Wall clock time and date at job start Tue Mar 31 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86791 * 120.00082 * 2 1 4 4 H 1.48495 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47266 * 300.00158 * 3 2 1 6 6 H 1.48502 * 109.47354 * 59.99881 * 3 2 1 7 7 C 1.38632 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99527 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00383 * 0.02562 * 7 2 1 10 10 C 1.35771 * 116.99958 * 174.96122 * 9 7 2 11 11 C 1.38913 * 119.99701 * 185.07210 * 10 9 7 12 12 C 1.37997 * 120.00280 * 179.76359 * 11 10 9 13 13 C 1.38935 * 119.99856 * 0.52139 * 12 11 10 14 14 N 1.39912 * 120.00639 * 179.71965 * 13 12 11 15 15 C 1.34776 * 120.00152 * 215.15469 * 14 13 12 16 16 O 1.21593 * 120.00002 * 355.48237 * 15 14 13 17 17 C 1.47630 * 120.00188 * 175.47670 * 15 14 13 18 18 C 1.40221 * 119.96320 * 359.73259 * 17 15 14 19 19 C 1.36307 * 120.61804 * 179.69749 * 18 17 15 20 20 C 1.39339 * 120.29789 * 0.61099 * 19 18 17 21 21 N 1.37496 * 133.13332 * 179.68174 * 20 19 18 22 22 H 0.97001 * 124.98031 * 359.86917 * 21 20 19 23 23 C 1.36662 * 110.04684 * 179.89067 * 21 20 19 24 24 C 1.34631 * 109.61778 * 0.08257 * 23 21 20 25 25 C 1.41028 * 119.66040 * 359.64030 * 20 19 18 26 26 C 1.39140 * 119.96793 * 180.02562 * 17 15 14 27 27 C 1.50680 * 124.71749 * 179.97438 * 24 23 21 28 28 C 1.53389 * 108.45300 * 343.73385 * 27 24 23 29 29 C 1.53131 * 109.30396 * 49.47076 * 28 27 24 30 30 C 1.51164 * 126.73277 * 180.18487 * 23 21 20 31 31 C 1.38938 * 119.99319 * 359.73540 * 13 12 11 32 32 C 1.38003 * 119.99549 * 0.02562 * 31 13 12 33 33 H 0.97000 * 119.99773 * 0.02562 * 1 2 3 34 34 H 1.08001 * 119.99817 * 0.02562 * 11 10 9 35 35 H 1.08005 * 119.99824 * 180.22974 * 12 11 10 36 36 H 0.97002 * 119.99968 * 35.15233 * 14 13 12 37 37 H 1.08001 * 119.68927 * 0.02562 * 18 17 15 38 38 H 1.08003 * 119.84797 * 180.27048 * 19 18 17 39 39 H 1.08000 * 120.25995 * 0.02562 * 26 17 15 40 40 H 1.09001 * 109.63395 * 103.47721 * 27 24 23 41 41 H 1.08993 * 109.64000 * 224.09085 * 27 24 23 42 42 H 1.09002 * 109.52232 * 289.51037 * 28 27 24 43 43 H 1.08998 * 109.51179 * 169.42590 * 28 27 24 44 44 H 1.09003 * 109.47068 * 169.97558 * 29 28 27 45 45 H 1.09005 * 109.46942 * 49.98346 * 29 28 27 46 46 H 1.08995 * 109.63288 * 282.69031 * 30 23 21 47 47 H 1.08998 * 109.62933 * 43.27697 * 30 23 21 48 48 H 1.08002 * 120.00434 * 179.97438 * 31 13 12 49 49 H 1.08004 * 119.99993 * 179.97438 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0016 10 6 2.0703 -3.5044 -0.1083 11 6 1.4352 -4.7346 -0.2219 12 6 2.1826 -5.8892 -0.3353 13 6 3.5703 -5.8221 -0.3250 14 7 4.3282 -6.9931 -0.4340 15 6 5.4935 -7.1063 0.2336 16 8 5.9269 -6.1616 0.8646 17 6 6.2436 -8.3773 0.1990 18 6 5.7403 -9.4682 -0.5241 19 6 6.4249 -10.6459 -0.5702 20 6 7.6311 -10.7851 0.1134 21 7 8.5182 -11.8263 0.2522 22 1 8.4138 -12.7032 -0.1493 23 6 9.5685 -11.4452 1.0391 24 6 9.3996 -10.1683 1.4311 25 6 8.1460 -9.6975 0.8488 26 6 7.4463 -8.4936 0.8890 27 6 10.3576 -9.4066 2.3100 28 6 11.2934 -10.4115 2.9934 29 6 11.8674 -11.3650 1.9415 30 6 10.7576 -12.2917 1.4322 31 6 4.2054 -4.5921 -0.2060 32 6 3.4577 -3.4373 -0.0975 33 1 -0.4850 0.8401 -0.0004 34 1 0.3565 -4.7872 -0.2257 35 1 1.6887 -6.8453 -0.4273 36 1 4.0149 -7.7236 -0.9901 37 1 4.8040 -9.3725 -1.0539 38 1 6.0278 -11.4767 -1.1346 39 1 7.8343 -7.6570 1.4512 40 1 10.9417 -8.7154 1.7023 41 1 9.8003 -8.8533 3.0659 42 1 10.7355 -10.9822 3.7358 43 1 12.1075 -9.8766 3.4824 44 1 12.6628 -11.9619 2.3877 45 1 12.2698 -10.7877 1.1090 46 1 10.4682 -12.9859 2.2211 47 1 11.1145 -12.8470 0.5648 48 1 5.2841 -4.5399 -0.1975 49 1 3.9513 -2.4811 -0.0046 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018830139.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:37 Heat of formation + Delta-G solvation = 13.355578 kcal Electronic energy + Delta-G solvation = -31806.670607 eV Core-core repulsion = 27471.084893 eV Total energy + Delta-G solvation = -4335.585714 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.90320 -40.14028 -38.71681 -37.72713 -36.50638 -35.95107 -33.96444 -32.52691 -32.12933 -31.05505 -30.14983 -29.46722 -28.90133 -27.64491 -25.32465 -24.68558 -23.61198 -22.39959 -22.22286 -21.55214 -21.31658 -19.97892 -19.00586 -18.26697 -18.00173 -17.63274 -17.04251 -16.45522 -16.13559 -15.57827 -15.09469 -14.81778 -14.54528 -14.45161 -14.36994 -14.27517 -14.08822 -13.87430 -13.71552 -13.54430 -13.51447 -13.15579 -13.10814 -12.83671 -12.76379 -12.56682 -12.43255 -11.79789 -11.62806 -11.51700 -11.44795 -11.42885 -11.25045 -11.04540 -10.99703 -10.85626 -10.68384 -10.38107 -9.84933 -9.69785 -9.62050 -9.11617 -8.66273 -8.46442 -8.14754 -7.89735 -6.87457 -6.40375 -3.97592 0.75161 0.95824 2.19674 2.27947 2.30755 2.63250 3.00298 3.17314 3.18827 3.24507 3.36320 3.83635 4.01913 4.09766 4.30704 4.40585 4.43225 4.58029 4.62230 4.69354 4.79361 4.88619 4.92439 5.05557 5.12964 5.14140 5.16383 5.20051 5.30841 5.35962 5.42786 5.51848 5.58496 5.68660 5.71765 5.73260 5.80934 5.85783 5.90281 6.09241 6.16710 6.21312 6.24604 6.36477 6.41883 6.47230 6.77286 6.79337 6.92574 7.07514 7.12989 7.15960 7.36488 7.49436 7.77312 7.84487 8.05294 8.45693 9.05756 9.75632 10.77716 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.001525 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.368232 B =18361.807463 C =19673.687355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.146 3.854 11 C -0.178 4.178 12 C -0.093 4.093 13 C 0.035 3.965 14 N -0.656 5.656 15 C 0.554 3.446 16 O -0.527 6.527 17 C -0.159 4.159 18 C -0.068 4.068 19 C -0.135 4.135 20 C 0.117 3.883 21 N -0.586 5.586 22 H 0.414 0.586 23 C 0.069 3.931 24 C -0.154 4.154 25 C -0.110 4.110 26 C 0.000 4.000 27 C -0.050 4.050 28 C -0.120 4.120 29 C -0.115 4.115 30 C -0.055 4.055 31 C -0.064 4.064 32 C -0.220 4.220 33 H 0.269 0.731 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.400 0.600 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.126 0.874 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.154 -28.537 0.293 35.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.198 4.198 12 C -0.113 4.113 13 C -0.057 4.057 14 N -0.301 5.301 15 C 0.343 3.657 16 O -0.404 6.404 17 C -0.163 4.163 18 C -0.088 4.088 19 C -0.156 4.156 20 C 0.008 3.992 21 N -0.188 5.188 22 H 0.251 0.749 23 C -0.039 4.039 24 C -0.161 4.161 25 C -0.115 4.115 26 C -0.020 4.020 27 C -0.088 4.088 28 C -0.158 4.158 29 C -0.153 4.153 30 C -0.093 4.093 31 C -0.083 4.083 32 C -0.240 4.240 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.235 0.765 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.144 0.856 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 21.060 -27.784 0.746 34.871 hybrid contribution 0.050 -0.133 -0.605 0.622 sum 21.110 -27.917 0.141 35.000 Atomic orbital electron populations 1.70062 1.05925 1.27480 1.46395 1.25281 0.95848 0.98810 0.96626 0.85647 0.79240 0.80384 0.78187 1.19038 1.20189 1.20173 1.21392 0.91899 0.80821 1.52433 0.88952 1.83970 1.34287 1.11428 1.78433 1.19415 0.90281 0.88120 0.92947 1.19980 0.99444 0.89824 1.10540 1.20358 0.91430 0.97461 1.02077 1.17249 0.89893 0.85275 1.13302 1.43076 1.21735 1.17568 1.47705 1.18182 0.80987 0.87528 0.78999 1.90776 1.67666 1.39434 1.42565 1.19595 0.97648 0.94390 1.04697 1.20629 0.98979 0.91701 0.97470 1.19606 0.93694 0.99001 1.03315 1.18382 0.92807 0.88075 0.99939 1.41501 1.18943 1.13258 1.45118 0.74939 1.20289 0.91117 0.95321 0.97127 1.20049 0.96575 0.93934 1.05492 1.18830 0.96424 0.93763 1.02455 1.20654 0.91454 0.95622 0.94237 1.20065 0.94973 0.96722 0.96997 1.21626 0.99011 0.97399 0.97748 1.21547 0.96716 0.97621 0.99369 1.20383 0.91010 0.96722 1.01149 1.20881 0.99895 0.90294 0.97272 1.21115 0.93552 0.98786 1.10558 0.92143 0.86075 0.86744 0.76457 0.85296 0.85758 0.84475 0.90835 0.90650 0.91608 0.91191 0.90968 0.91237 0.90059 0.90547 0.85610 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -11.12 9.48 30.88 0.29 -10.82 16 8 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 9 O -0.18 -5.16 9.75 0.03 0.00 -5.16 16 10 C 0.15 3.63 6.65 -39.08 -0.26 3.37 16 11 C -0.18 -3.78 9.98 -39.42 -0.39 -4.18 16 12 C -0.09 -1.67 9.96 -39.41 -0.39 -2.06 16 13 C 0.04 0.65 6.30 -83.65 -0.53 0.12 16 14 N -0.66 -9.67 5.28 -10.74 -0.06 -9.72 16 15 C 0.55 8.78 7.61 -12.43 -0.09 8.69 16 16 O -0.53 -10.34 13.76 5.28 0.07 -10.26 16 17 C -0.16 -2.02 5.87 -104.98 -0.62 -2.64 16 18 C -0.07 -0.65 9.46 -39.53 -0.37 -1.03 16 19 C -0.14 -1.16 9.99 -39.87 -0.40 -1.56 16 20 C 0.12 1.12 7.27 -83.86 -0.61 0.51 16 21 N -0.59 -4.19 6.04 -6.67 -0.04 -4.23 16 22 H 0.41 1.66 8.96 -40.82 -0.37 1.29 16 23 C 0.07 0.52 7.01 -81.49 -0.57 -0.05 16 24 C -0.15 -1.46 6.12 -102.79 -0.63 -2.09 16 25 C -0.11 -1.24 6.37 -105.32 -0.67 -1.91 16 26 C 0.00 0.00 9.64 -38.85 -0.37 -0.38 16 27 C -0.05 -0.38 6.29 -27.69 -0.17 -0.56 16 28 C -0.12 -0.65 5.92 -26.46 -0.16 -0.81 16 29 C -0.11 -0.50 5.89 -26.51 -0.16 -0.66 16 30 C -0.05 -0.25 6.30 -27.50 -0.17 -0.42 16 31 C -0.06 -1.33 8.69 -39.41 -0.34 -1.67 16 32 C -0.22 -5.12 9.16 -39.42 -0.36 -5.48 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 35 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.40 4.32 6.84 -40.82 -0.28 4.04 16 37 H 0.13 0.91 6.38 -52.49 -0.33 0.58 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.14 1.79 7.64 -52.49 -0.40 1.39 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.13 2.62 6.22 -52.49 -0.33 2.30 16 49 H 0.13 3.04 5.63 -52.48 -0.30 2.74 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -35.53 403.26 -11.35 -46.88 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.06 Total: 7.93 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -7.08 Total: -22.65 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.66 Total: -38.82 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.07 Total: -15.42 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.53 -11.35 -46.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018830139.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.237 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds