Wall clock time and date at job start Tue Mar 31 2020 05:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.08999 * 109.47452 * 54.99653 * 3 2 1 5 5 O 1.42907 * 109.47025 * 294.99389 * 3 2 1 6 6 C 1.35884 * 116.99498 * 98.29231 * 5 3 2 7 7 C 1.39851 * 119.56704 * 176.00899 * 6 5 3 8 8 C 1.35981 * 120.93393 * 179.71329 * 7 6 5 9 9 C 1.40596 * 119.73062 * 0.55355 * 8 7 6 10 10 C 1.40521 * 121.21995 * 179.72260 * 9 8 7 11 11 C 1.36104 * 119.67311 * 180.02562 * 10 9 8 12 12 C 1.39372 * 120.99135 * 359.95814 * 11 10 9 13 13 C 1.36085 * 120.98508 * 0.02562 * 12 11 10 14 14 C 1.40579 * 119.65518 * 359.97438 * 13 12 11 15 15 C 1.36576 * 119.57003 * 356.28165 * 6 5 3 16 16 C 1.50699 * 109.46958 * 174.99984 * 3 2 1 17 17 O 1.21287 * 119.99886 * 119.99805 * 16 3 2 18 18 N 1.34776 * 119.99954 * 299.99633 * 16 3 2 19 19 C 1.39238 * 120.00016 * 175.73479 * 18 16 3 20 20 C 1.39478 * 119.83284 * 215.97833 * 19 18 16 21 21 C 1.36377 * 120.16648 * 179.71736 * 20 19 18 22 22 C 1.40869 * 119.82922 * 0.57484 * 21 20 19 23 23 C 1.41155 * 120.16310 * 179.67955 * 22 21 20 24 24 H 1.08006 * 119.99958 * 165.11784 * 23 22 21 25 25 C 1.39903 * 119.99927 * 345.11139 * 23 22 21 26 26 N 1.30867 * 120.00482 * 324.05759 * 25 23 22 27 27 Si 1.86808 * 119.99779 * 144.05798 * 25 23 22 28 28 H 1.48492 * 109.47071 * 94.99366 * 27 25 23 29 29 H 1.48497 * 109.46812 * 214.99624 * 27 25 23 30 30 H 1.48498 * 109.46912 * 334.99287 * 27 25 23 31 31 C 1.40868 * 119.67410 * 359.69451 * 22 21 20 32 32 C 1.36379 * 119.82512 * 0.02562 * 31 22 21 33 33 H 1.09000 * 109.47326 * 300.00674 * 1 2 3 34 34 H 1.08998 * 109.47133 * 60.00186 * 1 2 3 35 35 H 1.08994 * 109.47182 * 180.02562 * 1 2 3 36 36 H 1.08997 * 109.47512 * 239.99806 * 2 1 3 37 37 H 1.08999 * 109.46664 * 119.99566 * 2 1 3 38 38 H 1.08000 * 119.53319 * 359.97438 * 7 6 5 39 39 H 1.07998 * 120.13784 * 180.27785 * 8 7 6 40 40 H 1.08002 * 120.16219 * 0.05768 * 10 9 8 41 41 H 1.08000 * 119.50008 * 179.97438 * 11 10 9 42 42 H 1.08001 * 119.50830 * 180.02562 * 12 11 10 43 43 H 1.07994 * 120.17502 * 180.02562 * 13 12 11 44 44 H 1.07994 * 120.18715 * 359.97438 * 15 6 5 45 45 H 0.96999 * 120.00050 * 355.45929 * 18 16 3 46 46 H 1.07999 * 119.91687 * 359.97438 * 20 19 18 47 47 H 1.08009 * 120.08209 * 180.26785 * 21 20 19 48 48 H 0.96996 * 120.00340 * 180.02562 * 26 25 23 49 49 H 1.07995 * 120.09283 * 179.97438 * 31 22 21 50 50 H 1.08000 * 119.91738 * 179.97438 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6620 2.0814 -1.2212 6 6 0.5530 2.8661 -1.1892 7 6 0.1820 3.5832 -2.3311 8 6 -0.9255 4.3722 -2.3318 9 6 -1.7051 4.4806 -1.1669 10 6 -2.8523 5.2913 -1.1310 11 6 -3.5838 5.3735 0.0138 12 6 -3.2132 4.6639 1.1547 13 6 -2.1089 3.8687 1.1572 14 6 -1.3283 3.7586 -0.0068 15 6 -0.1815 2.9485 -0.0408 16 6 3.5418 1.4444 0.1238 17 8 4.2216 1.9436 -0.7478 18 7 4.1297 0.8913 1.2032 19 6 5.5179 0.8132 1.2764 20 6 6.1201 -0.2945 1.8729 21 6 7.4793 -0.3807 1.9431 22 6 8.2752 0.6584 1.4223 23 6 9.6825 0.5796 1.4973 24 1 10.2930 1.2393 0.8984 25 6 10.2866 -0.3528 2.3476 26 7 9.7404 -0.6351 3.5028 27 14 11.8729 -1.1950 1.8338 28 1 13.0307 -0.4578 2.4006 29 1 11.8788 -2.5909 2.3404 30 1 11.9702 -1.2057 0.3521 31 6 7.6596 1.7766 0.8265 32 6 6.2993 1.8460 0.7584 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 1.8934 -0.5138 -0.8899 37 1 1.8932 -0.5138 0.8900 38 1 0.7813 3.5061 -3.2263 39 1 -1.2026 4.9170 -3.2223 40 1 -3.1524 5.8460 -2.0078 41 1 -4.4647 5.9978 0.0383 42 1 -3.8114 4.7464 2.0501 43 1 -1.8340 3.3244 2.0485 44 1 0.1173 2.3931 0.8359 45 1 3.5857 0.5512 1.9308 46 1 5.5085 -1.0880 2.2763 47 1 7.9443 -1.2412 2.4014 48 1 10.1594 -1.2813 4.0925 49 1 8.2632 2.5773 0.4254 50 1 5.8258 2.7028 0.3023 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020038280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:13 Heat of formation + Delta-G solvation = -19.442228 kcal Electronic energy + Delta-G solvation = -32413.297253 eV Core-core repulsion = 28141.715231 eV Total energy + Delta-G solvation = -4271.582022 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.162 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.11256 -41.15442 -39.97090 -38.87836 -36.69909 -36.27742 -35.17700 -34.33994 -33.52696 -31.48943 -31.10678 -30.88385 -29.89922 -28.67732 -26.58236 -24.65246 -23.79115 -23.69200 -23.26514 -22.84234 -22.25758 -21.09874 -19.65019 -19.36434 -18.86106 -18.25563 -17.77917 -17.55209 -17.04542 -16.83813 -16.06254 -15.97749 -15.92123 -15.77966 -15.68125 -15.21975 -14.93409 -14.67430 -14.50410 -14.36030 -14.15696 -14.01615 -14.00165 -13.86206 -13.69860 -13.36931 -13.27336 -13.00520 -12.91593 -12.85787 -12.69436 -12.40511 -12.34078 -12.01103 -12.00046 -11.93036 -11.62899 -11.59225 -11.42186 -11.18385 -10.83989 -10.65976 -10.44699 -9.49776 -9.30644 -9.09800 -8.80523 -8.66809 -6.24105 -0.39804 0.09067 0.78598 1.11317 1.12982 1.34005 1.40041 1.50880 1.56834 1.77388 2.06491 2.17432 2.55374 2.60577 3.18079 3.47794 3.54860 3.65557 3.71072 3.76523 3.90571 4.08218 4.09059 4.14000 4.27546 4.35394 4.37758 4.40033 4.42969 4.48365 4.56113 4.71153 4.72831 4.88811 4.93334 4.97867 5.02845 5.07261 5.10656 5.13673 5.15510 5.25069 5.28539 5.31197 5.37896 5.41644 5.61265 5.64731 5.65144 5.71557 5.84935 5.99942 6.05598 6.07678 6.31061 6.34566 6.58700 6.66605 6.85957 6.96214 7.31618 8.12171 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.001614 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.105973 B =17342.308981 C =17542.457283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.127 0.873 5 O -0.307 6.307 6 C 0.122 3.878 7 C -0.155 4.155 8 C -0.062 4.062 9 C -0.104 4.104 10 C -0.100 4.100 11 C -0.135 4.135 12 C -0.108 4.108 13 C -0.132 4.132 14 C -0.029 4.029 15 C -0.219 4.219 16 C 0.494 3.506 17 O -0.564 6.564 18 N -0.630 5.630 19 C -0.019 4.019 20 C -0.092 4.092 21 C -0.198 4.198 22 C 0.081 3.919 23 C -0.500 4.500 24 H 0.074 0.926 25 C 0.056 3.944 26 N -0.784 5.784 27 Si 0.971 3.029 28 H -0.258 1.258 29 H -0.257 1.257 30 H -0.264 1.264 31 C -0.253 4.253 32 C -0.077 4.077 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.418 0.582 46 H 0.128 0.872 47 H 0.106 0.894 48 H 0.298 0.702 49 H 0.088 0.912 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.573 3.822 -1.872 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.017 3.983 4 H 0.144 0.856 5 O -0.220 6.220 6 C 0.077 3.923 7 C -0.174 4.174 8 C -0.080 4.080 9 C -0.104 4.104 10 C -0.118 4.118 11 C -0.153 4.153 12 C -0.125 4.125 13 C -0.149 4.149 14 C -0.029 4.029 15 C -0.237 4.237 16 C 0.281 3.719 17 O -0.442 6.442 18 N -0.276 5.276 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.218 4.218 22 C 0.078 3.922 23 C -0.527 4.527 24 H 0.092 0.908 25 C -0.166 4.166 26 N -0.407 5.407 27 Si 0.791 3.209 28 H -0.182 1.182 29 H -0.181 1.181 30 H -0.188 1.188 31 C -0.273 4.273 32 C -0.097 4.097 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.150 0.850 39 H 0.179 0.821 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.158 0.842 44 H 0.167 0.833 45 H 0.256 0.744 46 H 0.146 0.854 47 H 0.124 0.876 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.992 4.005 -2.419 27.395 hybrid contribution 1.038 -0.304 0.155 1.093 sum -25.954 3.701 -2.263 26.314 Atomic orbital electron populations 1.21892 0.92860 1.03412 1.02402 1.22010 0.98413 0.91917 1.04669 1.22438 0.90097 0.97155 0.88660 0.85574 1.86187 1.42277 1.59812 1.33751 1.19005 0.86531 0.91307 0.95478 1.20419 0.99733 0.99551 0.97653 1.21190 0.92398 0.96203 0.98172 1.18391 0.97869 1.00150 0.93970 1.21301 0.93359 0.97436 0.99702 1.21188 1.00911 1.00289 0.92909 1.21228 0.96466 0.95517 0.99317 1.21230 0.95848 1.00667 0.97199 1.18036 0.94612 0.95815 0.94474 1.21217 0.98214 1.05889 0.98393 1.21022 0.90629 0.78687 0.81541 1.90700 1.66076 1.45619 1.41854 1.42627 1.04936 1.59992 1.20045 1.17047 0.82054 0.98011 1.14023 1.20426 0.94672 0.95712 1.00403 1.20737 0.92930 0.99951 1.08201 1.17920 0.93977 0.90639 0.89626 1.19753 0.92211 1.18469 1.22240 0.90752 1.26770 1.02639 0.94910 0.92267 1.69945 1.40194 1.24748 1.05777 0.85380 0.77027 0.78458 0.80070 1.18204 1.18133 1.18754 1.20631 0.94064 0.99834 1.12811 1.20430 0.93538 0.97018 0.98665 0.90655 0.93595 0.90459 0.91644 0.87418 0.85011 0.82068 0.83455 0.83620 0.83686 0.84170 0.83293 0.74436 0.85428 0.87602 0.89130 0.89345 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.48 71.98 0.61 -1.65 16 2 C -0.13 -2.55 5.59 30.59 0.17 -2.38 16 3 C 0.08 1.93 2.55 29.85 0.08 2.01 16 4 H 0.13 2.50 5.36 -2.39 -0.01 2.48 16 5 O -0.31 -9.26 9.12 -73.20 -0.67 -9.93 16 6 C 0.12 3.09 5.57 22.27 0.12 3.21 16 7 C -0.16 -3.57 9.88 22.14 0.22 -3.35 16 8 C -0.06 -1.12 9.76 22.32 0.22 -0.91 16 9 C -0.10 -1.94 5.74 -21.28 -0.12 -2.06 16 10 C -0.10 -1.39 9.77 22.33 0.22 -1.17 16 11 C -0.14 -1.61 9.95 22.05 0.22 -1.40 16 12 C -0.11 -1.34 9.95 22.04 0.22 -1.12 16 13 C -0.13 -2.03 9.77 22.34 0.22 -1.81 16 14 C -0.03 -0.58 5.74 -21.30 -0.12 -0.70 16 15 C -0.22 -4.58 7.02 22.42 0.16 -4.42 16 16 C 0.49 17.58 7.06 87.66 0.62 18.20 16 17 O -0.56 -26.44 13.98 15.99 0.22 -26.21 16 18 N -0.63 -21.17 5.12 -303.11 -1.55 -22.72 16 19 C -0.02 -0.82 6.29 38.56 0.24 -0.58 16 20 C -0.09 -4.10 9.90 22.13 0.22 -3.88 16 21 C -0.20 -10.24 8.80 22.48 0.20 -10.05 16 22 C 0.08 4.52 5.64 -21.28 -0.12 4.40 16 23 C -0.50 -27.39 8.94 23.39 0.21 -27.18 16 24 H 0.07 4.03 8.04 -2.91 -0.02 4.00 16 25 C 0.06 2.74 4.76 85.24 0.41 3.15 16 26 N -0.78 -38.92 11.56 21.82 0.25 -38.66 16 27 Si 0.97 36.90 29.68 68.60 2.04 38.94 16 28 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 29 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 30 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 31 C -0.25 -13.77 9.74 22.48 0.22 -13.55 16 32 C -0.08 -3.89 8.61 22.14 0.19 -3.70 16 33 H 0.07 0.89 6.77 -2.39 -0.02 0.87 16 34 H 0.04 0.86 6.48 -2.39 -0.02 0.85 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 1.59 7.53 -2.39 -0.02 1.57 16 38 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 39 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.15 2.51 4.23 -2.91 -0.01 2.50 16 45 H 0.42 9.97 8.33 -92.71 -0.77 9.19 16 46 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 47 H 0.11 5.51 6.18 -2.91 -0.02 5.49 16 48 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 49 H 0.09 4.69 8.06 -2.91 -0.02 4.67 16 50 H 0.10 5.00 6.30 -2.91 -0.02 4.98 16 Total: -1.00 -73.58 408.53 4.90 -68.68 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: 0.22 Total: 38.86 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 4.39 Total: -48.95 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -1.30 Total: -61.38 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.44 Total: -36.14 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.04 Total: 38.94 kcal Total: -73.58 4.90 -68.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020038280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.238 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds