0411 -2.4754 11 6 5.3646 -2.0720 -1.5909 12 6 4.1380 -2.2071 -0.9786 13 6 3.6481 -1.1699 0.0011 14 1 4.0147 -0.1864 -0.2933 15 6 4.1588 -1.5079 1.4031 16 6 3.7627 -0.4128 2.3596 17 8 3.1335 0.5436 1.9594 18 7 4.1069 -0.4968 3.6600 19 6 3.6523 0.4601 4.5636 20 6 3.3494 0.0888 5.8736 21 6 2.9031 1.0203 6.7641 22 6 2.7489 2.3603 6.3583 23 6 2.2881 3.3303 7.2743 24 1 1.6170 3.0449 8.0709 25 6 2.7006 4.6614 7.1503 26 7 3.8298 4.9434 6.5519 27 14 1.6396 6.0361 7.8389 28 1 1.4729 5.8470 9.3023 29 1 0.3083 6.0104 7.1816 30 1 2.2946 7.3436 7.5806 31 6 3.0520 2.7266 5.0322 32 6 3.5028 1.7852 4.1545 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 0.5320 -2.4483 0.4972 37 1 1.4766 -4.3729 -0.6424 38 1 3.1773 -5.1563 -2.3616 39 1 5.3772 -4.9024 -3.4358 40 1 6.7677 -2.9324 -2.9548 41 1 5.9815 -1.2108 -1.3807 42 1 5.2450 -1.5969 1.3825 43 1 3.7230 -2.4517 1.7308 44 1 4.6713 -1.2237 3.9664 45 1 3.4685 -0.9389 6.1834 46 1 2.6685 0.7312 7.7780 47 1 4.4190 4.2281 6.2657 48 1 2.9317 3.7513 4.7125 49 1 3.7398 2.0653 3.1389 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016495910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:45 Heat of formation + Delta-G solvation = -17.893458 kcal Electronic energy + Delta-G solvation = -33823.363020 eV Core-core repulsion = 29486.422247 eV Total energy + Delta-G solvation = -4336.940773 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.22111 -40.95744 -39.91961 -39.20255 -37.52329 -36.37304 -34.75776 -34.42013 -33.25019 -31.70648 -31.32581 -30.70780 -30.30057 -29.43171 -26.81378 -25.36342 -24.11095 -23.48948 -23.08404 -22.67758 -21.89961 -21.15691 -19.86335 -18.97440 -18.77878 -18.23334 -18.14715 -17.62592 -16.86853 -16.48974 -16.47159 -16.20970 -15.79835 -15.66189 -15.61329 -15.34671 -15.24216 -14.80323 -14.49412 -14.35850 -14.28047 -14.07657 -13.96594 -13.79250 -13.70320 -13.42835 -13.26383 -13.14170 -13.03155 -12.92690 -12.70771 -12.63015 -12.38433 -12.01297 -11.82540 -11.74669 -11.66502 -11.54135 -11.12202 -10.84104 -10.75475 -10.51454 -10.23684 -9.77666 -9.69964 -9.24967 -8.90346 -8.59222 -6.40895 -0.06772 0.40182 0.71864 0.91972 1.29438 1.47269 1.55288 1.76221 1.78598 1.87134 2.01724 2.27758 2.32548 2.68283 2.91990 3.43664 3.49850 3.66757 3.71321 3.77889 3.93306 4.05194 4.19041 4.22303 4.26583 4.32724 4.34049 4.40587 4.48693 4.49074 4.53563 4.54237 4.69947 4.74431 4.84725 4.96884 4.99025 5.03407 5.04794 5.09118 5.27539 5.28587 5.42091 5.52893 5.58059 5.60966 5.62801 5.74642 5.82875 5.83637 5.93867 6.06209 6.22998 6.35524 6.48768 6.68939 6.75079 6.93873 7.16929 7.45839 8.04463 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.002129 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.949766 B =13147.352281 C =13626.146914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.543 6.543 4 N -0.557 5.557 5 C 0.072 3.928 6 C -0.166 4.166 7 C -0.049 4.049 8 C -0.110 4.110 9 C -0.116 4.116 10 C -0.126 4.126 11 C -0.118 4.118 12 C -0.114 4.114 13 C 0.200 3.800 14 H 0.077 0.923 15 C -0.130 4.130 16 C 0.483 3.517 17 O -0.539 6.539 18 N -0.648 5.648 19 C 0.013 3.987 20 C -0.091 4.091 21 C -0.220 4.220 22 C 0.063 3.937 23 C -0.559 4.559 24 H 0.077 0.923 25 C -0.001 4.001 26 N -0.824 5.824 27 Si 1.117 2.883 28 H -0.251 1.251 29 H -0.267 1.267 30 H -0.274 1.274 31 C -0.222 4.222 32 C -0.084 4.084 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.416 0.584 45 H 0.139 0.861 46 H 0.111 0.889 47 H 0.279 0.721 48 H 0.073 0.927 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -24.173 -16.978 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.293 3.707 3 O -0.418 6.418 4 N -0.281 5.281 5 C -0.040 4.040 6 C -0.189 4.189 7 C -0.049 4.049 8 C -0.128 4.128 9 C -0.134 4.134 10 C -0.144 4.144 11 C -0.136 4.136 12 C -0.115 4.115 13 C 0.096 3.904 14 H 0.095 0.905 15 C -0.171 4.171 16 C 0.271 3.729 17 O -0.415 6.415 18 N -0.294 5.294 19 C -0.081 4.081 20 C -0.110 4.110 21 C -0.240 4.240 22 C 0.061 3.939 23 C -0.588 4.588 24 H 0.095 0.905 25 C -0.216 4.216 26 N -0.448 5.448 27 Si 0.933 3.067 28 H -0.174 1.174 29 H -0.192 1.192 30 H -0.199 1.199 31 C -0.243 4.243 32 C -0.104 4.104 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.193 0.807 37 H 0.189 0.811 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.253 0.747 45 H 0.157 0.843 46 H 0.129 0.871 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.239 -21.195 -17.176 27.309 hybrid contribution 0.774 -1.242 0.141 1.471 sum -0.464 -22.438 -17.035 28.175 Atomic orbital electron populations 1.21993 0.88673 1.06638 1.05338 1.21575 0.92034 0.82686 0.74450 1.90745 1.71465 1.32516 1.47086 1.45643 1.06215 1.06195 1.70044 1.22207 0.98989 0.84379 0.98395 1.22104 0.95800 1.00455 1.00507 1.18954 0.94514 0.93729 0.97753 1.21503 0.96631 0.98666 0.96002 1.21499 0.94250 0.98031 0.99579 1.21450 1.01001 0.94196 0.97778 1.21007 0.95278 1.00031 0.97291 1.20007 0.96172 0.95292 1.00025 1.19515 0.79754 0.98235 0.92926 0.90476 1.22027 1.04803 0.97713 0.92522 1.21437 0.79819 0.88594 0.83097 1.90932 1.39912 1.33958 1.76702 1.42912 1.51213 1.28131 1.07133 1.17186 1.11876 0.87997 0.90998 1.20471 0.99460 0.99191 0.91924 1.20835 1.10131 0.93783 0.99222 1.18021 0.90222 0.93973 0.91715 1.20660 1.28580 0.95491 1.14077 0.90519 1.28468 0.96745 1.03151 0.93264 1.70582 1.07901 1.38777 1.27518 0.83031 0.74191 0.71911 0.77539 1.17446 1.19195 1.19855 1.20668 1.11465 0.97840 0.94280 1.20516 0.99420 0.92640 0.97840 0.86713 0.89781 0.87673 0.80681 0.81060 0.83035 0.83298 0.84054 0.85894 0.85580 0.86377 0.74713 0.84332 0.87079 0.90960 0.90844 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 10.08 71.24 0.72 -2.96 16 2 C 0.50 16.06 6.52 87.66 0.57 16.63 16 3 O -0.54 -23.86 13.92 20.20 0.28 -23.57 16 4 N -0.56 -14.23 2.36 -619.17 -1.46 -15.69 16 5 C 0.07 1.19 9.00 82.56 0.74 1.93 16 6 C -0.17 -2.19 9.99 23.73 0.24 -1.96 16 7 C -0.05 -0.82 5.83 -20.17 -0.12 -0.94 16 8 C -0.11 -1.37 9.82 22.51 0.22 -1.15 16 9 C -0.12 -1.36 10.03 22.25 0.22 -1.14 16 10 C -0.13 -1.79 10.04 22.35 0.22 -1.56 16 11 C -0.12 -2.19 9.74 22.20 0.22 -1.97 16 12 C -0.11 -2.36 5.08 -19.58 -0.10 -2.46 16 13 C 0.20 5.21 2.10 44.25 0.09 5.30 16 14 H 0.08 2.62 6.91 -2.38 -0.02 2.61 16 15 C -0.13 -3.02 5.27 29.85 0.16 -2.86 16 16 C 0.48 16.56 7.53 87.66 0.66 17.22 16 17 O -0.54 -24.19 8.99 20.22 0.18 -24.01 16 18 N -0.65 -21.66 5.31 -303.11 -1.61 -23.27 16 19 C 0.01 0.58 6.32 38.57 0.24 0.82 16 20 C -0.09 -3.81 9.90 22.13 0.22 -3.59 16 21 C -0.22 -10.75 9.74 22.48 0.22 -10.53 16 22 C 0.06 3.59 5.18 -21.28 -0.11 3.48 16 23 C -0.56 -31.66 8.95 23.39 0.21 -31.45 16 24 H 0.08 4.15 7.96 -2.91 -0.02 4.13 16 25 C 0.00 -0.08 4.91 85.24 0.42 0.34 16 26 N -0.82 -48.16 12.50 21.82 0.27 -47.89 16 27 Si 1.12 46.08 30.00 68.60 2.06 48.14 16 28 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 29 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 30 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 31 C -0.22 -12.90 7.95 22.48 0.18 -12.72 16 32 C -0.08 -4.46 8.62 22.14 0.19 -4.27 16 33 H 0.11 1.53 5.61 -2.39 -0.01 1.52 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.18 1.86 6.53 -2.91 -0.02 1.84 16 37 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 39 H 0.15 0.93 8.06 -2.92 -0.02 0.90 16 40 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 42 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.12 2.20 7.97 -2.39 -0.02 2.18 16 44 H 0.42 10.08 8.82 -92.71 -0.82 9.26 16 45 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 46 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 47 H 0.28 17.02 6.87 -92.71 -0.64 16.38 16 48 H 0.07 4.59 6.86 -2.91 -0.02 4.57 16 49 H 0.09 5.29 6.15 -2.91 -0.02 5.27 16 Total: -1.00 -84.31 401.51 5.46 -78.86 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: 0.32 Total: 41.27 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 5.42 Total: -33.84 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.80 Total: -86.85 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: 0.46 Total: -47.58 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.06 Total: 48.14 kcal Total: -84.31 5.46 -78.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016495910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.965 kcal (2) G-P(sol) polarization free energy of solvation -84.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds