Wall clock time and date at job start Tue Mar 31 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21295 * 120.00076 * 2 1 4 4 N 1.34771 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.39846 * 120.00407 * 184.33748 * 4 2 1 6 6 C 1.38998 * 119.93774 * 33.75327 * 5 4 2 7 7 C 1.37827 * 120.06929 * 180.02562 * 6 5 4 8 8 C 1.39551 * 119.93257 * 359.97438 * 7 6 5 9 9 C 1.48077 * 120.06093 * 180.02562 * 8 7 6 10 10 C 1.43197 * 119.99988 * 292.98081 * 9 8 7 11 11 N 7.73602 * 172.52392 * 316.48892 * 2 1 3 12 12 C 1.36186 * 119.99695 * 112.98639 * 9 8 7 13 13 C 1.46702 * 120.00166 * 352.88165 * 12 9 8 14 14 C 1.40106 * 120.10772 * 325.05256 * 13 12 9 15 15 C 1.37105 * 119.89368 * 179.97438 * 14 13 12 16 16 C 1.39229 * 120.10834 * 359.97438 * 15 14 13 17 17 N 1.39231 * 119.89343 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.46502 * 119.99770 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.47236 * 89.99975 * 19 17 16 21 21 H 1.07999 * 119.99757 * 0.02562 * 20 19 17 22 22 C 1.37871 * 119.99654 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00235 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99685 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46893 * 60.00576 * 24 22 20 26 26 H 1.48501 * 109.47273 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47092 * 300.00318 * 24 22 20 28 28 C 1.39218 * 120.20728 * 0.02562 * 16 15 14 29 29 C 1.37109 * 120.11323 * 0.02562 * 28 16 15 30 30 C 1.39538 * 119.87155 * 0.27685 * 8 7 6 31 31 C 1.37836 * 119.93257 * 359.44756 * 30 8 7 32 32 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47282 * 299.99936 * 1 2 3 34 34 H 1.09004 * 109.46856 * 59.99772 * 1 2 3 35 35 H 0.97005 * 120.00034 * 4.33666 * 4 2 1 36 36 H 1.08007 * 119.95980 * 0.02562 * 6 5 4 37 37 H 1.08002 * 120.03424 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.99603 * 172.88515 * 12 9 8 39 39 H 1.08005 * 120.05211 * 0.25122 * 14 13 12 40 40 H 1.07998 * 119.95044 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47535 * 89.99413 * 18 17 16 42 42 H 1.08999 * 109.47250 * 210.00147 * 18 17 16 43 43 H 1.09009 * 109.47040 * 329.99374 * 18 17 16 44 44 H 1.09004 * 109.46912 * 210.00403 * 19 17 16 45 45 H 1.08998 * 109.46870 * 329.99498 * 19 17 16 46 46 H 0.97006 * 119.99887 * 179.97438 * 23 22 20 47 47 H 1.08003 * 119.93950 * 180.02562 * 28 16 15 48 48 H 1.08001 * 120.05743 * 179.97438 * 29 28 16 49 49 H 1.07993 * 120.03649 * 179.71934 * 30 8 7 50 50 H 1.07997 * 119.97106 * 180.27167 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5764 -1.1688 0.0921 6 6 4.2235 -0.1939 0.8423 7 6 5.5987 -0.1927 0.9340 8 6 6.3415 -1.1720 0.2731 9 6 7.8191 -1.1738 0.3702 10 6 8.5768 -0.1130 -0.2225 11 7 9.1772 0.7300 -0.6930 12 6 8.4573 -2.1843 1.0229 13 6 7.6810 -3.1855 1.7625 14 6 6.5054 -2.8126 2.4273 15 6 5.7829 -3.7521 3.1167 16 6 6.2154 -5.0749 3.1564 17 7 5.4786 -6.0251 3.8583 18 6 4.2500 -5.6325 4.5531 19 6 5.9319 -7.4176 3.9020 20 6 6.8400 -7.6133 5.0886 21 1 7.0574 -6.7835 5.7448 22 6 7.3923 -8.8518 5.3370 23 7 7.1272 -9.8623 4.5382 24 14 8.5174 -9.0946 6.8083 25 1 7.7772 -8.7753 8.0555 26 1 8.9770 -10.5060 6.8526 27 1 9.6929 -8.1953 6.6863 28 6 7.3829 -5.4502 2.4973 29 6 8.1127 -4.5177 1.8061 30 6 5.6894 -2.1463 -0.4836 31 6 4.3136 -2.1458 -0.5669 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.6980 -2.0061 -0.0626 36 1 3.6480 0.5634 1.3539 37 1 6.1010 0.5653 1.5167 38 1 9.5351 -2.2485 0.9962 39 1 6.1665 -1.7877 2.3931 40 1 4.8764 -3.4657 3.6292 41 1 3.4009 -5.7389 3.8780 42 1 4.1046 -6.2723 5.4235 43 1 4.3306 -4.5942 4.8749 44 1 5.0692 -8.0778 3.9918 45 1 6.4748 -7.6518 2.9863 46 1 7.5162 -10.7336 4.7128 47 1 7.7142 -6.4776 2.5306 48 1 9.0185 -4.8098 1.2955 49 1 6.2618 -2.9027 -0.9998 50 1 3.8080 -2.9022 -1.1488 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017023403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:08 Heat of formation + Delta-G solvation = 73.760119 kcal Electronic energy + Delta-G solvation = -32719.910432 eV Core-core repulsion = 28484.662718 eV Total energy + Delta-G solvation = -4235.247714 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.76843 -39.56126 -38.60616 -36.94534 -36.03061 -35.08093 -33.50455 -32.72273 -31.09436 -30.92683 -30.64308 -29.35416 -28.05761 -27.78423 -25.42979 -23.93708 -23.05112 -22.59659 -21.85970 -21.41162 -20.61713 -19.71306 -18.08852 -17.70648 -17.19191 -16.85810 -16.59993 -15.86581 -15.58342 -15.13135 -14.82865 -14.69305 -14.60564 -14.26425 -14.00000 -13.90657 -13.78323 -13.57132 -13.40776 -13.38816 -13.14561 -12.98410 -12.87863 -12.83588 -12.75749 -12.38852 -12.25129 -12.14388 -11.60422 -11.57852 -11.44828 -11.32962 -11.19081 -11.06031 -10.79803 -10.50804 -10.44057 -10.12751 -10.11044 -10.00120 -9.56497 -8.97768 -8.71779 -8.61046 -8.51449 -8.01654 -6.56246 -6.13644 -4.29237 0.73868 1.14145 1.37655 2.02343 2.25640 2.33897 2.73204 2.80256 3.21216 3.26433 3.29204 3.41881 3.67491 3.94759 4.10545 4.30913 4.35460 4.41019 4.70489 4.72064 4.85456 4.92029 4.96413 5.11095 5.18353 5.27681 5.31258 5.34299 5.42008 5.44116 5.49601 5.62068 5.79666 5.83330 5.89334 5.96766 5.98325 6.09403 6.18047 6.22559 6.23952 6.33796 6.39252 6.47163 6.51519 6.78526 6.87555 6.89965 7.00610 7.06455 7.07735 7.19462 7.38111 7.58967 7.68974 7.77938 7.99987 8.06121 8.26351 8.78624 9.38242 10.84605 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.002423 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.397692 B =11553.579624 C =13870.530878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.528 6.528 4 N -0.673 5.673 5 C 0.142 3.858 6 C -0.118 4.118 7 C -0.095 4.095 8 C -0.032 4.032 9 C -0.085 4.085 10 C 0.266 3.734 11 N -0.443 5.443 12 C 0.039 3.961 13 C -0.185 4.185 14 C -0.031 4.031 15 C -0.229 4.229 16 C 0.263 3.737 17 N -0.603 5.603 18 C 0.093 3.907 19 C 0.246 3.754 20 C -0.535 4.535 21 H 0.060 0.940 22 C 0.064 3.936 23 N -0.894 5.894 24 Si 0.897 3.103 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.275 1.275 28 C -0.197 4.197 29 C -0.037 4.037 30 C -0.070 4.070 31 C -0.138 4.138 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.411 0.589 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.039 0.961 46 H 0.266 0.734 47 H 0.136 0.864 48 H 0.118 0.882 49 H 0.130 0.870 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.174 13.146 -8.559 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.403 6.403 4 N -0.318 5.318 5 C 0.048 3.952 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.034 4.034 9 C -0.089 4.089 10 C -0.048 4.048 11 N -0.120 5.120 12 C 0.017 3.983 13 C -0.188 4.188 14 C -0.050 4.050 15 C -0.252 4.252 16 C 0.153 3.847 17 N -0.305 5.305 18 C -0.051 4.051 19 C 0.126 3.874 20 C -0.574 4.574 21 H 0.078 0.922 22 C -0.139 4.139 23 N -0.532 5.532 24 Si 0.724 3.276 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.219 4.219 29 C -0.057 4.057 30 C -0.088 4.088 31 C -0.159 4.159 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.248 0.752 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.153 0.847 48 H 0.136 0.864 49 H 0.148 0.852 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.039 14.817 -9.164 20.108 hybrid contribution 0.104 -1.146 1.094 1.588 sum -9.935 13.671 -8.070 18.728 Atomic orbital electron populations 1.21859 0.90825 1.04620 1.05663 1.21009 0.90872 0.83223 0.75202 1.90763 1.70468 1.31235 1.47845 1.43690 1.05413 1.09834 1.72884 1.17774 0.82402 0.97596 0.97412 1.20957 0.94386 0.99406 0.99037 1.21136 0.93201 0.98007 0.99039 1.18275 0.90210 0.96267 0.98658 1.16466 0.90629 0.94722 1.07122 1.25849 0.92946 0.93053 0.92921 1.81251 1.09461 1.10696 1.10549 1.22421 0.98811 0.89374 0.87720 1.18292 0.99108 0.93324 1.08076 1.21101 0.91836 0.98837 0.93241 1.20384 1.03780 0.92037 1.08959 1.18199 0.89938 0.88530 0.88043 1.47210 1.23355 1.09519 1.50372 1.21564 0.86346 1.00348 0.96816 1.19381 0.95398 0.74865 0.97754 1.21483 1.28936 0.95667 1.11322 0.92225 1.24948 0.96472 0.95723 0.96765 1.69911 1.44275 1.01440 1.37576 0.86569 0.81067 0.77196 0.82725 1.20207 1.21143 1.20013 1.20709 0.96588 1.01241 1.03402 1.20854 0.97745 0.91564 0.95496 1.20971 0.93315 0.97400 0.97137 1.20771 0.94017 1.00048 1.01020 0.90250 0.88303 0.88459 0.75235 0.84952 0.85633 0.85418 0.85978 0.86676 0.94209 0.91154 0.92353 0.94978 0.94331 0.92459 0.84659 0.86433 0.85186 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.39 36.00 0.37 -0.34 16 2 C 0.51 4.41 7.69 -10.99 -0.08 4.32 16 3 O -0.53 -6.93 14.76 5.54 0.08 -6.85 16 4 N -0.67 -5.20 5.33 -9.82 -0.05 -5.25 16 5 C 0.14 1.47 6.28 -83.64 -0.53 0.94 16 6 C -0.12 -1.36 8.64 -39.45 -0.34 -1.70 16 7 C -0.10 -1.08 8.03 -39.24 -0.32 -1.39 16 8 C -0.03 -0.37 2.90 -104.89 -0.30 -0.67 16 9 C -0.09 -0.96 5.20 -104.67 -0.54 -1.51 16 10 C 0.27 3.46 15.34 -22.44 -0.34 3.11 16 11 N -0.44 -6.69 18.54 41.87 0.78 -5.92 16 12 C 0.04 0.43 9.50 -36.90 -0.35 0.08 16 13 C -0.19 -2.40 5.16 -105.08 -0.54 -2.94 16 14 C -0.03 -0.42 7.86 -39.29 -0.31 -0.73 16 15 C -0.23 -3.42 9.16 -39.62 -0.36 -3.78 16 16 C 0.26 4.62 6.56 -83.77 -0.55 4.07 16 17 N -0.60 -11.43 2.98 -180.94 -0.54 -11.96 16 18 C 0.09 1.43 10.18 59.85 0.61 2.04 16 19 C 0.25 5.62 4.90 -5.19 -0.03 5.59 16 20 C -0.54 -13.62 9.39 -34.44 -0.32 -13.94 16 21 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 24 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C -0.20 -3.43 9.16 -39.63 -0.36 -3.80 16 29 C -0.04 -0.53 9.77 -39.29 -0.38 -0.91 16 30 C -0.07 -0.74 8.74 -39.24 -0.34 -1.09 16 31 C -0.14 -1.36 9.95 -39.44 -0.39 -1.75 16 32 H 0.08 0.14 7.92 -51.93 -0.41 -0.27 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.41 1.85 8.66 -40.82 -0.35 1.50 16 36 H 0.13 1.61 6.40 -52.48 -0.34 1.28 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.51 4.80 -52.48 -0.25 1.25 16 40 H 0.12 1.58 6.11 -52.49 -0.32 1.26 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 43 H 0.06 0.79 6.17 -51.92 -0.32 0.47 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.04 0.93 6.17 -51.93 -0.32 0.61 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 47 H 0.14 2.65 6.11 -52.48 -0.32 2.33 16 48 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 49 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 50 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 425.31 15.07 6.41 6.41 Total: -1.00 -31.58 425.31 -9.53 -41.11 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.40 Total: 3.55 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -5.52 Total: -12.83 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.92 Total: -46.67 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.08 Total: -6.85 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -31.58 -9.53 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017023403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.866 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds