Wall clock time and date at job start Tue Mar 31 2020 05:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21295 * 120.00076 * 2 1 4 4 N 1.34771 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.39846 * 120.00407 * 184.33748 * 4 2 1 6 6 C 1.38998 * 119.93774 * 33.75327 * 5 4 2 7 7 C 1.37827 * 120.06929 * 180.02562 * 6 5 4 8 8 C 1.39551 * 119.93257 * 359.97438 * 7 6 5 9 9 C 1.48077 * 120.06093 * 180.02562 * 8 7 6 10 10 C 1.43197 * 119.99988 * 292.98081 * 9 8 7 11 11 N 7.73602 * 172.52392 * 316.48892 * 2 1 3 12 12 C 1.36186 * 119.99695 * 112.98639 * 9 8 7 13 13 C 1.46702 * 120.00166 * 352.88165 * 12 9 8 14 14 C 1.40106 * 120.10772 * 325.05256 * 13 12 9 15 15 C 1.37105 * 119.89368 * 179.97438 * 14 13 12 16 16 C 1.39229 * 120.10834 * 359.97438 * 15 14 13 17 17 N 1.39231 * 119.89343 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.46502 * 119.99770 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.47236 * 89.99975 * 19 17 16 21 21 H 1.07999 * 119.99757 * 0.02562 * 20 19 17 22 22 C 1.37871 * 119.99654 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00235 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99685 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46893 * 60.00576 * 24 22 20 26 26 H 1.48501 * 109.47273 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47092 * 300.00318 * 24 22 20 28 28 C 1.39218 * 120.20728 * 0.02562 * 16 15 14 29 29 C 1.37109 * 120.11323 * 0.02562 * 28 16 15 30 30 C 1.39538 * 119.87155 * 0.27685 * 8 7 6 31 31 C 1.37836 * 119.93257 * 359.44756 * 30 8 7 32 32 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47282 * 299.99936 * 1 2 3 34 34 H 1.09004 * 109.46856 * 59.99772 * 1 2 3 35 35 H 0.97005 * 120.00034 * 4.33666 * 4 2 1 36 36 H 1.08007 * 119.95980 * 0.02562 * 6 5 4 37 37 H 1.08002 * 120.03424 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.99603 * 172.88515 * 12 9 8 39 39 H 1.08005 * 120.05211 * 0.25122 * 14 13 12 40 40 H 1.07998 * 119.95044 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47535 * 89.99413 * 18 17 16 42 42 H 1.08999 * 109.47250 * 210.00147 * 18 17 16 43 43 H 1.09009 * 109.47040 * 329.99374 * 18 17 16 44 44 H 1.09004 * 109.46912 * 210.00403 * 19 17 16 45 45 H 1.08998 * 109.46870 * 329.99498 * 19 17 16 46 46 H 0.97006 * 119.99887 * 179.97438 * 23 22 20 47 47 H 1.08003 * 119.93950 * 180.02562 * 28 16 15 48 48 H 1.08001 * 120.05743 * 179.97438 * 29 28 16 49 49 H 1.07993 * 120.03649 * 179.71934 * 30 8 7 50 50 H 1.07997 * 119.97106 * 180.27167 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5764 -1.1688 0.0921 6 6 4.2235 -0.1939 0.8423 7 6 5.5987 -0.1927 0.9340 8 6 6.3415 -1.1720 0.2731 9 6 7.8191 -1.1738 0.3702 10 6 8.5768 -0.1130 -0.2225 11 7 9.1772 0.7300 -0.6930 12 6 8.4573 -2.1843 1.0229 13 6 7.6810 -3.1855 1.7625 14 6 6.5054 -2.8126 2.4273 15 6 5.7829 -3.7521 3.1167 16 6 6.2154 -5.0749 3.1564 17 7 5.4786 -6.0251 3.8583 18 6 4.2500 -5.6325 4.5531 19 6 5.9319 -7.4176 3.9020 20 6 6.8400 -7.6133 5.0886 21 1 7.0574 -6.7835 5.7448 22 6 7.3923 -8.8518 5.3370 23 7 7.1272 -9.8623 4.5382 24 14 8.5174 -9.0946 6.8083 25 1 7.7772 -8.7753 8.0555 26 1 8.9770 -10.5060 6.8526 27 1 9.6929 -8.1953 6.6863 28 6 7.3829 -5.4502 2.4973 29 6 8.1127 -4.5177 1.8061 30 6 5.6894 -2.1463 -0.4836 31 6 4.3136 -2.1458 -0.5669 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.6980 -2.0061 -0.0626 36 1 3.6480 0.5634 1.3539 37 1 6.1010 0.5653 1.5167 38 1 9.5351 -2.2485 0.9962 39 1 6.1665 -1.7877 2.3931 40 1 4.8764 -3.4657 3.6292 41 1 3.4009 -5.7389 3.8780 42 1 4.1046 -6.2723 5.4235 43 1 4.3306 -4.5942 4.8749 44 1 5.0692 -8.0778 3.9918 45 1 6.4748 -7.6518 2.9863 46 1 7.5162 -10.7336 4.7128 47 1 7.7142 -6.4776 2.5306 48 1 9.0185 -4.8098 1.2955 49 1 6.2618 -2.9027 -0.9998 50 1 3.8080 -2.9022 -1.1488 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017023403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:06 Heat of formation + Delta-G solvation = 58.334036 kcal Electronic energy + Delta-G solvation = -32720.579357 eV Core-core repulsion = 28484.662718 eV Total energy + Delta-G solvation = -4235.916639 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.53193 -40.62164 -39.61238 -37.98094 -37.29256 -35.98771 -34.88176 -34.21388 -32.05815 -31.84704 -31.49857 -30.36001 -29.63012 -28.68047 -26.80324 -25.30192 -24.03276 -23.51004 -23.02772 -22.60613 -21.37481 -20.92953 -18.86582 -18.60749 -18.54513 -18.12046 -17.85642 -16.95518 -16.56783 -16.38086 -16.19777 -15.62136 -15.47583 -15.36173 -15.27327 -15.05585 -14.73366 -14.58311 -14.46841 -14.26498 -14.18086 -14.15476 -14.01387 -13.83498 -13.64354 -13.31328 -13.26421 -13.14666 -13.02725 -12.97457 -12.66379 -12.58231 -12.50476 -12.29268 -12.21692 -12.08716 -11.77094 -11.48887 -11.25317 -10.91542 -10.86940 -10.59865 -9.89162 -9.80563 -9.68443 -8.89142 -8.29807 -7.70189 -6.33836 -0.23684 0.27035 0.53796 0.82969 1.18173 1.41005 1.42134 1.49902 1.58822 1.72061 2.18823 2.36149 2.40796 2.62924 2.80461 3.09234 3.10245 3.25147 3.82147 3.83314 4.08361 4.09717 4.10943 4.24843 4.28082 4.43332 4.47984 4.48599 4.64078 4.64803 4.66355 4.69396 4.73019 4.77510 4.88162 4.95840 5.03153 5.08421 5.10061 5.16424 5.19116 5.29868 5.37198 5.41290 5.42175 5.57500 5.62525 5.65191 5.72943 5.75050 5.90408 6.08959 6.09525 6.17044 6.48723 6.49950 6.55680 6.84069 6.92481 7.16629 7.37843 8.85539 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.002423 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.397692 B =11553.579624 C =13870.530878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.579 6.579 4 N -0.663 5.663 5 C 0.138 3.862 6 C -0.132 4.132 7 C -0.100 4.100 8 C -0.047 4.047 9 C -0.071 4.071 10 C 0.284 3.716 11 N -0.480 5.480 12 C 0.047 3.953 13 C -0.167 4.167 14 C -0.029 4.029 15 C -0.221 4.221 16 C 0.238 3.762 17 N -0.620 5.620 18 C 0.094 3.906 19 C 0.264 3.736 20 C -0.540 4.540 21 H 0.050 0.950 22 C 0.016 3.984 23 N -0.924 5.924 24 Si 0.956 3.044 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.273 1.273 28 C -0.221 4.221 29 C -0.033 4.033 30 C -0.075 4.075 31 C -0.138 4.138 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.428 0.572 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.011 0.989 45 H 0.018 0.982 46 H 0.267 0.733 47 H 0.102 0.898 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 14.226 -8.883 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.294 3.706 3 O -0.458 6.458 4 N -0.309 5.309 5 C 0.044 3.956 6 C -0.152 4.152 7 C -0.119 4.119 8 C -0.049 4.049 9 C -0.075 4.075 10 C -0.028 4.028 11 N -0.156 5.156 12 C 0.025 3.975 13 C -0.170 4.170 14 C -0.047 4.047 15 C -0.244 4.244 16 C 0.131 3.869 17 N -0.324 5.324 18 C -0.049 4.049 19 C 0.142 3.858 20 C -0.579 4.579 21 H 0.068 0.932 22 C -0.183 4.183 23 N -0.564 5.564 24 Si 0.781 3.219 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.198 1.198 28 C -0.244 4.244 29 C -0.052 4.052 30 C -0.094 4.094 31 C -0.158 4.158 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.268 0.732 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.171 0.829 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.613 15.907 -9.501 21.353 hybrid contribution 0.242 -1.337 1.065 1.727 sum -10.371 14.570 -8.436 19.774 Atomic orbital electron populations 1.21898 0.87118 1.06838 1.06248 1.21861 0.92593 0.82472 0.73687 1.90743 1.71801 1.33020 1.50220 1.43708 1.04547 1.10666 1.72012 1.17943 0.83751 0.97157 0.96775 1.20970 0.94590 0.99790 0.99841 1.21210 0.93254 0.98162 0.99260 1.18324 0.90090 0.96867 0.99572 1.16420 0.90528 0.94044 1.06555 1.25994 0.92118 0.92655 0.92066 1.81279 1.10701 1.11866 1.11789 1.22478 0.99846 0.88288 0.86913 1.18421 0.98605 0.93078 1.06870 1.21304 0.91693 0.99201 0.92515 1.20507 1.04259 0.90896 1.08701 1.18402 0.90326 0.89281 0.88923 1.47004 1.24935 1.08177 1.52324 1.21670 0.85652 1.01066 0.96529 1.18845 0.93768 0.77290 0.95876 1.21723 1.29093 0.95322 1.11765 0.93188 1.25691 0.97855 0.95589 0.99192 1.70012 1.45465 1.01794 1.39139 0.85643 0.79289 0.77142 0.79826 1.19626 1.20718 1.19774 1.20612 0.97799 1.00448 1.05542 1.21037 0.98018 0.91466 0.94674 1.21181 0.93920 0.97367 0.96893 1.21019 0.93850 1.00219 1.00727 0.87258 0.87678 0.87718 0.73226 0.86114 0.85236 0.82912 0.84492 0.85291 0.92371 0.92497 0.90320 0.97083 0.96360 0.92428 0.87951 0.84175 0.84283 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.39 71.24 0.74 -0.21 16 2 C 0.50 8.00 7.69 87.66 0.67 8.67 16 3 O -0.58 -15.11 14.76 -3.08 -0.05 -15.15 16 4 N -0.66 -8.88 5.33 -303.37 -1.62 -10.50 16 5 C 0.14 2.62 6.28 38.23 0.24 2.86 16 6 C -0.13 -2.93 8.64 22.35 0.19 -2.73 16 7 C -0.10 -2.13 8.03 22.49 0.18 -1.95 16 8 C -0.05 -0.96 2.90 -20.04 -0.06 -1.01 16 9 C -0.07 -1.43 5.20 -19.90 -0.10 -1.53 16 10 C 0.28 6.84 15.34 88.32 1.35 8.20 16 11 N -0.48 -13.85 18.54 19.01 0.35 -13.49 16 12 C 0.05 0.88 9.50 24.00 0.23 1.11 16 13 C -0.17 -3.90 5.16 -20.16 -0.10 -4.01 16 14 C -0.03 -0.70 7.86 22.46 0.18 -0.52 16 15 C -0.22 -6.23 9.16 22.24 0.20 -6.03 16 16 C 0.24 8.33 6.56 38.44 0.25 8.58 16 17 N -0.62 -23.91 2.98 -726.37 -2.16 -26.08 16 18 C 0.09 2.84 10.18 127.77 1.30 4.14 16 19 C 0.26 12.61 4.90 85.63 0.42 13.03 16 20 C -0.54 -28.28 9.39 25.60 0.24 -28.04 16 21 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 22 C 0.02 0.87 5.46 84.65 0.46 1.33 16 23 N -0.92 -51.53 13.29 21.45 0.28 -51.25 16 24 Si 0.96 41.99 29.54 68.60 2.03 44.01 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C -0.22 -7.81 9.16 22.24 0.20 -7.61 16 29 C -0.03 -0.89 9.77 22.46 0.22 -0.67 16 30 C -0.08 -1.43 8.74 22.49 0.20 -1.23 16 31 C -0.14 -2.38 9.95 22.36 0.22 -2.16 16 32 H 0.11 -0.02 7.92 -2.39 -0.02 -0.04 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.43 2.62 8.66 -92.70 -0.80 1.82 16 36 H 0.12 2.96 6.40 -2.91 -0.02 2.94 16 37 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.14 3.01 4.80 -2.91 -0.01 3.00 16 40 H 0.13 3.23 6.11 -2.91 -0.02 3.21 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 43 H 0.08 2.01 6.17 -2.38 -0.01 2.00 16 44 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 45 H 0.02 0.94 6.17 -2.39 -0.01 0.93 16 46 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 47 H 0.10 4.27 6.11 -2.91 -0.02 4.25 16 48 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 49 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 50 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -71.06 425.31 6.27 -64.79 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.19 Total: 17.47 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 7.24 Total: -9.80 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.14 Total: -101.32 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.05 Total: -15.15 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -71.06 6.27 -64.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017023403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.120 kcal (2) G-P(sol) polarization free energy of solvation -71.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds