Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46940 * 2 1 4 4 C 1.34960 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.21695 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.41321 * 119.99962 * 179.97438 * 4 3 2 7 7 C 1.34414 * 119.12978 * 83.97883 * 6 4 3 8 8 C 1.50703 * 119.48614 * 359.27386 * 7 6 4 9 9 N 1.36679 * 121.02047 * 179.55141 * 7 6 4 10 10 C 1.37859 * 120.16700 * 342.34986 * 9 7 6 11 11 S 1.76190 * 119.75912 * 197.57152 * 10 9 7 12 12 C 1.76197 * 100.00036 * 6.46138 * 11 10 9 13 13 H 1.07994 * 120.00254 * 355.28244 * 12 11 10 14 14 C 1.38836 * 120.00000 * 175.28094 * 12 11 10 15 15 N 1.31507 * 120.00323 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47100 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47087 * 120.00273 * 16 14 12 19 19 H 1.48502 * 109.46954 * 240.00279 * 16 14 12 20 20 C 1.35997 * 120.48255 * 17.61959 * 10 9 7 21 21 C 1.43199 * 119.37523 * 180.38551 * 20 10 9 22 22 N 8.09842 * 128.45952 * 331.48437 * 2 1 3 23 23 C 1.50176 * 119.13410 * 263.95173 * 6 4 3 24 24 H 1.08990 * 109.20259 * 316.56100 * 23 6 4 25 25 C 1.50696 * 109.19854 * 75.90328 * 23 6 4 26 26 C 1.33390 * 125.20354 * 239.99736 * 25 23 6 27 27 C 1.38429 * 114.92443 * 179.97438 * 26 25 23 28 28 C 1.33388 * 114.91731 * 359.97438 * 27 26 25 29 29 S 1.75885 * 125.20331 * 59.69551 * 25 23 6 30 30 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47249 * 300.00353 * 1 2 3 32 32 H 1.08997 * 109.47390 * 60.00354 * 1 2 3 33 33 H 1.08996 * 109.47049 * 239.99864 * 2 1 3 34 34 H 1.09004 * 109.47076 * 119.99861 * 2 1 3 35 35 H 1.08990 * 109.47007 * 84.84130 * 8 7 6 36 36 H 1.09001 * 109.46707 * 204.83511 * 8 7 6 37 37 H 1.09002 * 109.47409 * 324.83258 * 8 7 6 38 38 H 0.97002 * 119.91348 * 162.36739 * 9 7 6 39 39 H 0.96996 * 120.00045 * 179.97438 * 15 14 12 40 40 H 1.07997 * 122.53964 * 359.95615 * 26 25 23 41 41 H 1.07994 * 122.54033 * 180.02562 * 27 26 25 42 42 H 1.08002 * 125.20436 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3443 1.5242 -0.0005 5 8 4.0856 0.5591 -0.0015 6 6 3.8844 2.8301 -0.0011 7 6 4.0211 3.4822 1.1663 8 6 3.5817 2.8153 2.4443 9 7 4.5472 4.7428 1.2116 10 6 5.2731 5.2292 0.1452 11 16 6.3239 6.6260 0.3671 12 6 6.1964 6.8307 2.1125 13 1 5.5208 6.2090 2.6812 14 6 6.9645 7.7911 2.7567 15 7 7.7869 8.5485 2.0642 16 14 6.8299 8.0076 4.6073 17 1 5.8412 7.0407 5.1481 18 1 8.1548 7.7632 5.2319 19 1 6.3863 9.3915 4.9128 20 6 5.1833 4.6394 -1.0769 21 6 5.9542 5.1592 -2.1660 22 7 6.5669 5.5722 -3.0274 23 6 4.2911 3.4525 -1.3059 24 1 4.8243 2.7142 -1.9045 25 6 3.0575 3.8959 -2.0493 26 6 2.6885 3.4611 -3.2551 27 6 1.5142 4.0111 -3.7395 28 6 0.9292 4.8923 -2.9267 29 16 1.8800 5.0601 -1.4564 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.3852 2.1808 2.8179 36 1 3.3439 3.5760 3.1879 37 1 2.6980 2.2069 2.2515 38 1 4.4098 5.2965 1.9961 39 1 8.3232 9.2198 2.5143 40 1 3.2626 2.7351 -3.8116 41 1 1.1024 3.7463 -4.7021 42 1 0.0107 5.4197 -3.1377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020609355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -10.940867 kcal Electronic energy + Delta-G solvation = -29552.613769 eV Core-core repulsion = 25522.505116 eV Total energy + Delta-G solvation = -4030.108653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13678 -40.61668 -38.58903 -37.66181 -37.46792 -35.01528 -34.70989 -34.31765 -32.33506 -30.29953 -29.18112 -28.01134 -26.71272 -25.06629 -24.10706 -23.62608 -22.84763 -20.99152 -20.15302 -19.85590 -18.73837 -18.55520 -18.21131 -17.61428 -17.40020 -17.10193 -16.77716 -16.54588 -16.24034 -15.51024 -15.12177 -14.80745 -14.62016 -14.48772 -14.36797 -14.02942 -13.81256 -13.76711 -13.56779 -13.55548 -13.51612 -13.35616 -13.25685 -13.19064 -13.02542 -12.89626 -12.79623 -12.66777 -12.38994 -12.22747 -11.86840 -11.56745 -11.49758 -11.46651 -11.35749 -10.93632 -10.71464 -9.49265 -9.25472 -9.03578 -8.59216 -8.50824 -6.46080 -0.05886 0.28275 0.76101 0.88114 0.98355 1.07618 1.31151 1.38249 1.41704 1.54693 1.70284 1.92378 1.98324 2.13531 2.38663 2.49207 2.85126 2.99573 3.37665 3.53114 3.95284 4.04782 4.10363 4.16739 4.21032 4.32864 4.34220 4.43653 4.52000 4.56067 4.61238 4.76431 4.77448 4.83834 4.92626 5.01404 5.04352 5.11791 5.23566 5.24355 5.31414 5.50055 5.51585 5.70306 5.86875 5.96525 6.30542 6.76911 6.79187 6.84257 8.49122 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.003671 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.559678 B = 7625.293059 C = 8983.086532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.343 6.343 4 C 0.557 3.443 5 O -0.532 6.532 6 C -0.276 4.276 7 C 0.213 3.787 8 C -0.132 4.132 9 N -0.616 5.616 10 C 0.203 3.797 11 S 0.047 5.953 12 C -0.577 4.577 13 H 0.109 0.891 14 C 0.035 3.965 15 N -0.898 5.898 16 Si 0.998 3.002 17 H -0.243 1.243 18 H -0.278 1.278 19 H -0.274 1.274 20 C -0.205 4.205 21 C 0.293 3.707 22 N -0.488 5.488 23 C 0.147 3.853 24 H 0.080 0.920 25 C -0.169 4.169 26 C -0.155 4.155 27 C -0.137 4.137 28 C -0.221 4.221 29 S 0.102 5.898 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.431 0.569 39 H 0.281 0.719 40 H 0.138 0.862 41 H 0.160 0.840 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.190 -13.050 1.308 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 O -0.259 6.259 4 C 0.402 3.598 5 O -0.423 6.423 6 C -0.286 4.286 7 C 0.106 3.894 8 C -0.189 4.189 9 N -0.236 5.236 10 C -0.021 4.021 11 S 0.299 5.701 12 C -0.724 4.724 13 H 0.127 0.873 14 C -0.173 4.173 15 N -0.531 5.531 16 Si 0.818 3.182 17 H -0.166 1.166 18 H -0.204 1.204 19 H -0.200 1.200 20 C -0.231 4.231 21 C -0.019 4.019 22 N -0.167 5.167 23 C 0.124 3.876 24 H 0.098 0.902 25 C -0.287 4.287 26 C -0.186 4.186 27 C -0.168 4.168 28 C -0.356 4.356 29 S 0.366 5.634 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.275 0.725 39 H 0.090 0.910 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.350 -10.897 0.636 19.659 hybrid contribution -0.040 -1.135 0.641 1.304 sum -16.390 -12.032 1.278 20.373 Atomic orbital electron populations 1.21798 0.90517 1.04136 1.03586 1.22923 0.97113 0.80262 1.02374 1.86401 1.23262 1.32937 1.83277 1.19092 0.80851 0.89029 0.70796 1.90876 1.61068 1.43781 1.46533 1.18300 1.18509 0.97078 0.94740 1.19996 0.89417 0.83963 0.96043 1.21287 1.03402 1.01962 0.92220 1.41731 1.49943 1.13608 1.18346 1.22702 0.93190 0.97370 0.88837 1.84783 1.48529 1.24777 1.11974 1.23415 1.31612 1.25938 0.91448 0.87307 1.26086 0.92617 0.93357 1.05270 1.70036 1.23540 1.20324 1.39213 0.84903 0.78966 0.79031 0.75260 1.16557 1.20377 1.19982 1.16470 1.12173 1.06952 0.87519 1.25330 0.91831 0.92155 0.92547 1.81028 1.12620 1.10891 1.12177 1.15938 0.88612 0.91596 0.91497 0.90227 1.24761 1.01043 1.03241 0.99678 1.20320 0.98950 1.03737 0.95546 1.20283 0.95769 0.98639 1.02076 1.25923 1.05841 1.05991 0.97870 1.84283 1.16730 1.42025 1.20358 0.88337 0.91038 0.91864 0.92151 0.91063 0.88400 0.87605 0.88444 0.72513 0.90979 0.84378 0.82299 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.05 0.87 6.10 71.98 0.44 1.31 16 3 O -0.34 -8.28 9.67 -58.77 -0.57 -8.85 16 4 C 0.56 16.03 5.33 68.58 0.37 16.39 16 5 O -0.53 -17.77 16.86 19.20 0.32 -17.45 16 6 C -0.28 -8.31 4.73 -20.15 -0.10 -8.41 16 7 C 0.21 5.85 6.72 40.93 0.28 6.13 16 8 C -0.13 -2.51 9.52 71.24 0.68 -1.83 16 9 N -0.62 -19.39 5.07 -178.44 -0.90 -20.30 16 10 C 0.20 7.80 6.91 83.22 0.58 8.38 16 11 S 0.05 2.23 20.41 -56.49 -1.15 1.07 16 12 C -0.58 -26.52 9.14 67.96 0.62 -25.89 16 13 H 0.11 4.31 5.33 -2.91 -0.02 4.29 16 14 C 0.03 1.65 5.49 84.88 0.47 2.12 16 15 N -0.90 -47.36 13.22 21.65 0.29 -47.08 16 16 Si 1.00 36.24 29.55 68.60 2.03 38.27 16 17 H -0.24 -7.80 7.11 99.48 0.71 -7.10 16 18 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 20 C -0.21 -7.80 5.06 -19.28 -0.10 -7.89 16 21 C 0.29 12.47 13.98 88.34 1.23 13.70 16 22 N -0.49 -22.11 18.53 18.99 0.35 -21.76 16 23 C 0.15 4.86 2.51 -13.34 -0.03 4.83 16 24 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 25 C -0.17 -5.14 4.91 24.59 0.12 -5.02 16 26 C -0.15 -4.25 10.01 21.22 0.21 -4.04 16 27 C -0.14 -3.18 10.18 21.22 0.22 -2.96 16 28 C -0.22 -5.04 11.23 66.72 0.75 -4.29 16 29 S 0.10 2.85 23.14 -56.49 -1.31 1.54 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 34 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 37 H 0.10 1.67 6.78 -2.39 -0.02 1.66 16 38 H 0.43 12.66 5.91 -92.71 -0.55 12.12 16 39 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -63.88 395.35 6.07 -57.82 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.54 Total: 25.22 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 6.47 Total: -8.49 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -0.27 Total: -89.13 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.24 Total: -26.30 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -2.46 Total: 2.62 kcal Total: -63.88 6.07 -57.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020609355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.875 kcal (2) G-P(sol) polarization free energy of solvation -63.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds