Wall clock time and date at job start Tue Mar 31 2020 05:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46504 * 120.00065 * 2 1 4 4 C 1.50702 * 109.46829 * 269.99757 * 3 2 1 5 5 H 1.08005 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00090 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00035 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99818 * 0.02562 * 6 4 3 9 9 H 1.48491 * 109.47171 * 90.00040 * 8 6 4 10 10 H 1.48507 * 109.46928 * 210.00097 * 8 6 4 11 11 H 1.48499 * 109.47152 * 329.99610 * 8 6 4 12 12 C 1.39099 * 120.00350 * 179.97438 * 2 1 3 13 13 C 1.39282 * 119.89025 * 359.97438 * 12 2 1 14 14 C 1.36571 * 120.11657 * 180.02562 * 13 12 2 15 15 C 1.40211 * 119.88707 * 359.97438 * 14 13 12 16 16 C 1.46529 * 120.11106 * 179.97438 * 15 14 13 17 17 C 1.36571 * 119.99800 * 36.22499 * 16 15 14 18 18 C 1.43197 * 119.99822 * 7.41696 * 17 16 15 19 19 N 6.08118 * 92.74112 * 201.60565 * 2 1 3 20 20 C 1.47398 * 119.99794 * 187.41640 * 17 16 15 21 21 N 1.29246 * 124.84484 * 359.97438 * 20 17 16 22 22 C 1.34390 * 117.90198 * 180.02562 * 21 20 17 23 23 C 1.41275 * 128.76618 * 180.02562 * 22 21 20 24 24 C 1.36112 * 120.53705 * 180.02562 * 23 22 21 25 25 C 1.38777 * 120.78369 * 359.97438 * 24 23 22 26 26 C 1.37678 * 120.01283 * 359.97438 * 25 24 23 27 27 C 1.39352 * 120.05637 * 0.02823 * 26 25 24 28 28 S 1.75817 * 124.83862 * 180.02562 * 20 17 16 29 29 C 1.40207 * 119.77727 * 0.25499 * 15 14 13 30 30 C 1.36578 * 119.88506 * 359.48593 * 29 15 14 31 31 H 1.08998 * 109.47563 * 270.00062 * 1 2 3 32 32 H 1.09000 * 109.47328 * 30.00407 * 1 2 3 33 33 H 1.09006 * 109.46911 * 150.00769 * 1 2 3 34 34 H 1.08997 * 109.47229 * 29.99467 * 3 2 1 35 35 H 1.08997 * 109.47268 * 149.99961 * 3 2 1 36 36 H 0.97004 * 119.99719 * 180.02562 * 7 6 4 37 37 H 1.08002 * 119.93698 * 0.02562 * 13 12 2 38 38 H 1.08003 * 120.05613 * 180.02562 * 14 13 12 39 39 H 1.07993 * 120.00251 * 216.21881 * 16 15 14 40 40 H 1.08003 * 119.73477 * 359.97438 * 23 22 21 41 41 H 1.08007 * 119.60456 * 179.69723 * 24 23 22 42 42 H 1.08002 * 119.99363 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.97878 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.05438 * 179.74354 * 29 15 14 45 45 H 1.08005 * 119.94392 * 180.25573 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1260 2.8779 -1.6729 7 7 3.3447 3.2577 -2.9128 8 14 3.7329 3.9292 -0.2531 9 1 5.1064 3.5082 0.1228 10 1 3.7477 5.3560 -0.6647 11 1 2.8270 3.7593 0.9112 12 6 2.1605 -1.2046 0.0005 13 6 1.4618 -2.4095 0.0016 14 6 2.1401 -3.5949 0.0027 15 6 3.5422 -3.5976 0.0021 16 6 4.2749 -4.8665 0.0038 17 6 3.7897 -5.9361 -0.6933 18 6 2.6550 -5.7759 -1.5520 19 7 1.7557 -5.6474 -2.2366 20 6 4.4341 -7.2552 -0.5617 21 7 5.4600 -7.5048 0.1837 22 6 5.9359 -8.7615 0.1983 23 6 7.0316 -9.2842 0.9208 24 6 7.3706 -10.5977 0.8090 25 6 6.6485 -11.4498 -0.0146 26 6 5.5749 -10.9698 -0.7305 27 6 5.2124 -9.6281 -0.6293 28 16 3.9175 -8.7132 -1.3974 29 6 4.2408 -2.3820 0.0059 30 6 3.5533 -1.2019 -0.0005 31 1 -0.3634 0.0000 1.0276 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3633 -0.8901 -0.5137 34 1 1.6084 2.0284 0.5137 35 1 3.1498 1.1384 0.5138 36 1 3.8216 4.0836 -3.0901 37 1 0.3818 -2.4063 0.0016 38 1 1.5974 -4.5287 0.0031 39 1 5.1985 -4.9561 0.5562 40 1 7.6056 -8.6360 1.5666 41 1 8.2141 -10.9802 1.3645 42 1 6.9289 -12.4898 -0.0941 43 1 5.0131 -11.6336 -1.3710 44 1 5.3208 -2.3788 0.0097 45 1 4.0905 -0.2649 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019074827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:53 Heat of formation + Delta-G solvation = 145.432406 kcal Electronic energy + Delta-G solvation = -28548.960387 eV Core-core repulsion = 24623.740393 eV Total energy + Delta-G solvation = -3925.219994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 375.110 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.52785 -39.54031 -37.85648 -36.76842 -35.90943 -33.72071 -32.71104 -31.45866 -31.01721 -30.41229 -28.78322 -28.49891 -26.12291 -24.64535 -23.87565 -23.12407 -22.34996 -21.72876 -20.87258 -20.07426 -18.87596 -17.60659 -17.08331 -16.83996 -16.56498 -15.88026 -15.60838 -15.24636 -15.11583 -14.82031 -14.52150 -14.46356 -14.20403 -13.93510 -13.71179 -13.55813 -13.38295 -13.09682 -12.86357 -12.74592 -12.54476 -12.38543 -12.35519 -12.29001 -12.17460 -11.79041 -11.64471 -11.40981 -11.15220 -11.12827 -10.79865 -10.53379 -10.45209 -10.33634 -10.09725 -9.94740 -9.71084 -9.22022 -8.78637 -8.72984 -8.47603 -8.34241 -6.63661 -6.25777 -4.28018 -0.21088 0.78729 0.83885 0.91998 1.39609 1.85505 2.00232 2.22266 2.60748 3.12973 3.20316 3.22031 3.30690 3.42119 3.51968 3.74270 4.15566 4.20630 4.21462 4.28824 4.49323 4.61480 4.83879 4.95926 4.98767 5.03570 5.11965 5.17103 5.27046 5.50371 5.51028 5.61817 5.68398 5.78469 5.79819 5.81835 5.86868 5.94011 6.01952 6.08565 6.14856 6.22432 6.33569 6.49403 6.54079 6.72248 6.75883 6.86734 7.15593 7.29115 7.37256 7.53968 7.73653 8.00306 8.33626 8.80419 9.32129 10.86881 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.001724 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.261355 B =16235.717014 C =16954.447214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.592 5.592 3 C 0.215 3.785 4 C -0.542 4.542 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.272 3.728 13 C -0.223 4.223 14 C -0.028 4.028 15 C -0.208 4.208 16 C 0.109 3.891 17 C -0.084 4.084 18 C 0.258 3.742 19 N -0.410 5.410 20 C 0.196 3.804 21 N -0.473 5.473 22 C 0.095 3.905 23 C -0.067 4.067 24 C -0.107 4.107 25 C -0.107 4.107 26 C -0.071 4.071 27 C -0.179 4.179 28 S 0.063 5.937 29 C -0.022 4.022 30 C -0.197 4.197 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.267 0.733 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 -25.542 9.878 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.292 5.292 3 C 0.094 3.906 4 C -0.580 4.580 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.160 3.840 13 C -0.246 4.246 14 C -0.047 4.047 15 C -0.212 4.212 16 C 0.081 3.919 17 C -0.093 4.093 18 C -0.057 4.057 19 N -0.086 5.086 20 C -0.085 4.085 21 N -0.186 5.186 22 C -0.026 4.026 23 C -0.088 4.088 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.093 4.093 27 C -0.298 4.298 28 S 0.322 5.678 29 C -0.042 4.042 30 C -0.220 4.220 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.355 -24.774 8.249 26.326 hybrid contribution 1.314 0.354 1.123 1.765 sum 4.669 -24.420 9.372 26.570 Atomic orbital electron populations 1.21659 0.80345 1.03009 1.00398 1.46905 1.05153 1.04380 1.72759 1.19823 0.92125 0.80337 0.98332 1.21393 1.37726 1.07640 0.91250 0.90439 1.24893 0.95253 0.97154 0.95549 1.69894 1.40663 1.23439 1.18687 0.86913 0.79972 0.80353 0.82880 1.19737 1.20816 1.19014 1.18245 0.91702 0.85997 0.88024 1.20299 0.99694 0.91024 1.13592 1.20789 0.92695 0.97319 0.93938 1.18499 0.93097 0.92066 1.17505 1.22821 0.94870 0.88690 0.85538 1.15271 0.96963 0.90875 1.06143 1.25164 0.92700 0.94520 0.93310 1.81340 1.10687 1.06311 1.10240 1.24755 0.93507 0.95760 0.94476 1.66433 1.11589 1.19196 1.21392 1.19126 0.97998 0.86732 0.98744 1.20485 0.94496 0.95521 0.98266 1.20717 1.00121 0.92997 0.98998 1.21125 0.95040 1.00162 0.96557 1.20355 0.97487 0.91766 0.99726 1.23756 1.01525 0.99853 1.04689 1.85219 1.31346 1.03172 1.48046 1.20766 0.99251 0.90656 0.93522 1.20601 0.92406 0.99260 1.09688 0.93705 0.90642 0.91894 0.94917 0.95022 0.92307 0.86028 0.86794 0.82876 0.84632 0.84809 0.84846 0.85299 0.85645 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.17 59.84 0.61 2.01 16 2 N -0.59 -11.31 2.97 -180.95 -0.54 -11.85 16 3 C 0.21 4.66 3.96 -5.19 -0.02 4.64 16 4 C -0.54 -14.29 9.94 -34.44 -0.34 -14.63 16 5 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 6 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 7 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 8 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 12 C 0.27 4.92 6.56 -83.79 -0.55 4.37 16 13 C -0.22 -3.58 9.14 -39.80 -0.36 -3.94 16 14 C -0.03 -0.41 8.23 -39.44 -0.32 -0.74 16 15 C -0.21 -2.87 5.46 -105.08 -0.57 -3.44 16 16 C 0.11 1.24 9.44 -36.84 -0.35 0.89 16 17 C -0.08 -1.03 5.78 -104.85 -0.61 -1.64 16 18 C 0.26 3.68 11.27 -22.42 -0.25 3.42 16 19 N -0.41 -6.62 18.32 41.90 0.77 -5.86 16 20 C 0.20 2.37 7.27 -14.91 -0.11 2.26 16 21 N -0.47 -5.73 10.05 -8.55 -0.09 -5.82 16 22 C 0.10 1.06 6.94 -84.94 -0.59 0.47 16 23 C -0.07 -0.57 10.05 -39.19 -0.39 -0.96 16 24 C -0.11 -0.68 9.93 -40.15 -0.40 -1.08 16 25 C -0.11 -0.67 10.05 -39.59 -0.40 -1.07 16 26 C -0.07 -0.57 10.07 -39.37 -0.40 -0.96 16 27 C -0.18 -1.90 6.53 -38.52 -0.25 -2.15 16 28 S 0.06 0.71 22.77 -107.50 -2.45 -1.73 16 29 C -0.02 -0.32 9.75 -39.44 -0.38 -0.71 16 30 C -0.20 -3.45 9.14 -39.79 -0.36 -3.81 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 33 H 0.06 0.90 6.17 -51.93 -0.32 0.58 16 34 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 35 H 0.03 0.67 5.60 -51.93 -0.29 0.38 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.12 1.78 6.11 -52.49 -0.32 1.46 16 38 H 0.11 1.58 6.20 -52.48 -0.33 1.25 16 39 H 0.15 1.43 7.73 -52.49 -0.41 1.02 16 40 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 41 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 42 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 45 H 0.14 2.56 6.11 -52.48 -0.32 2.24 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -31.14 399.37 -11.23 -42.37 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.90 Total: 2.17 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -6.15 Total: -15.13 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.92 Total: -48.71 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.45 Total: -1.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.14 -11.23 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019074827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.805 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds