Wall clock time and date at job start Tue Mar 31 2020 06:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86791 * 120.00082 * 2 1 4 4 H 1.48495 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47266 * 300.00158 * 3 2 1 6 6 H 1.48502 * 109.47354 * 59.99881 * 3 2 1 7 7 C 1.38632 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99527 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00383 * 0.02562 * 7 2 1 10 10 C 1.35771 * 116.99958 * 174.96122 * 9 7 2 11 11 C 1.38913 * 119.99701 * 185.07210 * 10 9 7 12 12 C 1.37997 * 120.00280 * 179.76359 * 11 10 9 13 13 C 1.38935 * 119.99856 * 0.52139 * 12 11 10 14 14 N 1.39912 * 120.00639 * 179.71965 * 13 12 11 15 15 C 1.34776 * 120.00152 * 215.15469 * 14 13 12 16 16 O 1.21593 * 120.00002 * 355.48237 * 15 14 13 17 17 C 1.47630 * 120.00188 * 175.47670 * 15 14 13 18 18 C 1.40221 * 119.96320 * 359.73259 * 17 15 14 19 19 C 1.36307 * 120.61804 * 179.69749 * 18 17 15 20 20 C 1.39339 * 120.29789 * 0.61099 * 19 18 17 21 21 N 1.37496 * 133.13332 * 179.68174 * 20 19 18 22 22 H 0.97001 * 124.98031 * 359.86917 * 21 20 19 23 23 C 1.36662 * 110.04684 * 179.89067 * 21 20 19 24 24 C 1.34631 * 109.61778 * 0.08257 * 23 21 20 25 25 C 1.41028 * 119.66040 * 359.64030 * 20 19 18 26 26 C 1.39140 * 119.96793 * 180.02562 * 17 15 14 27 27 C 1.50680 * 124.71749 * 179.97438 * 24 23 21 28 28 C 1.53389 * 108.45300 * 343.73385 * 27 24 23 29 29 C 1.53131 * 109.30396 * 49.47076 * 28 27 24 30 30 C 1.51164 * 126.73277 * 180.18487 * 23 21 20 31 31 C 1.38938 * 119.99319 * 359.73540 * 13 12 11 32 32 C 1.38003 * 119.99549 * 0.02562 * 31 13 12 33 33 H 0.97000 * 119.99773 * 0.02562 * 1 2 3 34 34 H 1.08001 * 119.99817 * 0.02562 * 11 10 9 35 35 H 1.08005 * 119.99824 * 180.22974 * 12 11 10 36 36 H 0.97002 * 119.99968 * 35.15233 * 14 13 12 37 37 H 1.08001 * 119.68927 * 0.02562 * 18 17 15 38 38 H 1.08003 * 119.84797 * 180.27048 * 19 18 17 39 39 H 1.08000 * 120.25995 * 0.02562 * 26 17 15 40 40 H 1.09001 * 109.63395 * 103.47721 * 27 24 23 41 41 H 1.08993 * 109.64000 * 224.09085 * 27 24 23 42 42 H 1.09002 * 109.52232 * 289.51037 * 28 27 24 43 43 H 1.08998 * 109.51179 * 169.42590 * 28 27 24 44 44 H 1.09003 * 109.47068 * 169.97558 * 29 28 27 45 45 H 1.09005 * 109.46942 * 49.98346 * 29 28 27 46 46 H 1.08995 * 109.63288 * 282.69031 * 30 23 21 47 47 H 1.08998 * 109.62933 * 43.27697 * 30 23 21 48 48 H 1.08002 * 120.00434 * 179.97438 * 31 13 12 49 49 H 1.08004 * 119.99993 * 179.97438 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0016 10 6 2.0703 -3.5044 -0.1083 11 6 1.4352 -4.7346 -0.2219 12 6 2.1826 -5.8892 -0.3353 13 6 3.5703 -5.8221 -0.3250 14 7 4.3282 -6.9931 -0.4340 15 6 5.4935 -7.1063 0.2336 16 8 5.9269 -6.1616 0.8646 17 6 6.2436 -8.3773 0.1990 18 6 5.7403 -9.4682 -0.5241 19 6 6.4249 -10.6459 -0.5702 20 6 7.6311 -10.7851 0.1134 21 7 8.5182 -11.8263 0.2522 22 1 8.4138 -12.7032 -0.1493 23 6 9.5685 -11.4452 1.0391 24 6 9.3996 -10.1683 1.4311 25 6 8.1460 -9.6975 0.8488 26 6 7.4463 -8.4936 0.8890 27 6 10.3576 -9.4066 2.3100 28 6 11.2934 -10.4115 2.9934 29 6 11.8674 -11.3650 1.9415 30 6 10.7576 -12.2917 1.4322 31 6 4.2054 -4.5921 -0.2060 32 6 3.4577 -3.4373 -0.0975 33 1 -0.4850 0.8401 -0.0004 34 1 0.3565 -4.7872 -0.2257 35 1 1.6887 -6.8453 -0.4273 36 1 4.0149 -7.7236 -0.9901 37 1 4.8040 -9.3725 -1.0539 38 1 6.0278 -11.4767 -1.1346 39 1 7.8343 -7.6570 1.4512 40 1 10.9417 -8.7154 1.7023 41 1 9.8003 -8.8533 3.0659 42 1 10.7355 -10.9822 3.7358 43 1 12.1075 -9.8766 3.4824 44 1 12.6628 -11.9619 2.3877 45 1 12.2698 -10.7877 1.1090 46 1 10.4682 -12.9859 2.2211 47 1 11.1145 -12.8470 0.5648 48 1 5.2841 -4.5399 -0.1975 49 1 3.9513 -2.4811 -0.0046 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018830139.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:36 Heat of formation + Delta-G solvation = -7.944036 kcal Electronic energy + Delta-G solvation = -31807.594227 eV Core-core repulsion = 27471.084893 eV Total energy + Delta-G solvation = -4336.509334 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.59097 -41.52350 -40.40035 -38.62131 -37.99336 -36.69971 -35.46740 -34.18022 -33.15329 -31.92173 -31.73721 -30.40438 -29.54715 -29.03346 -27.29312 -25.46863 -24.60630 -23.85798 -22.98530 -22.79522 -22.16340 -21.24725 -20.05984 -19.59939 -19.19927 -18.76987 -18.33505 -17.99417 -16.97081 -16.53015 -16.29449 -16.22262 -15.95533 -15.64449 -15.49159 -15.28331 -15.15804 -15.00850 -14.84843 -14.71272 -14.64432 -14.26460 -14.17813 -13.75080 -13.68483 -13.59153 -13.45677 -13.31076 -13.19159 -13.07431 -12.73102 -12.45120 -12.33277 -12.11764 -12.08615 -11.67181 -11.53394 -11.43305 -11.37686 -11.18800 -10.86269 -10.59001 -10.53494 -9.84259 -9.25595 -8.63831 -8.54867 -8.47240 -6.13835 -0.16367 0.20252 0.52807 0.61859 1.34832 1.41964 1.52787 1.62910 1.86381 2.04861 2.09758 2.18076 2.79228 2.92739 3.15125 3.50628 3.54289 3.68944 3.72403 3.90825 4.03248 4.07564 4.10592 4.12146 4.17321 4.23820 4.36138 4.47711 4.48172 4.54886 4.65088 4.66301 4.67288 4.74627 4.83150 4.91525 4.98528 5.05327 5.07663 5.11877 5.13508 5.20434 5.25489 5.33760 5.34648 5.40736 5.47565 5.48472 5.58496 5.64340 5.69729 5.78050 6.02198 6.05834 6.15772 6.53105 6.63597 6.97471 7.20126 7.76508 8.75568 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.001525 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.368232 B =18361.807463 C =19673.687355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.414 4.414 8 H 0.096 0.904 9 O -0.226 6.226 10 C 0.107 3.893 11 C -0.178 4.178 12 C -0.075 4.075 13 C 0.060 3.940 14 N -0.642 5.642 15 C 0.554 3.446 16 O -0.573 6.573 17 C -0.173 4.173 18 C -0.069 4.069 19 C -0.122 4.122 20 C 0.112 3.888 21 N -0.572 5.572 22 H 0.432 0.568 23 C 0.084 3.916 24 C -0.190 4.190 25 C -0.135 4.135 26 C -0.021 4.021 27 C -0.052 4.052 28 C -0.117 4.117 29 C -0.113 4.113 30 C -0.053 4.053 31 C -0.077 4.077 32 C -0.229 4.229 33 H 0.273 0.727 34 H 0.132 0.868 35 H 0.170 0.830 36 H 0.424 0.576 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.123 0.877 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.811 -33.378 -0.798 40.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.490 4.490 8 H 0.113 0.887 9 O -0.133 6.133 10 C 0.057 3.943 11 C -0.198 4.198 12 C -0.095 4.095 13 C -0.033 4.033 14 N -0.289 5.289 15 C 0.345 3.655 16 O -0.454 6.454 17 C -0.178 4.178 18 C -0.089 4.089 19 C -0.142 4.142 20 C 0.002 3.998 21 N -0.175 5.175 22 H 0.272 0.728 23 C -0.025 4.025 24 C -0.196 4.196 25 C -0.139 4.139 26 C -0.040 4.040 27 C -0.090 4.090 28 C -0.155 4.155 29 C -0.151 4.151 30 C -0.090 4.090 31 C -0.097 4.097 32 C -0.249 4.249 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.187 0.813 36 H 0.265 0.735 37 H 0.177 0.823 38 H 0.181 0.819 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.141 0.859 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.743 -32.740 -0.378 39.866 hybrid contribution -0.243 0.931 -0.254 0.995 sum 22.500 -31.809 -0.632 38.967 Atomic orbital electron populations 1.70185 1.07788 1.28717 1.48774 1.26515 0.96882 1.02484 0.95854 0.84562 0.78021 0.75074 0.78755 1.18099 1.18967 1.19168 1.21803 0.92376 0.81617 1.53213 0.88650 1.83931 1.35556 1.12405 1.81399 1.19940 0.90992 0.88460 0.94929 1.20332 1.00413 0.89487 1.09528 1.20798 0.90817 0.98499 0.99352 1.17404 0.90680 0.85701 1.09529 1.42949 1.21103 1.16901 1.47954 1.18750 0.80755 0.88120 0.77847 1.90760 1.68736 1.41358 1.44515 1.19389 0.97706 0.93900 1.06795 1.20887 1.00129 0.90874 0.96985 1.19997 0.92603 0.99517 1.02131 1.18619 0.93478 0.88157 0.99579 1.41531 1.18063 1.13556 1.44381 0.72750 1.20809 0.91475 0.94874 0.95310 1.20328 0.96827 0.95307 1.07107 1.19081 0.97489 0.93886 1.03483 1.20583 0.92360 0.95970 0.95120 1.20073 0.95119 0.97230 0.96570 1.21615 0.98683 0.97166 0.97990 1.21566 0.97214 0.97517 0.98812 1.20552 0.89483 0.96482 1.02522 1.20939 0.99750 0.90905 0.98155 1.21086 0.93392 0.99183 1.11231 0.91773 0.85052 0.81276 0.73547 0.82259 0.81891 0.86828 0.91534 0.92257 0.91610 0.90367 0.88768 0.91845 0.88441 0.88316 0.85919 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.01 13.67 21.61 0.30 -56.72 16 2 C -0.02 -1.14 5.49 84.82 0.47 -0.68 16 3 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.41 -25.08 9.48 67.91 0.64 -24.44 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -13.97 9.75 -22.80 -0.22 -14.20 16 10 C 0.11 5.57 6.65 22.59 0.15 5.72 16 11 C -0.18 -7.50 9.98 22.37 0.22 -7.28 16 12 C -0.07 -2.48 9.96 22.38 0.22 -2.26 16 13 C 0.06 2.14 6.30 38.19 0.24 2.38 16 14 N -0.64 -17.36 5.28 -306.15 -1.62 -18.98 16 15 C 0.55 17.32 7.61 86.72 0.66 17.98 16 16 O -0.57 -23.34 13.76 -4.01 -0.06 -23.40 16 17 C -0.17 -4.29 5.87 -20.10 -0.12 -4.40 16 18 C -0.07 -1.10 9.46 22.30 0.21 -0.89 16 19 C -0.12 -1.60 9.99 22.08 0.22 -1.38 16 20 C 0.11 1.85 7.27 39.20 0.28 2.14 16 21 N -0.57 -6.22 6.04 -175.00 -1.06 -7.28 16 22 H 0.43 1.53 8.96 -92.71 -0.83 0.70 16 23 C 0.08 1.06 7.01 41.13 0.29 1.34 16 24 C -0.19 -3.51 6.12 -18.68 -0.11 -3.63 16 25 C -0.13 -3.01 6.37 -20.32 -0.13 -3.14 16 26 C -0.02 -0.55 9.64 22.74 0.22 -0.33 16 27 C -0.05 -0.84 6.29 29.97 0.19 -0.65 16 28 C -0.12 -1.14 5.92 30.77 0.18 -0.96 16 29 C -0.11 -0.69 5.89 30.74 0.18 -0.51 16 30 C -0.05 -0.28 6.30 30.09 0.19 -0.09 16 31 C -0.08 -3.32 8.69 22.38 0.19 -3.12 16 32 C -0.23 -11.20 9.16 22.38 0.20 -11.00 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.13 5.22 8.06 -2.91 -0.02 5.20 16 35 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.42 7.34 6.84 -92.71 -0.63 6.71 16 37 H 0.16 1.45 6.38 -2.91 -0.02 1.43 16 38 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.11 3.37 7.64 -2.91 -0.02 3.35 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.06 0.48 8.11 -2.38 -0.02 0.47 16 46 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.12 5.34 6.22 -2.91 -0.02 5.32 16 49 H 0.12 5.84 5.63 -2.91 -0.02 5.82 16 Total: -1.00 -85.68 403.26 3.55 -82.13 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.43 Total: 26.96 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 4.61 Total: -35.18 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -2.38 Total: -82.98 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.28 Total: -37.59 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -85.68 3.55 -82.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018830139.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.184 kcal (2) G-P(sol) polarization free energy of solvation -85.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds