Wall clock time and date at job start Tue Mar 31 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46940 * 2 1 4 4 C 1.34960 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.21695 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.41321 * 119.99962 * 179.97438 * 4 3 2 7 7 C 1.34414 * 119.12978 * 83.97883 * 6 4 3 8 8 C 1.50703 * 119.48614 * 359.27386 * 7 6 4 9 9 N 1.36679 * 121.02047 * 179.55141 * 7 6 4 10 10 C 1.37859 * 120.16700 * 342.34986 * 9 7 6 11 11 S 1.76190 * 119.75912 * 197.57152 * 10 9 7 12 12 C 1.76197 * 100.00036 * 6.46138 * 11 10 9 13 13 H 1.07994 * 120.00254 * 355.28244 * 12 11 10 14 14 C 1.38836 * 120.00000 * 175.28094 * 12 11 10 15 15 N 1.31507 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47100 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47087 * 120.00273 * 16 14 12 19 19 H 1.48502 * 109.46954 * 240.00279 * 16 14 12 20 20 C 1.35997 * 120.48255 * 17.61959 * 10 9 7 21 21 C 1.43199 * 119.37523 * 180.38551 * 20 10 9 22 22 N 8.09842 * 128.45952 * 331.48437 * 2 1 3 23 23 C 1.50176 * 119.13410 * 263.95173 * 6 4 3 24 24 H 1.08990 * 109.20259 * 316.56100 * 23 6 4 25 25 C 1.50696 * 109.19854 * 75.90328 * 23 6 4 26 26 C 1.33390 * 125.20354 * 239.99736 * 25 23 6 27 27 C 1.38429 * 114.92443 * 179.97438 * 26 25 23 28 28 C 1.33388 * 114.91731 * 359.97438 * 27 26 25 29 29 S 1.75885 * 125.20331 * 59.69551 * 25 23 6 30 30 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47249 * 300.00353 * 1 2 3 32 32 H 1.08997 * 109.47390 * 60.00354 * 1 2 3 33 33 H 1.08996 * 109.47049 * 239.99864 * 2 1 3 34 34 H 1.09004 * 109.47076 * 119.99861 * 2 1 3 35 35 H 1.08990 * 109.47007 * 84.84130 * 8 7 6 36 36 H 1.09001 * 109.46707 * 204.83511 * 8 7 6 37 37 H 1.09002 * 109.47409 * 324.83258 * 8 7 6 38 38 H 0.97002 * 119.91348 * 162.36739 * 9 7 6 39 39 H 0.96996 * 120.00045 * 179.97438 * 15 14 12 40 40 H 1.07997 * 122.53964 * 359.95615 * 26 25 23 41 41 H 1.07994 * 122.54033 * 180.02562 * 27 26 25 42 42 H 1.08002 * 125.20436 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5242 -0.0005 5 8 4.0856 0.5591 -0.0015 6 6 3.8844 2.8301 -0.0011 7 6 4.0211 3.4822 1.1663 8 6 3.5817 2.8153 2.4443 9 7 4.5472 4.7428 1.2116 10 6 5.2731 5.2292 0.1452 11 16 6.3239 6.6260 0.3671 12 6 6.1964 6.8307 2.1125 13 1 5.5208 6.2090 2.6812 14 6 6.9645 7.7911 2.7567 15 7 7.7869 8.5485 2.0642 16 14 6.8299 8.0076 4.6073 17 1 5.8412 7.0407 5.1481 18 1 8.1548 7.7632 5.2319 19 1 6.3863 9.3915 4.9128 20 6 5.1833 4.6394 -1.0769 21 6 5.9542 5.1592 -2.1660 22 7 6.5669 5.5722 -3.0274 23 6 4.2911 3.4525 -1.3059 24 1 4.8243 2.7142 -1.9045 25 6 3.0575 3.8959 -2.0493 26 6 2.6885 3.4611 -3.2551 27 6 1.5142 4.0111 -3.7395 28 6 0.9292 4.8923 -2.9267 29 16 1.8800 5.0601 -1.4564 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.3852 2.1808 2.8179 36 1 3.3439 3.5760 3.1879 37 1 2.6980 2.2069 2.2515 38 1 4.4098 5.2965 1.9961 39 1 8.3232 9.2198 2.5143 40 1 3.2626 2.7351 -3.8116 41 1 1.1024 3.7463 -4.7021 42 1 0.0107 5.4197 -3.1377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020609355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:45 Heat of formation + Delta-G solvation = 1.922623 kcal Electronic energy + Delta-G solvation = -29552.055967 eV Core-core repulsion = 25522.505116 eV Total energy + Delta-G solvation = -4029.550850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93820 -39.36700 -37.48101 -36.53362 -35.84184 -33.60205 -33.07220 -33.03469 -31.55799 -29.04835 -28.09805 -26.27003 -25.48901 -23.96203 -23.02954 -22.49044 -21.66006 -19.62123 -18.98656 -18.43425 -17.38067 -17.31970 -17.07563 -16.29473 -16.02701 -15.78923 -15.37488 -15.30194 -15.08069 -14.15173 -13.87125 -13.78695 -13.46138 -13.24658 -12.96723 -12.93862 -12.82748 -12.53131 -12.48758 -12.44394 -12.13666 -12.11304 -11.99205 -11.78270 -11.69828 -11.58308 -11.53126 -11.44600 -11.29660 -10.90407 -10.49457 -10.45539 -10.37882 -10.20631 -9.87201 -9.28290 -9.19275 -8.35582 -8.10674 -7.55799 -6.94161 -6.84096 -4.65155 1.21963 1.50332 1.97705 2.17854 2.25021 2.39655 2.52647 2.91389 2.92325 3.00844 3.03754 3.10142 3.28231 3.71299 3.79075 4.14147 4.56051 4.59779 4.68867 4.82254 4.87853 4.94535 5.05165 5.16475 5.18212 5.20975 5.28690 5.39427 5.59314 5.63208 5.65534 5.69557 5.77961 5.81112 5.83879 5.84918 6.07536 6.19096 6.39313 6.43980 6.55652 6.62803 6.77354 6.95719 7.26469 7.55313 7.72593 7.91147 8.44974 8.61578 10.21958 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.003671 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.559678 B = 7625.293059 C = 8983.086532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.344 6.344 4 C 0.548 3.452 5 O -0.507 6.507 6 C -0.267 4.267 7 C 0.214 3.786 8 C -0.134 4.134 9 N -0.622 5.622 10 C 0.186 3.814 11 S 0.128 5.872 12 C -0.579 4.579 13 H 0.087 0.913 14 C 0.088 3.912 15 N -0.850 5.850 16 Si 0.929 3.071 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.211 4.211 21 C 0.288 3.712 22 N -0.460 5.460 23 C 0.146 3.854 24 H 0.087 0.913 25 C -0.145 4.145 26 C -0.155 4.155 27 C -0.131 4.131 28 C -0.233 4.233 29 S 0.126 5.874 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.426 0.574 39 H 0.281 0.719 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.233 -11.434 0.057 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.261 6.261 4 C 0.392 3.608 5 O -0.395 6.395 6 C -0.278 4.278 7 C 0.106 3.894 8 C -0.191 4.191 9 N -0.242 5.242 10 C -0.037 4.037 11 S 0.382 5.618 12 C -0.727 4.727 13 H 0.105 0.895 14 C -0.126 4.126 15 N -0.481 5.481 16 Si 0.754 3.246 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.238 4.238 21 C -0.025 4.025 22 N -0.139 5.139 23 C 0.122 3.878 24 H 0.105 0.895 25 C -0.264 4.264 26 C -0.184 4.184 27 C -0.162 4.162 28 C -0.369 4.369 29 S 0.390 5.610 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.270 0.730 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.330 -9.226 -0.602 16.223 hybrid contribution -0.838 -1.505 1.200 2.100 sum -14.169 -10.732 0.598 17.784 Atomic orbital electron populations 1.21786 0.92865 1.02559 1.03541 1.22593 0.95323 0.81688 1.02167 1.86410 1.24683 1.31119 1.83912 1.19307 0.80302 0.89771 0.71454 1.90885 1.60301 1.43167 1.45118 1.18223 1.18059 0.96590 0.94891 1.19508 0.90338 0.84937 0.94654 1.21169 1.02874 1.01395 0.93695 1.41757 1.50416 1.12838 1.19157 1.23109 0.93788 0.98755 0.88011 1.84531 1.45639 1.21405 1.10194 1.23052 1.31630 1.25968 0.92013 0.89479 1.25079 0.93083 0.93723 1.00670 1.69895 1.21869 1.19033 1.37271 0.85936 0.78856 0.78813 0.81040 1.19007 1.19911 1.19898 1.16163 1.12712 1.06646 0.88318 1.24940 0.92185 0.92763 0.92585 1.81050 1.11791 1.10011 1.11038 1.15990 0.88377 0.92849 0.90537 0.89525 1.24912 1.00786 1.01753 0.98935 1.20027 0.98377 1.04013 0.96029 1.20011 0.96397 0.98877 1.00900 1.25566 1.05474 1.06495 0.99383 1.84258 1.16200 1.41877 1.18652 0.90676 0.91584 0.91460 0.91722 0.91802 0.89106 0.89932 0.89573 0.73043 0.90883 0.85009 0.85095 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.58 6.10 37.16 0.23 0.81 16 3 O -0.34 -4.49 9.67 -41.21 -0.40 -4.89 16 4 C 0.55 8.23 5.33 31.90 0.17 8.40 16 5 O -0.51 -8.69 16.86 -19.42 -0.33 -9.02 16 6 C -0.27 -4.15 4.73 -105.06 -0.50 -4.64 16 7 C 0.21 3.11 6.72 -81.78 -0.55 2.56 16 8 C -0.13 -1.47 9.52 36.01 0.34 -1.12 16 9 N -0.62 -10.09 5.07 -7.75 -0.04 -10.13 16 10 C 0.19 3.55 6.91 -15.64 -0.11 3.44 16 11 S 0.13 2.91 20.41 -107.50 -2.19 0.72 16 12 C -0.58 -13.28 9.14 30.95 0.28 -13.00 16 13 H 0.09 1.78 5.33 -52.49 -0.28 1.50 16 14 C 0.09 2.08 5.49 -17.47 -0.10 1.98 16 15 N -0.85 -21.73 13.22 55.49 0.73 -21.00 16 16 Si 0.93 17.95 29.55 -169.99 -5.02 12.93 16 17 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 C -0.21 -3.96 5.06 -103.72 -0.52 -4.49 16 21 C 0.29 5.95 13.98 -22.51 -0.31 5.63 16 22 N -0.46 -10.11 18.53 41.79 0.77 -9.34 16 23 C 0.15 2.42 2.51 -94.55 -0.24 2.19 16 24 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 25 C -0.15 -2.27 4.91 -36.00 -0.18 -2.44 16 26 C -0.15 -2.22 10.01 -41.21 -0.41 -2.64 16 27 C -0.13 -1.68 10.18 -41.21 -0.42 -2.10 16 28 C -0.23 -2.97 11.23 29.04 0.33 -2.65 16 29 S 0.13 1.84 23.14 -107.50 -2.49 -0.65 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.09 0.87 6.78 -51.93 -0.35 0.52 16 38 H 0.43 6.59 5.91 -40.82 -0.24 6.35 16 39 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -28.64 395.35 -9.26 -37.91 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.65 Total: 6.33 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.61 Total: -8.81 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 1.47 Total: -40.47 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.73 Total: -13.90 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.02 Total: 12.93 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -4.68 Total: 0.07 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.64 -9.26 -37.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020609355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.828 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds