Wall clock time and date at job start Tue Mar 31 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21290 * 120.00003 * 2 1 4 4 N 1.34775 * 119.99807 * 180.02562 * 2 1 3 5 5 C 1.38926 * 120.09864 * 359.97438 * 4 2 1 6 6 C 1.33797 * 119.71422 * 211.43057 * 5 4 2 7 7 C 1.47552 * 119.30583 * 358.65969 * 6 5 4 8 8 C 1.39465 * 120.75537 * 166.60634 * 7 6 5 9 9 C 1.38025 * 119.63544 * 181.59225 * 8 7 6 10 10 C 1.38384 * 120.22665 * 0.55655 * 9 8 7 11 11 C 1.38451 * 120.38386 * 359.03122 * 10 9 8 12 12 C 1.37741 * 119.93683 * 0.29095 * 11 10 9 13 13 C 1.46730 * 120.09678 * 180.02562 * 4 2 1 14 14 H 1.09002 * 109.55209 * 16.73875 * 13 4 2 15 15 C 1.52999 * 109.55415 * 256.43305 * 13 4 2 16 16 C 1.50697 * 109.46973 * 65.51372 * 15 13 4 17 17 O 1.21284 * 120.00482 * 0.02562 * 16 15 13 18 18 N 1.34783 * 119.99765 * 179.97438 * 16 15 13 19 19 C 1.39234 * 119.99728 * 176.69689 * 18 16 15 20 20 C 1.39487 * 119.83091 * 217.49371 * 19 18 16 21 21 C 1.36384 * 120.16639 * 179.72098 * 20 19 18 22 22 C 1.40873 * 119.82569 * 0.57552 * 21 20 19 23 23 C 1.41147 * 120.15970 * 179.67930 * 22 21 20 24 24 H 1.07998 * 119.99837 * 157.96684 * 23 22 21 25 25 C 1.39903 * 120.00188 * 337.96142 * 23 22 21 26 26 N 1.30875 * 120.00058 * 327.60476 * 25 23 22 27 27 Si 1.86800 * 120.00161 * 147.60521 * 25 23 22 28 28 H 1.48496 * 109.47215 * 94.98864 * 27 25 23 29 29 H 1.48501 * 109.47190 * 214.98510 * 27 25 23 30 30 H 1.48505 * 109.47104 * 334.98618 * 27 25 23 31 31 C 1.40863 * 119.67211 * 359.69769 * 22 21 20 32 32 C 1.36377 * 119.83306 * 0.02562 * 31 22 21 33 33 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46951 * 299.99765 * 1 2 3 35 35 H 1.08998 * 109.47119 * 60.00242 * 1 2 3 36 36 H 1.07993 * 120.14009 * 31.44518 * 5 4 2 37 37 H 1.07993 * 120.34459 * 178.68322 * 6 5 4 38 38 H 1.08000 * 120.18445 * 1.88783 * 8 7 6 39 39 H 1.08001 * 119.88683 * 180.29583 * 9 8 7 40 40 H 1.08004 * 119.81285 * 179.31526 * 10 9 8 41 41 H 1.08002 * 120.02867 * 180.31086 * 11 10 9 42 42 H 1.09006 * 109.47041 * 185.50972 * 15 13 4 43 43 H 1.08997 * 109.47401 * 305.51125 * 15 13 4 44 44 H 0.96998 * 119.99832 * 356.70105 * 18 16 15 45 45 H 1.07994 * 119.91644 * 359.97438 * 20 19 18 46 46 H 1.07995 * 120.08486 * 180.25318 * 21 20 19 47 47 H 0.97003 * 119.99864 * 179.97438 * 26 25 23 48 48 H 1.08001 * 120.08369 * 179.97438 * 31 22 21 49 49 H 1.07995 * 119.91863 * 179.97438 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4882 -2.3715 -0.0005 6 6 2.0174 -3.4409 0.6050 7 6 3.3453 -3.3288 1.2384 8 6 3.8068 -4.3173 2.1073 9 6 5.0387 -4.1730 2.7127 10 6 5.8075 -3.0485 2.4685 11 6 5.3582 -2.0680 1.6004 12 6 4.1366 -2.2071 0.9793 13 6 3.6481 -1.1697 0.0000 14 1 4.0145 -0.1869 0.2967 15 6 4.1602 -1.5079 -1.4015 16 6 3.7756 -0.4069 -2.3559 17 8 3.1537 0.5539 -1.9547 18 7 4.1238 -0.4895 -3.6554 19 6 3.7098 0.4931 -4.5508 20 6 3.3424 0.1387 -5.8489 21 6 2.9304 1.0949 -6.7298 22 6 2.8880 2.4448 -6.3294 23 6 2.4691 3.4410 -7.2374 24 1 2.0966 4.3854 -6.8689 25 6 2.5367 3.2051 -8.6148 26 7 3.4861 2.4483 -9.1033 27 14 1.2717 3.9704 -9.7566 28 1 1.8064 5.2419 -10.3066 29 1 0.9796 3.0332 -10.8709 30 1 0.0236 4.2444 -9.0000 31 6 3.2659 2.7956 -5.0185 32 6 3.6703 1.8277 -4.1471 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8900 36 1 0.5270 -2.4442 -0.4874 37 1 1.4783 -4.3763 0.6295 38 1 3.2056 -5.1932 2.3017 39 1 5.4022 -4.9382 3.3825 40 1 6.7656 -2.9372 2.9544 41 1 5.9651 -1.1952 1.4101 42 1 5.2456 -1.6057 -1.3780 43 1 3.7178 -2.4472 -1.7331 44 1 4.6627 -1.2334 -3.9668 45 1 3.3805 -0.8960 -6.1559 46 1 2.6424 0.8185 -7.7333 47 1 3.5327 2.2845 -10.0582 48 1 3.2363 3.8286 -4.7046 49 1 3.9608 2.0951 -3.1419 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016495912.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:51 Heat of formation + Delta-G solvation = 5.308942 kcal Electronic energy + Delta-G solvation = -33655.500893 eV Core-core repulsion = 29319.566251 eV Total energy + Delta-G solvation = -4335.934642 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.20882 -39.33776 -38.97211 -37.20446 -36.50621 -34.40690 -33.50470 -32.96585 -32.38860 -30.47916 -29.61653 -29.47367 -29.24397 -28.29969 -25.29780 -24.11954 -23.35699 -22.26322 -21.52385 -21.01423 -20.65580 -19.56378 -18.14081 -17.69042 -17.33525 -17.18316 -16.62796 -16.19383 -15.77762 -15.59520 -15.21339 -15.01362 -14.71257 -14.55579 -14.15149 -13.99569 -13.75164 -13.47008 -13.29575 -13.21859 -13.07419 -12.78507 -12.60275 -12.45970 -12.25569 -12.07834 -11.98742 -11.93828 -11.73065 -11.54960 -11.29841 -11.14366 -11.07746 -10.92096 -10.84933 -10.50880 -10.10649 -9.71423 -9.68488 -9.41668 -9.32412 -9.11002 -8.89711 -8.61721 -7.77836 -7.51129 -7.10823 -6.85455 -4.24380 0.66372 1.10788 2.09325 2.62887 2.77913 2.97846 3.02870 3.05692 3.13424 3.14732 3.41739 3.56844 3.81726 3.90594 4.40250 4.44820 4.52506 4.60440 4.66701 4.79254 4.83495 5.03812 5.08305 5.12578 5.17662 5.23034 5.31469 5.41052 5.49835 5.60832 5.63835 5.70590 5.73313 5.78142 5.87319 5.99073 6.21228 6.25835 6.27234 6.33417 6.48888 6.63907 6.72769 6.82560 7.00701 7.03111 7.19074 7.33590 7.41857 7.60396 7.74287 7.94510 8.05670 8.25797 8.29621 8.35719 8.58401 8.86442 8.87465 9.06025 10.04323 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002039 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.077888 B =13730.359923 C =14316.477805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.475 6.475 4 N -0.556 5.556 5 C 0.103 3.897 6 C -0.192 4.192 7 C -0.028 4.028 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.125 4.125 11 C -0.101 4.101 12 C -0.099 4.099 13 C 0.201 3.799 14 H 0.118 0.882 15 C -0.148 4.148 16 C 0.487 3.513 17 O -0.503 6.503 18 N -0.653 5.653 19 C -0.017 4.017 20 C -0.104 4.104 21 C -0.172 4.172 22 C 0.112 3.888 23 C -0.466 4.466 24 H 0.081 0.919 25 C 0.088 3.912 26 N -0.771 5.771 27 Si 0.895 3.105 28 H -0.270 1.270 29 H -0.274 1.274 30 H -0.258 1.258 31 C -0.223 4.223 32 C -0.064 4.064 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.391 0.609 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.282 0.718 48 H 0.093 0.907 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -16.398 18.301 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.303 3.697 3 O -0.344 6.344 4 N -0.280 5.280 5 C -0.012 4.012 6 C -0.215 4.215 7 C -0.029 4.029 8 C -0.132 4.132 9 C -0.134 4.134 10 C -0.144 4.144 11 C -0.119 4.119 12 C -0.101 4.101 13 C 0.097 3.903 14 H 0.135 0.865 15 C -0.190 4.190 16 C 0.273 3.727 17 O -0.377 6.377 18 N -0.297 5.297 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.192 4.192 22 C 0.109 3.891 23 C -0.494 4.494 24 H 0.099 0.901 25 C -0.133 4.133 26 N -0.394 5.394 27 Si 0.718 3.282 28 H -0.195 1.195 29 H -0.199 1.199 30 H -0.181 1.181 31 C -0.243 4.243 32 C -0.083 4.083 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.224 0.776 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.513 -15.053 18.371 23.756 hybrid contribution -0.145 -0.438 -0.981 1.084 sum -0.658 -15.491 17.390 23.299 Atomic orbital electron populations 1.21977 0.91616 1.04203 1.05517 1.20775 0.90388 0.82838 0.75733 1.90779 1.69950 1.30118 1.43602 1.45654 1.06233 1.05571 1.70519 1.21764 0.97706 0.85456 0.96253 1.21676 0.96643 0.99681 1.03513 1.18674 0.93920 0.93441 0.96822 1.21145 0.96289 0.98531 0.97266 1.21105 0.94652 0.97838 0.99808 1.21155 1.00117 0.94364 0.98725 1.20863 0.95212 0.99361 0.96492 1.20097 0.95395 0.95008 0.99562 1.19659 0.79164 0.99323 0.92107 0.86459 1.22081 1.03198 0.99286 0.94409 1.20472 0.80957 0.88226 0.83079 1.90895 1.38660 1.32147 1.76041 1.42967 1.52708 1.26301 1.07737 1.17043 1.15861 0.87677 0.90316 1.20167 1.01664 0.97486 0.93134 1.20606 1.07306 0.92490 0.98777 1.17586 0.87639 0.92375 0.91461 1.19491 1.37907 1.01820 0.90190 0.90078 1.25934 0.94241 0.93772 0.99390 1.69955 1.24966 1.29296 1.15147 0.86524 0.82513 0.79629 0.79490 1.19476 1.19915 1.18118 1.20608 1.10842 0.97198 0.95671 1.20315 0.98773 0.91141 0.98115 0.90542 0.88845 0.88324 0.83185 0.84545 0.85785 0.86067 0.85966 0.85624 0.88102 0.88935 0.77612 0.89478 0.87580 0.90671 0.88858 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.08 36.01 0.36 -1.50 16 2 C 0.51 7.77 6.56 -10.99 -0.07 7.69 16 3 O -0.47 -9.41 13.91 -18.76 -0.26 -9.67 16 4 N -0.56 -7.15 2.37 -109.68 -0.26 -7.41 16 5 C 0.10 0.99 9.01 -15.89 -0.14 0.84 16 6 C -0.19 -1.66 9.98 -37.34 -0.37 -2.04 16 7 C -0.03 -0.28 5.84 -105.10 -0.61 -0.89 16 8 C -0.11 -0.96 9.82 -39.20 -0.39 -1.35 16 9 C -0.12 -0.92 10.03 -39.61 -0.40 -1.31 16 10 C -0.13 -1.05 10.04 -39.45 -0.40 -1.45 16 11 C -0.10 -0.99 9.74 -39.68 -0.39 -1.38 16 12 C -0.10 -1.10 5.07 -104.22 -0.53 -1.63 16 13 C 0.20 2.60 2.10 -68.92 -0.14 2.46 16 14 H 0.12 1.81 6.89 -51.93 -0.36 1.45 16 15 C -0.15 -1.86 5.27 -27.89 -0.15 -2.00 16 16 C 0.49 8.48 7.51 -10.98 -0.08 8.40 16 17 O -0.50 -10.74 9.28 -18.75 -0.17 -10.91 16 18 N -0.65 -11.74 5.30 -9.74 -0.05 -11.79 16 19 C -0.02 -0.39 6.25 -83.57 -0.52 -0.91 16 20 C -0.10 -2.43 9.90 -39.78 -0.39 -2.82 16 21 C -0.17 -4.47 8.74 -39.25 -0.34 -4.81 16 22 C 0.11 3.06 5.57 -106.80 -0.60 2.47 16 23 C -0.47 -12.55 8.94 -37.86 -0.34 -12.89 16 24 H 0.08 2.13 8.02 -52.49 -0.42 1.71 16 25 C 0.09 2.21 4.77 -17.34 -0.08 2.12 16 26 N -0.77 -19.70 11.78 55.55 0.65 -19.05 16 27 Si 0.90 18.45 29.66 -169.99 -5.04 13.41 16 28 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 29 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 30 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 31 C -0.22 -5.88 9.74 -39.26 -0.38 -6.26 16 32 C -0.06 -1.58 8.59 -39.79 -0.34 -1.93 16 33 H 0.08 0.58 5.59 -51.93 -0.29 0.29 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.15 1.06 6.49 -52.49 -0.34 0.72 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.04 7.97 -51.93 -0.41 0.63 16 44 H 0.39 5.65 8.82 -40.82 -0.36 5.29 16 45 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 46 H 0.11 2.79 6.52 -52.49 -0.34 2.44 16 47 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 48 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 49 H 0.10 2.59 6.45 -52.49 -0.34 2.25 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -33.95 403.07 -11.59 -45.54 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -6.23 Total: 13.00 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -6.31 Total: -19.18 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.34 Total: -38.25 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.44 Total: -20.59 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.04 Total: 13.41 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.95 -11.59 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016495912.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.850 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds