Wall clock time and date at job start Tue Mar 31 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.62264 * 2 1 4 4 C 1.53228 * 109.78473 * 120.47519 * 2 1 3 5 5 C 1.52959 * 109.40530 * 65.17665 * 4 2 1 6 6 C 1.52961 * 109.81657 * 63.59814 * 5 4 2 7 7 C 1.53666 * 109.32552 * 296.27421 * 6 5 4 8 8 H 1.09000 * 109.78500 * 295.19099 * 7 6 5 9 9 C 1.52998 * 109.69042 * 174.47558 * 7 6 5 10 10 C 1.50706 * 109.46892 * 176.19141 * 9 7 6 11 11 H 1.08001 * 119.99831 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99682 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00405 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99696 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47157 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46977 * 120.00168 * 14 12 10 17 17 H 1.48506 * 109.46959 * 240.00008 * 14 12 10 18 18 C 1.51264 * 109.62470 * 239.61306 * 2 1 3 19 19 N 1.28021 * 120.84909 * 111.41674 * 18 2 1 20 20 N 1.40105 * 119.99978 * 5.45324 * 19 18 2 21 21 C 1.39602 * 120.00234 * 185.29812 * 20 19 18 22 22 C 1.38987 * 120.07908 * 354.34430 * 21 20 19 23 23 C 1.38064 * 119.92053 * 180.02562 * 22 21 20 24 24 C 1.38322 * 120.07803 * 0.25838 * 23 22 21 25 25 N 1.48019 * 119.91729 * 179.74101 * 24 23 22 26 26 O 1.21802 * 120.00440 * 0.02562 * 25 24 23 27 27 O 1.21802 * 119.99844 * 179.97438 * 25 24 23 28 28 C 1.38275 * 120.16052 * 359.49325 * 24 23 22 29 29 C 1.38115 * 120.07727 * 0.50341 * 28 24 23 30 30 N 1.48023 * 120.03590 * 179.72686 * 29 28 24 31 31 O 1.21794 * 120.00433 * 353.51442 * 30 29 28 32 32 O 1.21806 * 119.99837 * 173.51489 * 30 29 28 33 33 H 1.09004 * 109.47107 * 180.38589 * 1 2 3 34 34 H 1.09002 * 109.46766 * 300.38440 * 1 2 3 35 35 H 1.08999 * 109.47206 * 60.38017 * 1 2 3 36 36 H 1.08991 * 109.48420 * 185.15733 * 4 2 1 37 37 H 1.09005 * 109.48035 * 305.18743 * 4 2 1 38 38 H 1.08999 * 109.41633 * 183.70280 * 5 4 2 39 39 H 1.09005 * 109.41316 * 303.49674 * 5 4 2 40 40 H 1.09000 * 109.47874 * 56.38132 * 6 5 4 41 41 H 1.09002 * 109.48505 * 176.42199 * 6 5 4 42 42 H 1.09002 * 109.47088 * 296.18748 * 9 7 6 43 43 H 1.08992 * 109.47371 * 56.19120 * 9 7 6 44 44 H 0.97003 * 119.99811 * 179.97438 * 13 12 10 45 45 H 0.97004 * 119.99852 * 5.28920 * 20 19 18 46 46 H 1.08003 * 120.03758 * 0.02562 * 22 21 20 47 47 H 1.07995 * 119.95925 * 179.97438 * 23 22 21 48 48 H 1.07995 * 119.96442 * 180.25486 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0487 -0.7312 1.2426 5 6 1.6508 -2.2063 1.1674 6 6 2.3284 -2.8654 -0.0351 7 6 1.8152 -2.2136 -1.3285 8 1 0.7512 -2.4177 -1.4475 9 6 2.5864 -2.7696 -2.5272 10 6 2.0170 -2.1977 -3.8000 11 1 1.1882 -1.5065 -3.7580 12 6 2.5547 -2.5562 -5.0179 13 7 3.5643 -3.3976 -5.0690 14 14 1.8494 -1.8468 -6.5954 15 1 0.7271 -0.9311 -6.2680 16 1 2.9074 -1.0943 -7.3163 17 1 1.3532 -2.9506 -7.4561 18 6 2.0381 -0.7207 -1.2290 19 7 2.6366 -0.0827 -2.1637 20 7 2.9300 1.2783 -2.0064 21 6 3.4818 2.0005 -3.0660 22 6 3.8498 1.3481 -4.2367 23 6 4.3958 2.0655 -5.2824 24 6 4.5816 3.4310 -5.1639 25 7 5.1725 4.1957 -6.2850 26 8 5.4941 3.6227 -7.3106 27 8 5.3363 5.3983 -6.1824 28 6 4.2119 4.0842 -4.0026 29 6 3.6651 3.3731 -2.9524 30 7 3.2752 4.0723 -1.7074 31 8 3.5436 5.2513 -1.5615 32 8 2.6861 3.4686 -0.8287 33 1 -0.3633 -1.0277 0.0069 34 1 -0.3633 0.5198 0.8865 35 1 -0.3633 0.5079 -0.8934 36 1 3.1347 -0.6495 1.2858 37 1 1.6145 -0.2825 2.1362 38 1 1.9620 -2.7126 2.0811 39 1 0.5688 -2.2847 1.0614 40 1 3.4079 -2.7331 0.0383 41 1 2.0924 -3.9295 -0.0473 42 1 3.6374 -2.4931 -2.4431 43 1 2.4967 -3.8557 -2.5449 44 1 3.9423 -3.6500 -5.9259 45 1 2.7495 1.7187 -1.1612 46 1 3.7089 0.2812 -4.3283 47 1 4.6823 1.5591 -6.1922 48 1 4.3546 5.1511 -3.9150 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017111967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:33 Heat of formation + Delta-G solvation = 55.905087 kcal Electronic energy + Delta-G solvation = -35857.899169 eV Core-core repulsion = 31113.309278 eV Total energy + Delta-G solvation = -4744.589892 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.66709 -42.16220 -40.06574 -39.37398 -37.18960 -36.61194 -36.20218 -34.13120 -33.27622 -32.31182 -32.12268 -30.56086 -29.02409 -27.02458 -26.91500 -25.95161 -25.19378 -23.43518 -22.92526 -22.64396 -21.40088 -20.48115 -20.21210 -19.25454 -18.79520 -18.43501 -18.09580 -17.91336 -17.74419 -17.56176 -16.55274 -16.31800 -15.45494 -15.10597 -14.81002 -14.56620 -14.45748 -14.26293 -13.86365 -13.59878 -13.26024 -13.01380 -12.60148 -12.55820 -12.48027 -12.38164 -11.92491 -11.88662 -11.62425 -11.62125 -11.52158 -11.51290 -11.27242 -11.24217 -11.18964 -11.14760 -10.97046 -10.71943 -10.62084 -10.55826 -10.23264 -10.18194 -10.03930 -9.79313 -9.17945 -9.08632 -8.46572 -8.07693 -6.09878 -4.08114 -0.43788 -0.27801 0.88019 0.96172 1.17249 1.40112 2.27818 2.36207 2.94307 3.17744 3.29606 3.31269 3.80290 4.12888 4.18611 4.28528 4.34189 4.47734 4.53771 4.65065 4.84508 4.96652 5.07354 5.17638 5.26471 5.30265 5.35023 5.38854 5.51834 5.55292 5.66199 5.67215 5.73653 5.87452 5.89527 5.94706 6.01245 6.12772 6.16645 6.21010 6.26200 6.34598 6.43803 6.60161 6.61677 6.76078 7.32758 7.49932 7.58522 7.60294 7.86680 8.23766 8.28953 8.93576 9.52151 11.01513 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.004195 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.159721 B = 6673.260663 C = 9852.075913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.106 4.106 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.028 4.028 8 H 0.088 0.912 9 C 0.030 3.970 10 C -0.490 4.490 11 H 0.052 0.948 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.871 3.129 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.284 1.284 18 C 0.148 3.852 19 N -0.214 5.214 20 N -0.558 5.558 21 C 0.345 3.655 22 C -0.149 4.149 23 C 0.016 3.984 24 C -0.104 4.104 25 N 0.042 4.958 26 O -0.158 6.158 27 O -0.169 6.169 28 C 0.053 3.947 29 C -0.137 4.137 30 N 0.056 4.944 31 O -0.139 6.139 32 O -0.203 6.203 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.259 0.741 45 H 0.403 0.597 46 H 0.195 0.805 47 H 0.169 0.831 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 7.496 10.011 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.162 4.162 6 C -0.151 4.151 7 C -0.049 4.049 8 H 0.106 0.894 9 C -0.007 4.007 10 C -0.529 4.529 11 H 0.070 0.930 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.699 3.301 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.045 4.045 19 N -0.016 5.016 20 N -0.280 5.280 21 C 0.226 3.774 22 C -0.171 4.171 23 C -0.006 4.006 24 C -0.191 4.191 25 N 0.560 4.440 26 O -0.373 6.373 27 O -0.382 6.382 28 C 0.032 3.968 29 C -0.229 4.229 30 N 0.567 4.433 31 O -0.361 6.361 32 O -0.399 6.399 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.069 0.931 45 H 0.257 0.743 46 H 0.212 0.788 47 H 0.186 0.814 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.558 6.555 9.115 11.335 hybrid contribution -0.673 1.296 0.054 1.461 sum -2.231 7.850 9.169 12.275 Atomic orbital electron populations 1.21750 0.92857 1.03037 1.01956 1.20989 0.97792 0.98862 0.94711 0.90938 1.21551 1.00823 0.95978 0.96109 1.21623 1.01159 0.94760 0.98615 1.21768 1.00392 0.99853 0.93076 1.20665 1.01905 0.85011 0.97284 0.89435 1.19130 0.95381 0.96151 0.90017 1.21028 1.15949 1.25352 0.90524 0.92954 1.24872 0.95184 0.95477 0.98544 1.69943 1.24341 1.33965 1.25152 0.86869 0.79341 0.79331 0.84523 1.19994 1.20719 1.20974 1.25698 0.91167 0.98036 0.89615 1.75343 1.15964 0.87190 1.23061 1.47497 1.58145 1.09011 1.13331 1.17554 0.85004 0.86088 0.88710 1.21391 1.01947 1.04078 0.89723 1.21243 0.89199 0.90126 0.99991 1.20488 1.15925 0.92703 0.90000 1.43257 0.98268 1.00996 1.01464 1.94568 1.53298 1.71911 1.17550 1.94536 1.58869 0.96847 1.87929 1.20231 0.86645 1.02400 0.87527 1.20101 1.22647 0.90629 0.89528 1.43165 0.97824 1.00959 1.01330 1.94552 1.57468 0.98781 1.85266 1.94208 1.42591 1.66936 1.36201 0.91139 0.91911 0.92679 0.91929 0.91358 0.91916 0.91374 0.91879 0.90846 0.95852 0.95840 0.93073 0.74268 0.78769 0.81351 0.80497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.90 37.16 0.33 -1.17 16 2 C -0.10 -1.25 2.93 -91.37 -0.27 -1.52 16 3 H 0.07 0.91 5.56 -51.93 -0.29 0.63 16 4 C -0.11 -1.11 5.42 -26.63 -0.14 -1.25 16 5 C -0.12 -1.27 5.65 -26.77 -0.15 -1.42 16 6 C -0.11 -1.46 5.26 -26.41 -0.14 -1.60 16 7 C -0.03 -0.46 2.18 -91.15 -0.20 -0.65 16 8 H 0.09 1.40 7.81 -51.93 -0.41 0.99 16 9 C 0.03 0.65 4.14 -27.88 -0.12 0.54 16 10 C -0.49 -11.75 7.51 -34.44 -0.26 -12.01 16 11 H 0.05 1.27 7.46 -52.49 -0.39 0.88 16 12 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 13 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 14 Si 0.87 19.78 29.54 -169.99 -5.02 14.76 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.15 2.31 5.47 -78.35 -0.43 1.88 16 19 N -0.21 -3.77 7.85 35.88 0.28 -3.48 16 20 N -0.56 -8.76 6.16 32.42 0.20 -8.56 16 21 C 0.35 5.23 6.70 -83.78 -0.56 4.67 16 22 C -0.15 -2.30 9.51 -39.37 -0.37 -2.68 16 23 C 0.02 0.22 9.55 -39.61 -0.38 -0.16 16 24 C -0.10 -1.42 6.85 -79.90 -0.55 -1.97 16 25 N 0.04 0.63 4.45 33.99 0.15 0.78 16 26 O -0.16 -2.47 18.44 -29.46 -0.54 -3.01 16 27 O -0.17 -2.51 18.44 -29.46 -0.54 -3.06 16 28 C 0.05 0.67 9.06 -39.61 -0.36 0.31 16 29 C -0.14 -1.89 6.86 -79.73 -0.55 -2.44 16 30 N 0.06 0.80 4.45 34.07 0.15 0.95 16 31 O -0.14 -1.96 18.47 -29.46 -0.54 -2.50 16 32 O -0.20 -2.98 15.73 -29.46 -0.46 -3.44 16 33 H 0.07 0.73 5.98 -51.93 -0.31 0.42 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.65 6.42 -51.93 -0.33 0.32 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.55 8.08 -51.93 -0.42 0.13 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.40 5.87 2.71 -182.77 -0.49 5.37 16 46 H 0.20 3.52 7.37 -52.48 -0.39 3.13 16 47 H 0.17 2.17 7.60 -52.49 -0.40 1.77 16 48 H 0.18 1.94 7.17 -52.49 -0.38 1.56 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -27.11 399.19 -10.14 -37.24 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.32 Total: 5.77 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -4.24 Total: -18.05 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 1.52 Total: -33.73 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -2.09 Total: -12.01 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -27.11 -10.14 -37.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017111967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.150 kcal (2) G-P(sol) polarization free energy of solvation -27.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds