Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46751 * 2 1 4 4 H 1.09005 * 109.47323 * 304.99781 * 3 2 1 5 5 O 1.42905 * 109.47173 * 65.00311 * 3 2 1 6 6 C 1.35888 * 116.99566 * 263.80948 * 5 3 2 7 7 C 1.39856 * 119.56120 * 184.62904 * 6 5 3 8 8 C 1.35983 * 120.92417 * 179.97438 * 7 6 5 9 9 C 1.40589 * 119.73744 * 359.97438 * 8 7 6 10 10 C 1.40522 * 121.21750 * 180.02562 * 9 8 7 11 11 C 1.36110 * 119.66871 * 179.97438 * 10 9 8 12 12 C 1.39364 * 120.99302 * 359.97438 * 11 10 9 13 13 C 1.36088 * 120.98656 * 0.02562 * 12 11 10 14 14 C 1.40577 * 119.65479 * 359.97438 * 13 12 11 15 15 C 1.36566 * 119.56901 * 4.35309 * 6 5 3 16 16 C 1.50698 * 109.47159 * 185.00181 * 3 2 1 17 17 O 1.21282 * 120.00468 * 245.00154 * 16 3 2 18 18 N 1.34778 * 120.00189 * 64.99669 * 16 3 2 19 19 C 1.39234 * 120.00242 * 185.10425 * 18 16 3 20 20 C 1.39483 * 119.83070 * 212.91645 * 19 18 16 21 21 C 1.36379 * 120.16656 * 179.72153 * 20 19 18 22 22 C 1.40868 * 119.82827 * 0.56555 * 21 20 19 23 23 C 1.41152 * 120.16502 * 179.67991 * 22 21 20 24 24 H 1.07994 * 119.99987 * 161.51554 * 23 22 21 25 25 C 1.39906 * 119.99910 * 341.51493 * 23 22 21 26 26 N 1.30867 * 119.99861 * 333.99125 * 25 23 22 27 27 Si 1.86793 * 119.99888 * 153.99507 * 25 23 22 28 28 H 1.48503 * 109.47229 * 94.98921 * 27 25 23 29 29 H 1.48495 * 109.47261 * 214.98995 * 27 25 23 30 30 H 1.48503 * 109.47357 * 334.99329 * 27 25 23 31 31 C 1.40870 * 119.67311 * 359.71021 * 22 21 20 32 32 C 1.36382 * 119.82677 * 359.97438 * 31 22 21 33 33 H 1.09004 * 109.47074 * 299.99462 * 1 2 3 34 34 H 1.08994 * 109.47467 * 59.99878 * 1 2 3 35 35 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.46766 * 240.00503 * 2 1 3 37 37 H 1.08995 * 109.47001 * 119.99866 * 2 1 3 38 38 H 1.07997 * 119.53572 * 359.97438 * 7 6 5 39 39 H 1.08007 * 120.12981 * 179.97438 * 8 7 6 40 40 H 1.08002 * 120.17079 * 359.95206 * 10 9 8 41 41 H 1.08002 * 119.49989 * 180.02562 * 11 10 9 42 42 H 1.08005 * 119.51023 * 180.02562 * 12 11 10 43 43 H 1.07999 * 120.17820 * 179.97438 * 13 12 11 44 44 H 1.07995 * 120.19293 * 0.02562 * 15 6 5 45 45 H 0.97005 * 119.99997 * 5.10455 * 18 16 3 46 46 H 1.07996 * 119.91694 * 359.97438 * 20 19 18 47 47 H 1.07997 * 120.08510 * 180.25400 * 21 20 19 48 48 H 0.97006 * 120.00200 * 180.02562 * 26 25 23 49 49 H 1.07995 * 120.09247 * 179.97438 * 31 22 21 50 50 H 1.07998 * 119.91279 * 179.97438 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 8 1.6619 2.0814 1.2211 6 6 0.5285 2.8307 1.2001 7 6 0.1609 3.5579 2.3367 8 6 -0.9672 4.3172 2.3460 9 6 -1.7781 4.3753 1.1990 10 6 -2.9501 5.1502 1.1742 11 6 -3.7116 5.1841 0.0466 12 6 -3.3468 4.4612 -1.0877 13 6 -2.2189 3.6999 -1.1006 14 6 -1.4070 3.6400 0.0455 15 6 -0.2337 2.8683 0.0675 16 6 3.5418 1.4445 -0.1239 17 8 4.2250 1.8612 0.7874 18 7 4.1259 0.9829 -1.2474 19 6 5.5129 0.8852 -1.3214 20 6 6.1587 1.0891 -2.5407 21 6 7.5174 1.0006 -2.6198 22 6 8.2676 0.6908 -1.4685 23 6 9.6735 0.5909 -1.5437 24 1 10.2681 0.6525 -0.6443 25 6 10.2968 0.4120 -2.7834 26 7 9.6466 -0.1564 -3.7666 27 14 12.0569 0.9845 -3.0351 28 1 12.9849 -0.1514 -2.8030 29 1 12.2217 1.4823 -4.4244 30 1 12.3637 2.0776 -2.0779 31 6 7.6077 0.4807 -0.2418 32 6 6.2489 0.5789 -0.1769 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 0.7817 3.5159 3.2195 39 1 -1.2392 4.8733 3.2311 40 1 -3.2455 5.7158 2.0456 41 1 -4.6116 5.7809 0.0303 42 1 -3.9686 4.5058 -1.9697 43 1 -1.9488 3.1446 -1.9866 44 1 0.0626 2.3056 -0.8054 45 1 3.5801 0.7188 -2.0045 46 1 5.5818 1.3215 -3.4236 47 1 8.0164 1.1627 -3.5638 48 1 10.0788 -0.2808 -4.6261 49 1 8.1761 0.2424 0.6450 50 1 5.7415 0.4176 0.7627 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020038276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = -4.297746 kcal Electronic energy + Delta-G solvation = -32419.370000 eV Core-core repulsion = 28148.444692 eV Total energy + Delta-G solvation = -4270.925308 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.162 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.19015 -39.99291 -38.84190 -37.19677 -35.91311 -34.58119 -33.89959 -32.94976 -32.78967 -30.23026 -29.65523 -29.38980 -29.00019 -27.51048 -24.89206 -23.91067 -23.00540 -22.66694 -22.13646 -21.40525 -20.70757 -19.62562 -18.73883 -17.69467 -17.51894 -17.36332 -16.68902 -16.21079 -15.94642 -15.30565 -15.19048 -15.12550 -14.87714 -14.51058 -14.14133 -13.98662 -13.89265 -13.64303 -13.43327 -13.38257 -13.03835 -12.95419 -12.73594 -12.41932 -12.26713 -12.15784 -12.05577 -11.90933 -11.70885 -11.43827 -11.37522 -11.30963 -11.13687 -10.99264 -10.85299 -10.63847 -10.56034 -10.16978 -10.07396 -9.74406 -9.49501 -9.14539 -8.72791 -8.57340 -7.93225 -7.57713 -7.12069 -6.89355 -4.30940 0.28446 0.81428 1.79922 2.45153 2.66752 2.79599 2.90982 3.03077 3.07440 3.09935 3.32130 3.77414 3.86919 3.87837 4.30412 4.44573 4.50213 4.57054 4.60653 4.68525 4.77067 4.81262 4.86917 4.98458 5.01487 5.06201 5.16998 5.22787 5.39463 5.42846 5.60125 5.67134 5.68164 5.73214 5.80399 5.86593 5.95322 6.00178 6.10311 6.16072 6.26049 6.31265 6.38997 6.43223 6.67247 6.72531 6.87677 6.97382 7.12244 7.19715 7.26273 7.54722 7.66355 7.85669 7.99325 8.22736 8.23308 8.53030 8.67482 8.82525 8.95673 10.02667 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.001623 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.953911 B =17251.061970 C =17403.818074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.099 0.901 5 O -0.279 6.279 6 C 0.147 3.853 7 C -0.130 4.130 8 C -0.070 4.070 9 C -0.086 4.086 10 C -0.092 4.092 11 C -0.134 4.134 12 C -0.108 4.108 13 C -0.118 4.118 14 C -0.010 4.010 15 C -0.223 4.223 16 C 0.497 3.503 17 O -0.509 6.509 18 N -0.642 5.642 19 C -0.019 4.019 20 C -0.106 4.106 21 C -0.166 4.166 22 C 0.107 3.893 23 C -0.455 4.455 24 H 0.081 0.919 25 C 0.080 3.920 26 N -0.778 5.778 27 Si 0.903 3.097 28 H -0.269 1.269 29 H -0.274 1.274 30 H -0.258 1.258 31 C -0.222 4.222 32 C -0.070 4.070 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.138 0.862 45 H 0.394 0.606 46 H 0.090 0.910 47 H 0.120 0.880 48 H 0.282 0.718 49 H 0.095 0.905 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.837 5.224 3.089 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.116 0.884 5 O -0.190 6.190 6 C 0.101 3.899 7 C -0.148 4.148 8 C -0.088 4.088 9 C -0.086 4.086 10 C -0.110 4.110 11 C -0.152 4.152 12 C -0.126 4.126 13 C -0.136 4.136 14 C -0.010 4.010 15 C -0.241 4.241 16 C 0.281 3.719 17 O -0.384 6.384 18 N -0.286 5.286 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.186 4.186 22 C 0.104 3.896 23 C -0.483 4.483 24 H 0.099 0.901 25 C -0.140 4.140 26 N -0.402 5.402 27 Si 0.727 3.273 28 H -0.194 1.194 29 H -0.199 1.199 30 H -0.182 1.182 31 C -0.242 4.242 32 C -0.090 4.090 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.156 0.844 45 H 0.228 0.772 46 H 0.108 0.892 47 H 0.138 0.862 48 H 0.093 0.907 49 H 0.113 0.887 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.189 5.379 3.695 25.054 hybrid contribution 0.424 0.021 -0.903 0.997 sum -23.766 5.399 2.792 24.531 Atomic orbital electron populations 1.21997 0.94558 1.02463 1.02324 1.22002 0.97076 0.94030 1.04559 1.22419 0.94037 0.95096 0.87761 0.88355 1.86232 1.38826 1.60629 1.33346 1.18788 0.86118 0.90746 0.94279 1.20271 0.98479 0.98312 0.97761 1.20890 0.93273 0.97352 0.97322 1.18068 0.96646 0.99764 0.94134 1.20996 0.93753 0.97862 0.98433 1.20788 1.00325 1.00591 0.93533 1.20843 0.96826 0.96662 0.98253 1.20983 0.95182 1.00122 0.97316 1.17767 0.94163 0.95557 0.93509 1.21159 0.97597 1.06283 0.99073 1.20051 0.88501 0.79325 0.83990 1.90731 1.64175 1.44617 1.38878 1.42821 1.06778 1.63346 1.15692 1.17052 0.80132 1.18172 0.95702 1.20165 0.95180 1.02797 0.94431 1.20859 0.91833 1.06196 0.99734 1.17650 0.93244 0.87737 0.90947 1.19589 0.92085 1.42986 0.93675 0.90121 1.25974 1.00583 0.91942 0.95487 1.69891 1.38990 1.27506 1.03768 0.86378 0.81878 0.80300 0.78741 1.19450 1.19893 1.18179 1.20582 0.93132 1.12515 0.98004 1.20246 0.94130 0.98548 0.96035 0.91989 0.92291 0.91933 0.89518 0.89877 0.84653 0.84696 0.85700 0.86183 0.86123 0.85728 0.84419 0.77239 0.89227 0.86196 0.90660 0.88707 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.41 37.16 0.31 -1.04 16 2 C -0.14 -1.45 5.61 -26.73 -0.15 -1.61 16 3 C 0.07 0.87 2.56 -27.88 -0.07 0.80 16 4 H 0.10 1.05 5.51 -51.93 -0.29 0.77 16 5 O -0.28 -4.07 9.16 -39.25 -0.36 -4.43 16 6 C 0.15 1.82 5.56 -39.58 -0.22 1.60 16 7 C -0.13 -1.44 9.88 -39.79 -0.39 -1.83 16 8 C -0.07 -0.66 9.76 -39.50 -0.39 -1.04 16 9 C -0.09 -0.86 5.74 -106.81 -0.61 -1.47 16 10 C -0.09 -0.75 9.77 -39.49 -0.39 -1.14 16 11 C -0.13 -1.01 9.95 -39.93 -0.40 -1.41 16 12 C -0.11 -0.84 9.95 -39.94 -0.40 -1.23 16 13 C -0.12 -1.04 9.77 -39.47 -0.39 -1.43 16 14 C -0.01 -0.10 5.74 -106.84 -0.61 -0.72 16 15 C -0.22 -2.41 6.79 -39.35 -0.27 -2.68 16 16 C 0.50 8.78 6.91 -10.99 -0.08 8.70 16 17 O -0.51 -11.45 14.14 -14.30 -0.20 -11.65 16 18 N -0.64 -11.09 5.19 -9.74 -0.05 -11.14 16 19 C -0.02 -0.42 6.30 -83.57 -0.53 -0.94 16 20 C -0.11 -2.39 9.89 -39.79 -0.39 -2.78 16 21 C -0.17 -4.23 8.71 -39.26 -0.34 -4.58 16 22 C 0.11 2.86 5.62 -106.80 -0.60 2.26 16 23 C -0.46 -11.97 9.01 -37.85 -0.34 -12.31 16 24 H 0.08 2.05 7.97 -52.49 -0.42 1.63 16 25 C 0.08 1.96 5.00 -17.34 -0.09 1.88 16 26 N -0.78 -19.37 11.08 55.55 0.62 -18.76 16 27 Si 0.90 18.17 29.63 -169.99 -5.04 13.13 16 28 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 29 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 30 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 31 C -0.22 -5.67 9.74 -39.26 -0.38 -6.05 16 32 C -0.07 -1.69 8.57 -39.79 -0.34 -2.03 16 33 H 0.06 0.61 6.29 -51.93 -0.33 0.29 16 34 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.79 7.93 -51.93 -0.41 0.38 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.14 1.28 4.03 -52.49 -0.21 1.07 16 45 H 0.39 5.19 8.69 -40.82 -0.35 4.84 16 46 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.12 3.10 6.03 -52.49 -0.32 2.79 16 48 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 49 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 50 H 0.10 2.43 6.37 -52.49 -0.33 2.10 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -31.78 408.18 -12.30 -44.08 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.36 Total: 11.67 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -7.06 Total: -29.05 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.56 Total: -29.90 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.56 Total: -16.08 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.04 Total: 13.13 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.78 -12.30 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020038276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.781 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds