Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.08999 * 109.47452 * 54.99653 * 3 2 1 5 5 O 1.42907 * 109.47025 * 294.99389 * 3 2 1 6 6 C 1.35884 * 116.99498 * 98.29231 * 5 3 2 7 7 C 1.39851 * 119.56704 * 176.00899 * 6 5 3 8 8 C 1.35981 * 120.93393 * 179.71329 * 7 6 5 9 9 C 1.40596 * 119.73062 * 0.55355 * 8 7 6 10 10 C 1.40521 * 121.21995 * 179.72260 * 9 8 7 11 11 C 1.36104 * 119.67311 * 180.02562 * 10 9 8 12 12 C 1.39372 * 120.99135 * 359.95814 * 11 10 9 13 13 C 1.36085 * 120.98508 * 0.02562 * 12 11 10 14 14 C 1.40579 * 119.65518 * 359.97438 * 13 12 11 15 15 C 1.36576 * 119.57003 * 356.28165 * 6 5 3 16 16 C 1.50699 * 109.46958 * 174.99984 * 3 2 1 17 17 O 1.21287 * 119.99886 * 119.99805 * 16 3 2 18 18 N 1.34776 * 119.99954 * 299.99633 * 16 3 2 19 19 C 1.39238 * 120.00016 * 175.73479 * 18 16 3 20 20 C 1.39478 * 119.83284 * 215.97833 * 19 18 16 21 21 C 1.36377 * 120.16648 * 179.71736 * 20 19 18 22 22 C 1.40869 * 119.82922 * 0.57484 * 21 20 19 23 23 C 1.41155 * 120.16310 * 179.67955 * 22 21 20 24 24 H 1.08006 * 119.99958 * 165.11784 * 23 22 21 25 25 C 1.39903 * 119.99927 * 345.11139 * 23 22 21 26 26 N 1.30867 * 120.00482 * 324.05759 * 25 23 22 27 27 Si 1.86808 * 119.99779 * 144.05798 * 25 23 22 28 28 H 1.48492 * 109.47071 * 94.99366 * 27 25 23 29 29 H 1.48497 * 109.46812 * 214.99624 * 27 25 23 30 30 H 1.48498 * 109.46912 * 334.99287 * 27 25 23 31 31 C 1.40868 * 119.67410 * 359.69451 * 22 21 20 32 32 C 1.36379 * 119.82512 * 0.02562 * 31 22 21 33 33 H 1.09000 * 109.47326 * 300.00674 * 1 2 3 34 34 H 1.08998 * 109.47133 * 60.00186 * 1 2 3 35 35 H 1.08994 * 109.47182 * 180.02562 * 1 2 3 36 36 H 1.08997 * 109.47512 * 239.99806 * 2 1 3 37 37 H 1.08999 * 109.46664 * 119.99566 * 2 1 3 38 38 H 1.08000 * 119.53319 * 359.97438 * 7 6 5 39 39 H 1.07998 * 120.13784 * 180.27785 * 8 7 6 40 40 H 1.08002 * 120.16219 * 0.05768 * 10 9 8 41 41 H 1.08000 * 119.50008 * 179.97438 * 11 10 9 42 42 H 1.08001 * 119.50830 * 180.02562 * 12 11 10 43 43 H 1.07994 * 120.17502 * 180.02562 * 13 12 11 44 44 H 1.07994 * 120.18715 * 359.97438 * 15 6 5 45 45 H 0.96999 * 120.00050 * 355.45929 * 18 16 3 46 46 H 1.07999 * 119.91687 * 359.97438 * 20 19 18 47 47 H 1.08009 * 120.08209 * 180.26785 * 21 20 19 48 48 H 0.96996 * 120.00340 * 180.02562 * 26 25 23 49 49 H 1.07995 * 120.09283 * 179.97438 * 31 22 21 50 50 H 1.08000 * 119.91738 * 179.97438 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6620 2.0814 -1.2212 6 6 0.5530 2.8661 -1.1892 7 6 0.1820 3.5832 -2.3311 8 6 -0.9255 4.3722 -2.3318 9 6 -1.7051 4.4806 -1.1669 10 6 -2.8523 5.2913 -1.1310 11 6 -3.5838 5.3735 0.0138 12 6 -3.2132 4.6639 1.1547 13 6 -2.1089 3.8687 1.1572 14 6 -1.3283 3.7586 -0.0068 15 6 -0.1815 2.9485 -0.0408 16 6 3.5418 1.4444 0.1238 17 8 4.2216 1.9436 -0.7478 18 7 4.1297 0.8913 1.2032 19 6 5.5179 0.8132 1.2764 20 6 6.1201 -0.2945 1.8729 21 6 7.4793 -0.3807 1.9431 22 6 8.2752 0.6584 1.4223 23 6 9.6825 0.5796 1.4973 24 1 10.2930 1.2393 0.8984 25 6 10.2866 -0.3528 2.3476 26 7 9.7404 -0.6351 3.5028 27 14 11.8729 -1.1950 1.8338 28 1 13.0307 -0.4578 2.4006 29 1 11.8788 -2.5909 2.3404 30 1 11.9702 -1.2057 0.3521 31 6 7.6596 1.7766 0.8265 32 6 6.2993 1.8460 0.7584 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 1.8934 -0.5138 -0.8899 37 1 1.8932 -0.5138 0.8900 38 1 0.7813 3.5061 -3.2263 39 1 -1.2026 4.9170 -3.2223 40 1 -3.1524 5.8460 -2.0078 41 1 -4.4647 5.9978 0.0383 42 1 -3.8114 4.7464 2.0501 43 1 -1.8340 3.3244 2.0485 44 1 0.1173 2.3931 0.8359 45 1 3.5857 0.5512 1.9308 46 1 5.5085 -1.0880 2.2763 47 1 7.9443 -1.2412 2.4014 48 1 10.1594 -1.2813 4.0925 49 1 8.2632 2.5773 0.4254 50 1 5.8258 2.7028 0.3023 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020038280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = -4.828296 kcal Electronic energy + Delta-G solvation = -32412.663545 eV Core-core repulsion = 28141.715231 eV Total energy + Delta-G solvation = -4270.948315 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.162 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.16787 -39.97786 -38.81791 -37.17643 -35.91104 -34.58760 -33.90440 -32.94917 -32.80515 -30.22842 -29.63579 -29.39009 -29.01828 -27.53589 -24.88285 -23.87628 -22.99589 -22.65791 -22.15264 -21.33892 -20.71562 -19.67358 -18.74363 -17.69835 -17.51153 -17.38817 -16.69656 -16.21824 -15.85508 -15.30883 -15.18660 -15.07198 -14.86664 -14.46358 -14.22241 -14.01816 -13.87169 -13.65720 -13.43124 -13.37798 -13.07405 -12.95327 -12.74981 -12.44749 -12.22364 -12.17090 -12.07690 -11.96026 -11.70100 -11.38989 -11.37327 -11.29497 -11.16632 -10.99519 -10.85589 -10.62555 -10.57100 -10.20662 -10.08249 -9.74735 -9.46131 -9.05626 -8.69392 -8.56564 -7.93028 -7.56911 -7.23924 -6.97687 -4.29264 0.28987 0.82134 1.80452 2.51562 2.65607 2.77840 2.90591 3.01719 3.07958 3.09769 3.32461 3.78705 3.84069 3.88601 4.30646 4.40515 4.46219 4.57349 4.60332 4.69346 4.77973 4.82384 4.86878 4.99777 5.02280 5.06515 5.17664 5.23993 5.39709 5.43534 5.60604 5.66264 5.67938 5.73532 5.81005 5.87056 5.95752 6.00548 6.10905 6.16561 6.26619 6.31823 6.42268 6.43858 6.67954 6.73932 6.91144 6.93902 7.11309 7.20395 7.27584 7.54228 7.65740 7.87180 7.99617 8.21717 8.24363 8.51058 8.69255 8.80305 8.96808 9.91123 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.001614 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.105973 B =17342.308981 C =17542.457283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.066 3.934 4 H 0.101 0.899 5 O -0.278 6.278 6 C 0.148 3.852 7 C -0.130 4.130 8 C -0.070 4.070 9 C -0.086 4.086 10 C -0.092 4.092 11 C -0.134 4.134 12 C -0.108 4.108 13 C -0.118 4.118 14 C -0.009 4.009 15 C -0.223 4.223 16 C 0.496 3.504 17 O -0.511 6.511 18 N -0.641 5.641 19 C -0.031 4.031 20 C -0.098 4.098 21 C -0.180 4.180 22 C 0.110 3.890 23 C -0.460 4.460 24 H 0.083 0.917 25 C 0.090 3.910 26 N -0.759 5.759 27 Si 0.896 3.104 28 H -0.268 1.268 29 H -0.273 1.273 30 H -0.256 1.256 31 C -0.229 4.229 32 C -0.064 4.064 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.393 0.607 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.285 0.715 49 H 0.094 0.906 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.656 4.504 -3.246 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.006 3.994 4 H 0.118 0.882 5 O -0.190 6.190 6 C 0.102 3.898 7 C -0.148 4.148 8 C -0.088 4.088 9 C -0.086 4.086 10 C -0.110 4.110 11 C -0.152 4.152 12 C -0.126 4.126 13 C -0.136 4.136 14 C -0.009 4.009 15 C -0.242 4.242 16 C 0.281 3.719 17 O -0.386 6.386 18 N -0.285 5.285 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.199 4.199 22 C 0.107 3.893 23 C -0.487 4.487 24 H 0.101 0.899 25 C -0.133 4.133 26 N -0.381 5.381 27 Si 0.718 3.282 28 H -0.193 1.193 29 H -0.198 1.198 30 H -0.179 1.179 31 C -0.249 4.249 32 C -0.083 4.083 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.227 0.773 46 H 0.107 0.893 47 H 0.130 0.870 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.021 4.690 -3.830 24.772 hybrid contribution 0.373 -0.659 0.565 0.944 sum -23.648 4.031 -3.265 24.211 Atomic orbital electron populations 1.21941 0.94576 1.02433 1.02312 1.21984 0.97049 0.94018 1.04482 1.22447 0.94055 0.95083 0.87863 0.88181 1.86233 1.40884 1.58851 1.33029 1.18789 0.86443 0.90371 0.94219 1.20266 0.98580 0.98294 0.97699 1.20891 0.93481 0.97178 0.97246 1.18068 0.97009 0.99651 0.93915 1.20993 0.94013 0.97656 0.98373 1.20788 1.00438 1.00669 0.93355 1.20844 0.96867 0.96581 0.98282 1.20983 0.95523 0.99933 0.97175 1.17764 0.94310 0.95433 0.93423 1.21107 0.98339 1.05996 0.98716 1.20093 0.88515 0.80630 0.82691 1.90722 1.64291 1.43531 1.40008 1.42769 1.06675 1.60113 1.18983 1.16996 0.79807 0.99218 1.16231 1.20131 0.95243 0.94965 1.01422 1.20683 0.91683 1.00299 1.07277 1.17601 0.93152 0.89883 0.88658 1.19559 0.92002 1.16420 1.20740 0.89877 1.26005 0.99223 0.95197 0.92887 1.69973 1.38563 1.24433 1.05164 0.86512 0.81393 0.79077 0.81173 1.19347 1.19785 1.17945 1.20532 0.93280 0.99592 1.11502 1.20339 0.93688 0.96225 0.98082 0.92360 0.92063 0.91931 0.89883 0.89594 0.84660 0.84696 0.85701 0.86183 0.86122 0.85726 0.84526 0.77303 0.89302 0.87016 0.90449 0.88785 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.48 37.16 0.32 -1.04 16 2 C -0.14 -1.44 5.59 -26.73 -0.15 -1.59 16 3 C 0.07 0.86 2.55 -27.88 -0.07 0.79 16 4 H 0.10 1.08 5.36 -51.93 -0.28 0.80 16 5 O -0.28 -4.08 9.12 -39.29 -0.36 -4.44 16 6 C 0.15 1.85 5.57 -39.58 -0.22 1.63 16 7 C -0.13 -1.45 9.88 -39.79 -0.39 -1.84 16 8 C -0.07 -0.66 9.76 -39.50 -0.39 -1.04 16 9 C -0.09 -0.87 5.74 -106.81 -0.61 -1.48 16 10 C -0.09 -0.76 9.77 -39.49 -0.39 -1.15 16 11 C -0.13 -1.02 9.95 -39.93 -0.40 -1.42 16 12 C -0.11 -0.84 9.95 -39.93 -0.40 -1.24 16 13 C -0.12 -1.05 9.77 -39.47 -0.39 -1.44 16 14 C -0.01 -0.10 5.74 -106.84 -0.61 -0.71 16 15 C -0.22 -2.44 7.02 -39.35 -0.28 -2.72 16 16 C 0.50 8.82 7.06 -10.99 -0.08 8.74 16 17 O -0.51 -11.52 13.98 -14.36 -0.20 -11.72 16 18 N -0.64 -11.13 5.12 -9.74 -0.05 -11.18 16 19 C -0.03 -0.69 6.29 -83.57 -0.53 -1.21 16 20 C -0.10 -2.20 9.90 -39.79 -0.39 -2.60 16 21 C -0.18 -4.56 8.80 -39.26 -0.35 -4.90 16 22 C 0.11 2.93 5.64 -106.80 -0.60 2.33 16 23 C -0.46 -12.08 8.94 -37.85 -0.34 -12.42 16 24 H 0.08 2.12 8.04 -52.48 -0.42 1.70 16 25 C 0.09 2.19 4.76 -17.34 -0.08 2.11 16 26 N -0.76 -18.72 11.56 55.55 0.64 -18.08 16 27 Si 0.90 17.91 29.68 -169.99 -5.04 12.86 16 28 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 29 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 30 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 31 C -0.23 -5.88 9.74 -39.26 -0.38 -6.26 16 32 C -0.06 -1.55 8.61 -39.79 -0.34 -1.89 16 33 H 0.06 0.43 6.77 -51.93 -0.35 0.08 16 34 H 0.06 0.61 6.48 -51.93 -0.34 0.27 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.77 7.53 -51.93 -0.39 0.38 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.14 1.29 4.23 -52.49 -0.22 1.06 16 45 H 0.39 5.22 8.33 -40.82 -0.34 4.88 16 46 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 47 H 0.11 2.86 6.18 -52.48 -0.32 2.54 16 48 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 49 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 50 H 0.10 2.53 6.30 -52.49 -0.33 2.20 16 LS Contribution 408.53 15.07 6.16 6.16 Total: -1.00 -31.72 408.53 -12.28 -44.00 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.36 Total: 11.76 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -7.06 Total: -29.36 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 0.59 Total: -29.26 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.56 Total: -16.16 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.04 Total: 12.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.72 -12.28 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020038280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.174 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds