Wall clock time and date at job start Tue Mar 31 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46504 * 120.00065 * 2 1 4 4 C 1.50702 * 109.46829 * 269.99757 * 3 2 1 5 5 H 1.08005 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00090 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00035 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99818 * 0.02562 * 6 4 3 9 9 H 1.48491 * 109.47171 * 90.00040 * 8 6 4 10 10 H 1.48507 * 109.46928 * 210.00097 * 8 6 4 11 11 H 1.48499 * 109.47152 * 329.99610 * 8 6 4 12 12 C 1.39099 * 120.00350 * 179.97438 * 2 1 3 13 13 C 1.39282 * 119.89025 * 359.97438 * 12 2 1 14 14 C 1.36571 * 120.11657 * 180.02562 * 13 12 2 15 15 C 1.40211 * 119.88707 * 359.97438 * 14 13 12 16 16 C 1.46529 * 120.11106 * 179.97438 * 15 14 13 17 17 C 1.36571 * 119.99800 * 36.22499 * 16 15 14 18 18 C 1.43197 * 119.99822 * 7.41696 * 17 16 15 19 19 N 6.08118 * 92.74112 * 201.60565 * 2 1 3 20 20 C 1.47398 * 119.99794 * 187.41640 * 17 16 15 21 21 N 1.29246 * 124.84484 * 359.97438 * 20 17 16 22 22 C 1.34390 * 117.90198 * 180.02562 * 21 20 17 23 23 C 1.41275 * 128.76618 * 180.02562 * 22 21 20 24 24 C 1.36112 * 120.53705 * 180.02562 * 23 22 21 25 25 C 1.38777 * 120.78369 * 359.97438 * 24 23 22 26 26 C 1.37678 * 120.01283 * 359.97438 * 25 24 23 27 27 C 1.39352 * 120.05637 * 0.02823 * 26 25 24 28 28 S 1.75817 * 124.83862 * 180.02562 * 20 17 16 29 29 C 1.40207 * 119.77727 * 0.25499 * 15 14 13 30 30 C 1.36578 * 119.88506 * 359.48593 * 29 15 14 31 31 H 1.08998 * 109.47563 * 270.00062 * 1 2 3 32 32 H 1.09000 * 109.47328 * 30.00407 * 1 2 3 33 33 H 1.09006 * 109.46911 * 150.00769 * 1 2 3 34 34 H 1.08997 * 109.47229 * 29.99467 * 3 2 1 35 35 H 1.08997 * 109.47268 * 149.99961 * 3 2 1 36 36 H 0.97004 * 119.99719 * 180.02562 * 7 6 4 37 37 H 1.08002 * 119.93698 * 0.02562 * 13 12 2 38 38 H 1.08003 * 120.05613 * 180.02562 * 14 13 12 39 39 H 1.07993 * 120.00251 * 216.21881 * 16 15 14 40 40 H 1.08003 * 119.73477 * 359.97438 * 23 22 21 41 41 H 1.08007 * 119.60456 * 179.69723 * 24 23 22 42 42 H 1.08002 * 119.99363 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.97878 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.05438 * 179.74354 * 29 15 14 45 45 H 1.08005 * 119.94392 * 180.25573 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1260 2.8779 -1.6729 7 7 3.3447 3.2577 -2.9128 8 14 3.7329 3.9292 -0.2531 9 1 5.1064 3.5082 0.1228 10 1 3.7477 5.3560 -0.6647 11 1 2.8270 3.7593 0.9112 12 6 2.1605 -1.2046 0.0005 13 6 1.4618 -2.4095 0.0016 14 6 2.1401 -3.5949 0.0027 15 6 3.5422 -3.5976 0.0021 16 6 4.2749 -4.8665 0.0038 17 6 3.7897 -5.9361 -0.6933 18 6 2.6550 -5.7759 -1.5520 19 7 1.7557 -5.6474 -2.2366 20 6 4.4341 -7.2552 -0.5617 21 7 5.4600 -7.5048 0.1837 22 6 5.9359 -8.7615 0.1983 23 6 7.0316 -9.2842 0.9208 24 6 7.3706 -10.5977 0.8090 25 6 6.6485 -11.4498 -0.0146 26 6 5.5749 -10.9698 -0.7305 27 6 5.2124 -9.6281 -0.6293 28 16 3.9175 -8.7132 -1.3974 29 6 4.2408 -2.3820 0.0059 30 6 3.5533 -1.2019 -0.0005 31 1 -0.3634 0.0000 1.0276 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3633 -0.8901 -0.5137 34 1 1.6084 2.0284 0.5137 35 1 3.1498 1.1384 0.5138 36 1 3.8216 4.0836 -3.0901 37 1 0.3818 -2.4063 0.0016 38 1 1.5974 -4.5287 0.0031 39 1 5.1985 -4.9561 0.5562 40 1 7.6056 -8.6360 1.5666 41 1 8.2141 -10.9802 1.3645 42 1 6.9289 -12.4898 -0.0941 43 1 5.0131 -11.6336 -1.3710 44 1 5.3208 -2.3788 0.0097 45 1 4.0905 -0.2649 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019074827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:52 Heat of formation + Delta-G solvation = 129.997191 kcal Electronic energy + Delta-G solvation = -28549.629708 eV Core-core repulsion = 24623.740393 eV Total energy + Delta-G solvation = -3925.889315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 375.110 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.26196 -40.76403 -38.89520 -37.68488 -37.21306 -35.02140 -34.45945 -32.32985 -32.05210 -31.43776 -30.26850 -29.59247 -27.30806 -25.87066 -24.96108 -23.82368 -23.63970 -23.02264 -21.74101 -21.36864 -19.70399 -19.10722 -18.65851 -17.83043 -17.52360 -17.00341 -16.48775 -16.31123 -16.10565 -16.02715 -15.88928 -15.48126 -15.09271 -15.05560 -14.83459 -14.80343 -14.64613 -14.47212 -14.23267 -13.96464 -13.63345 -13.48930 -13.44194 -13.29359 -13.15405 -13.03126 -12.81484 -12.73662 -12.50516 -12.44061 -12.09085 -11.82675 -11.80994 -11.60517 -11.26209 -11.16491 -10.83250 -10.82130 -10.37680 -9.96927 -9.31693 -9.14532 -8.34088 -7.97503 -6.41275 -1.05615 -0.12304 0.10849 0.21223 0.59821 0.60575 0.91011 1.34197 1.36443 1.37348 1.47526 1.49304 2.30371 2.30791 2.38420 2.48387 2.75676 2.96976 3.00108 3.20671 3.51744 3.72477 3.85095 3.99175 4.08115 4.19548 4.26478 4.32744 4.37092 4.42966 4.48679 4.58262 4.67496 4.70511 4.78125 4.80624 4.84501 4.88210 4.96228 5.02068 5.12664 5.16366 5.30328 5.40224 5.44211 5.46697 5.50079 5.62188 5.80472 5.90501 6.07152 6.37720 6.47910 6.48763 6.63975 6.67176 7.24112 8.83099 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.001724 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.261355 B =16235.717014 C =16954.447214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.611 5.611 3 C 0.226 3.774 4 C -0.541 4.541 5 H 0.023 0.977 6 C 0.013 3.987 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.241 1.241 12 C 0.244 3.756 13 C -0.224 4.224 14 C -0.035 4.035 15 C -0.197 4.197 16 C 0.119 3.881 17 C -0.076 4.076 18 C 0.271 3.729 19 N -0.447 5.447 20 C 0.177 3.823 21 N -0.471 5.471 22 C 0.059 3.941 23 C -0.074 4.074 24 C -0.100 4.100 25 C -0.090 4.090 26 C -0.087 4.087 27 C -0.187 4.187 28 S 0.042 5.958 29 C -0.018 4.018 30 C -0.220 4.220 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.268 0.732 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.182 0.818 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 -28.567 12.739 32.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.314 5.314 3 C 0.104 3.896 4 C -0.579 4.579 5 H 0.041 0.959 6 C -0.185 4.185 7 N -0.585 5.585 8 Si 0.770 3.230 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.164 1.164 12 C 0.135 3.865 13 C -0.247 4.247 14 C -0.054 4.054 15 C -0.200 4.200 16 C 0.091 3.909 17 C -0.085 4.085 18 C -0.043 4.043 19 N -0.124 5.124 20 C -0.104 4.104 21 N -0.184 5.184 22 C -0.061 4.061 23 C -0.095 4.095 24 C -0.121 4.121 25 C -0.112 4.112 26 C -0.109 4.109 27 C -0.306 4.306 28 S 0.300 5.700 29 C -0.037 4.037 30 C -0.243 4.243 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.199 0.801 40 H 0.166 0.834 41 H 0.187 0.813 42 H 0.187 0.813 43 H 0.162 0.838 44 H 0.175 0.825 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.672 -27.853 11.132 30.527 hybrid contribution 0.734 0.846 0.172 1.133 sum 6.406 -27.007 11.303 29.970 Atomic orbital electron populations 1.21765 0.78875 1.02772 1.01973 1.46815 1.06108 1.03747 1.74737 1.19509 0.93108 0.81975 0.95044 1.21603 1.36921 1.06919 0.92496 0.95863 1.25890 0.95401 0.98720 0.98530 1.70074 1.42450 1.24373 1.21589 0.85719 0.80135 0.77617 0.79559 1.18499 1.20999 1.16394 1.18484 0.92189 0.86245 0.89621 1.20435 1.00336 0.90725 1.13198 1.20969 0.93407 0.97206 0.93867 1.18709 0.92896 0.92926 1.15429 1.22897 0.95347 0.87050 0.85562 1.15312 0.96015 0.91527 1.05604 1.25504 0.92574 0.93416 0.92838 1.81348 1.11952 1.07591 1.11467 1.24572 0.94406 0.95626 0.95821 1.66384 1.11135 1.20136 1.20778 1.19510 0.99562 0.86570 1.00441 1.20824 0.93805 0.96794 0.98085 1.21192 1.00529 0.92018 0.98312 1.21635 0.93277 1.01816 0.94434 1.20726 0.98550 0.90998 1.00659 1.23950 1.01059 1.00885 1.04704 1.85193 1.32516 1.03612 1.48651 1.21053 1.00792 0.89718 0.92101 1.20654 0.92516 0.99718 1.11365 0.91077 0.92014 0.91026 0.94065 0.94072 0.92280 0.85043 0.85968 0.80054 0.83357 0.81287 0.81282 0.83778 0.82540 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.82 10.17 127.77 1.30 4.12 16 2 N -0.61 -23.91 2.97 -726.41 -2.16 -26.07 16 3 C 0.23 9.96 3.96 85.63 0.34 10.30 16 4 C -0.54 -29.87 9.94 25.60 0.25 -29.61 16 5 H 0.02 1.49 8.06 -2.91 -0.02 1.46 16 6 C 0.01 0.72 5.47 84.65 0.46 1.18 16 7 N -0.95 -57.68 13.96 21.45 0.30 -57.38 16 8 Si 0.95 40.89 27.47 68.60 1.88 42.78 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 12 C 0.24 8.98 6.56 38.49 0.25 9.24 16 13 C -0.22 -7.23 9.14 22.13 0.20 -7.03 16 14 C -0.04 -1.02 8.23 22.36 0.18 -0.84 16 15 C -0.20 -5.17 5.46 -20.16 -0.11 -5.28 16 16 C 0.12 2.50 9.44 24.04 0.23 2.72 16 17 C -0.08 -1.80 5.78 -20.01 -0.12 -1.92 16 18 C 0.27 7.70 11.27 88.31 1.00 8.70 16 19 N -0.45 -14.67 18.32 19.02 0.35 -14.32 16 20 C 0.18 4.15 7.27 87.49 0.64 4.79 16 21 N -0.47 -10.77 10.05 -180.97 -1.82 -12.59 16 22 C 0.06 1.22 6.94 39.92 0.28 1.49 16 23 C -0.07 -1.04 10.05 22.52 0.23 -0.81 16 24 C -0.10 -0.84 9.93 21.90 0.22 -0.62 16 25 C -0.09 -0.74 10.05 22.27 0.22 -0.52 16 26 C -0.09 -1.16 10.07 22.41 0.23 -0.94 16 27 C -0.19 -3.70 6.53 22.96 0.15 -3.55 16 28 S 0.04 0.94 22.77 -56.49 -1.29 -0.34 16 29 C -0.02 -0.49 9.75 22.36 0.22 -0.27 16 30 C -0.22 -7.80 9.14 22.13 0.20 -7.60 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 33 H 0.07 2.09 6.17 -2.38 -0.01 2.08 16 34 H 0.04 1.74 7.13 -2.39 -0.02 1.73 16 35 H 0.04 1.74 5.60 -2.39 -0.01 1.73 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.13 3.85 6.11 -2.91 -0.02 3.83 16 38 H 0.12 3.33 6.20 -2.91 -0.02 3.31 16 39 H 0.18 2.84 7.73 -2.91 -0.02 2.82 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.17 0.21 8.06 -2.91 -0.02 0.18 16 43 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 45 H 0.12 4.59 6.11 -2.91 -0.02 4.57 16 Total: -1.00 -72.74 399.37 4.63 -68.11 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.99 Total: 16.25 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 6.37 Total: -16.43 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -3.33 Total: -110.36 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.88 Total: 42.78 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -1.29 Total: -0.34 kcal Total: -72.74 4.63 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019074827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.111 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds