Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46751 * 2 1 4 4 H 1.09005 * 109.47323 * 304.99781 * 3 2 1 5 5 O 1.42905 * 109.47173 * 65.00311 * 3 2 1 6 6 C 1.35888 * 116.99566 * 263.80948 * 5 3 2 7 7 C 1.39856 * 119.56120 * 184.62904 * 6 5 3 8 8 C 1.35983 * 120.92417 * 179.97438 * 7 6 5 9 9 C 1.40589 * 119.73744 * 359.97438 * 8 7 6 10 10 C 1.40522 * 121.21750 * 180.02562 * 9 8 7 11 11 C 1.36110 * 119.66871 * 179.97438 * 10 9 8 12 12 C 1.39364 * 120.99302 * 359.97438 * 11 10 9 13 13 C 1.36088 * 120.98656 * 0.02562 * 12 11 10 14 14 C 1.40577 * 119.65479 * 359.97438 * 13 12 11 15 15 C 1.36566 * 119.56901 * 4.35309 * 6 5 3 16 16 C 1.50698 * 109.47159 * 185.00181 * 3 2 1 17 17 O 1.21282 * 120.00468 * 245.00154 * 16 3 2 18 18 N 1.34778 * 120.00189 * 64.99669 * 16 3 2 19 19 C 1.39234 * 120.00242 * 185.10425 * 18 16 3 20 20 C 1.39483 * 119.83070 * 212.91645 * 19 18 16 21 21 C 1.36379 * 120.16656 * 179.72153 * 20 19 18 22 22 C 1.40868 * 119.82827 * 0.56555 * 21 20 19 23 23 C 1.41152 * 120.16502 * 179.67991 * 22 21 20 24 24 H 1.07994 * 119.99987 * 161.51554 * 23 22 21 25 25 C 1.39906 * 119.99910 * 341.51493 * 23 22 21 26 26 N 1.30867 * 119.99861 * 333.99125 * 25 23 22 27 27 Si 1.86793 * 119.99888 * 153.99507 * 25 23 22 28 28 H 1.48503 * 109.47229 * 94.98921 * 27 25 23 29 29 H 1.48495 * 109.47261 * 214.98995 * 27 25 23 30 30 H 1.48503 * 109.47357 * 334.99329 * 27 25 23 31 31 C 1.40870 * 119.67311 * 359.71021 * 22 21 20 32 32 C 1.36382 * 119.82677 * 359.97438 * 31 22 21 33 33 H 1.09004 * 109.47074 * 299.99462 * 1 2 3 34 34 H 1.08994 * 109.47467 * 59.99878 * 1 2 3 35 35 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.46766 * 240.00503 * 2 1 3 37 37 H 1.08995 * 109.47001 * 119.99866 * 2 1 3 38 38 H 1.07997 * 119.53572 * 359.97438 * 7 6 5 39 39 H 1.08007 * 120.12981 * 179.97438 * 8 7 6 40 40 H 1.08002 * 120.17079 * 359.95206 * 10 9 8 41 41 H 1.08002 * 119.49989 * 180.02562 * 11 10 9 42 42 H 1.08005 * 119.51023 * 180.02562 * 12 11 10 43 43 H 1.07999 * 120.17820 * 179.97438 * 13 12 11 44 44 H 1.07995 * 120.19293 * 0.02562 * 15 6 5 45 45 H 0.97005 * 119.99997 * 5.10455 * 18 16 3 46 46 H 1.07996 * 119.91694 * 359.97438 * 20 19 18 47 47 H 1.07997 * 120.08510 * 180.25400 * 21 20 19 48 48 H 0.97006 * 120.00200 * 180.02562 * 26 25 23 49 49 H 1.07995 * 120.09247 * 179.97438 * 31 22 21 50 50 H 1.07998 * 119.91279 * 179.97438 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 8 1.6619 2.0814 1.2211 6 6 0.5285 2.8307 1.2001 7 6 0.1609 3.5579 2.3367 8 6 -0.9672 4.3172 2.3460 9 6 -1.7781 4.3753 1.1990 10 6 -2.9501 5.1502 1.1742 11 6 -3.7116 5.1841 0.0466 12 6 -3.3468 4.4612 -1.0877 13 6 -2.2189 3.6999 -1.1006 14 6 -1.4070 3.6400 0.0455 15 6 -0.2337 2.8683 0.0675 16 6 3.5418 1.4445 -0.1239 17 8 4.2250 1.8612 0.7874 18 7 4.1259 0.9829 -1.2474 19 6 5.5129 0.8852 -1.3214 20 6 6.1587 1.0891 -2.5407 21 6 7.5174 1.0006 -2.6198 22 6 8.2676 0.6908 -1.4685 23 6 9.6735 0.5909 -1.5437 24 1 10.2681 0.6525 -0.6443 25 6 10.2968 0.4120 -2.7834 26 7 9.6466 -0.1564 -3.7666 27 14 12.0569 0.9845 -3.0351 28 1 12.9849 -0.1514 -2.8030 29 1 12.2217 1.4823 -4.4244 30 1 12.3637 2.0776 -2.0779 31 6 7.6077 0.4807 -0.2418 32 6 6.2489 0.5789 -0.1769 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 0.7817 3.5159 3.2195 39 1 -1.2392 4.8733 3.2311 40 1 -3.2455 5.7158 2.0456 41 1 -4.6116 5.7809 0.0303 42 1 -3.9686 4.5058 -1.9697 43 1 -1.9488 3.1446 -1.9866 44 1 0.0626 2.3056 -0.8054 45 1 3.5801 0.7188 -2.0045 46 1 5.5818 1.3215 -3.4236 47 1 8.0164 1.1627 -3.5638 48 1 10.0788 -0.2808 -4.6261 49 1 8.1761 0.2424 0.6450 50 1 5.7415 0.4176 0.7627 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020038276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = -18.977182 kcal Electronic energy + Delta-G solvation = -32420.006548 eV Core-core repulsion = 28148.444692 eV Total energy + Delta-G solvation = -4271.561856 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.162 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.13009 -41.16980 -39.98208 -38.89582 -36.69275 -36.27100 -35.13384 -34.36556 -33.51788 -31.50693 -31.08011 -30.86482 -29.91747 -28.64977 -26.59457 -24.67904 -23.77605 -23.68149 -23.30906 -22.88167 -22.22887 -21.05460 -19.62895 -19.34699 -18.86299 -18.25677 -17.78320 -17.53856 -17.02569 -16.91769 -16.20192 -15.96888 -15.83731 -15.76480 -15.66494 -15.18057 -14.91547 -14.67418 -14.50515 -14.33684 -14.14486 -14.02202 -14.00887 -13.74122 -13.69383 -13.41978 -13.26582 -13.01692 -12.92579 -12.79980 -12.71456 -12.42401 -12.36539 -12.01165 -12.00433 -11.91780 -11.61295 -11.57370 -11.41124 -11.24552 -10.86078 -10.70385 -10.46668 -9.50294 -9.30446 -8.98167 -8.72881 -8.65959 -6.26160 -0.39379 0.09275 0.74487 1.11782 1.12124 1.35709 1.40104 1.52847 1.60400 1.71338 2.06623 2.19278 2.57535 2.66255 3.18477 3.47795 3.55437 3.64733 3.70453 3.78307 3.90690 4.08459 4.09157 4.13807 4.26896 4.33975 4.37404 4.39338 4.43294 4.46650 4.56374 4.69994 4.73300 4.89532 4.93135 4.97564 5.02222 5.06852 5.10898 5.12163 5.15755 5.26604 5.28464 5.31098 5.38236 5.40409 5.61642 5.65166 5.65537 5.71867 5.84890 5.99501 6.05444 6.07777 6.31741 6.34949 6.60435 6.65736 6.88383 6.95578 7.29375 8.22115 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.001623 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.953911 B =17251.061970 C =17403.818074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.078 3.922 4 H 0.127 0.873 5 O -0.308 6.308 6 C 0.120 3.880 7 C -0.155 4.155 8 C -0.063 4.063 9 C -0.103 4.103 10 C -0.101 4.101 11 C -0.135 4.135 12 C -0.108 4.108 13 C -0.131 4.131 14 C -0.030 4.030 15 C -0.217 4.217 16 C 0.495 3.505 17 O -0.563 6.563 18 N -0.631 5.631 19 C -0.005 4.005 20 C -0.102 4.102 21 C -0.185 4.185 22 C 0.077 3.923 23 C -0.495 4.495 24 H 0.073 0.927 25 C 0.044 3.956 26 N -0.803 5.803 27 Si 0.978 3.022 28 H -0.260 1.260 29 H -0.260 1.260 30 H -0.263 1.263 31 C -0.244 4.244 32 C -0.082 4.082 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.152 0.848 45 H 0.419 0.581 46 H 0.127 0.873 47 H 0.113 0.887 48 H 0.294 0.706 49 H 0.091 0.909 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.766 6.112 1.049 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.018 3.982 4 H 0.144 0.856 5 O -0.221 6.221 6 C 0.075 3.925 7 C -0.173 4.173 8 C -0.080 4.080 9 C -0.103 4.103 10 C -0.118 4.118 11 C -0.153 4.153 12 C -0.126 4.126 13 C -0.149 4.149 14 C -0.030 4.030 15 C -0.236 4.236 16 C 0.283 3.717 17 O -0.441 6.441 18 N -0.277 5.277 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.205 4.205 22 C 0.075 3.925 23 C -0.523 4.523 24 H 0.091 0.909 25 C -0.174 4.174 26 N -0.427 5.427 27 Si 0.798 3.202 28 H -0.184 1.184 29 H -0.184 1.184 30 H -0.187 1.187 31 C -0.264 4.264 32 C -0.102 4.102 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.179 0.821 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.169 0.831 45 H 0.256 0.744 46 H 0.145 0.855 47 H 0.131 0.869 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.179 6.249 1.628 27.935 hybrid contribution 1.068 -0.188 -0.239 1.111 sum -26.110 6.061 1.389 26.841 Atomic orbital electron populations 1.21947 0.92771 1.03415 1.02490 1.22019 0.98488 0.92056 1.04599 1.22403 0.90113 0.97067 0.88620 0.85567 1.86187 1.40269 1.61584 1.34065 1.19000 0.86132 0.91767 0.95560 1.20419 0.99601 0.99579 0.97747 1.21184 0.92228 0.96419 0.98206 1.18389 0.97517 1.00237 0.94199 1.21299 0.93109 0.97714 0.99725 1.21188 1.00870 1.00145 0.93079 1.21227 0.96518 0.95603 0.99212 1.21234 0.95448 1.00812 0.97367 1.18037 0.94461 0.95947 0.94530 1.21272 0.97446 1.06093 0.98745 1.20973 0.90598 0.77431 0.82732 1.90710 1.65960 1.46766 1.40638 1.42682 1.05052 1.63160 1.16825 1.17100 0.82406 1.15550 0.94744 1.20451 0.94507 1.01376 0.95830 1.20900 0.93126 1.07437 0.99044 1.17974 0.94039 0.88789 0.91745 1.19790 0.92374 1.45444 0.94698 0.90851 1.26753 1.04850 0.91257 0.94519 1.69890 1.40938 1.27453 1.04410 0.85266 0.76327 0.79651 0.78966 1.18447 1.18371 1.18735 1.20693 0.93954 1.13796 0.97969 1.20342 0.93888 0.99140 0.96841 0.93470 0.90455 0.90560 0.87586 0.91733 0.85058 0.82122 0.83505 0.83654 0.83685 0.84091 0.83110 0.74362 0.85505 0.86949 0.89513 0.89101 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.41 71.98 0.61 -1.68 16 2 C -0.13 -2.62 5.61 30.60 0.17 -2.45 16 3 C 0.08 1.95 2.56 29.85 0.08 2.03 16 4 H 0.13 2.42 5.51 -2.38 -0.01 2.41 16 5 O -0.31 -9.22 9.16 -73.30 -0.67 -9.89 16 6 C 0.12 3.01 5.56 22.27 0.12 3.14 16 7 C -0.16 -3.53 9.88 22.14 0.22 -3.31 16 8 C -0.06 -1.13 9.76 22.32 0.22 -0.91 16 9 C -0.10 -1.91 5.74 -21.28 -0.12 -2.03 16 10 C -0.10 -1.38 9.77 22.33 0.22 -1.16 16 11 C -0.14 -1.58 9.95 22.05 0.22 -1.36 16 12 C -0.11 -1.31 9.95 22.04 0.22 -1.09 16 13 C -0.13 -1.95 9.77 22.34 0.22 -1.74 16 14 C -0.03 -0.57 5.74 -21.30 -0.12 -0.69 16 15 C -0.22 -4.44 6.79 22.42 0.15 -4.29 16 16 C 0.50 17.48 6.91 87.66 0.61 18.09 16 17 O -0.56 -26.18 14.14 15.95 0.23 -25.96 16 18 N -0.63 -21.05 5.19 -303.12 -1.57 -22.62 16 19 C 0.00 -0.22 6.30 38.56 0.24 0.02 16 20 C -0.10 -4.54 9.89 22.14 0.22 -4.32 16 21 C -0.19 -9.61 8.71 22.48 0.20 -9.42 16 22 C 0.08 4.30 5.62 -21.28 -0.12 4.18 16 23 C -0.50 -27.17 9.01 23.39 0.21 -26.96 16 24 H 0.07 3.96 7.97 -2.91 -0.02 3.93 16 25 C 0.04 2.20 5.00 85.24 0.43 2.63 16 26 N -0.80 -40.37 11.08 21.82 0.24 -40.13 16 27 Si 0.98 37.50 29.63 68.60 2.03 39.53 16 28 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 29 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 30 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 31 C -0.24 -13.13 9.74 22.48 0.22 -12.91 16 32 C -0.08 -4.12 8.57 22.14 0.19 -3.93 16 33 H 0.05 0.89 6.29 -2.39 -0.02 0.87 16 34 H 0.08 0.90 6.56 -2.39 -0.02 0.88 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 1.65 7.93 -2.39 -0.02 1.63 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 42 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.15 2.45 4.03 -2.91 -0.01 2.43 16 45 H 0.42 9.88 8.69 -92.70 -0.81 9.07 16 46 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 47 H 0.11 5.93 6.03 -2.91 -0.02 5.91 16 48 H 0.29 13.09 8.30 -92.70 -0.77 12.32 16 49 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 50 H 0.10 4.90 6.37 -2.91 -0.02 4.88 16 Total: -1.00 -73.49 408.18 4.83 -68.66 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.19 Total: 38.55 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 4.39 Total: -48.15 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -1.33 Total: -62.75 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.45 Total: -35.85 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -73.49 4.83 -68.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020038276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.688 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds