Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47248 * 2 1 4 4 C 1.34967 * 117.00209 * 180.02562 * 3 2 1 5 5 O 1.21692 * 119.99660 * 359.97438 * 4 3 2 6 6 C 1.41322 * 120.00049 * 180.02562 * 4 3 2 7 7 C 1.34401 * 119.13187 * 185.77196 * 6 4 3 8 8 C 1.50707 * 119.48876 * 0.40046 * 7 6 4 9 9 N 1.36809 * 120.99405 * 180.17234 * 7 6 4 10 10 C 1.37858 * 120.06391 * 18.14361 * 9 7 6 11 11 S 1.76201 * 119.75610 * 162.18705 * 10 9 7 12 12 C 1.76195 * 100.00096 * 3.82163 * 11 10 9 13 13 H 1.07995 * 120.00012 * 354.32705 * 12 11 10 14 14 C 1.38839 * 119.99905 * 174.32994 * 12 11 10 15 15 N 1.31502 * 119.99964 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99913 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47154 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.46940 * 240.00067 * 16 14 12 19 19 H 1.48498 * 109.47390 * 119.99606 * 16 14 12 20 20 C 1.35993 * 120.48513 * 341.90796 * 10 9 7 21 21 C 1.43198 * 119.37535 * 179.84876 * 20 10 9 22 22 N 7.47129 * 97.01214 * 11.01418 * 2 1 3 23 23 C 1.50181 * 119.13116 * 5.79102 * 6 4 3 24 24 H 1.08999 * 109.19938 * 43.42353 * 23 6 4 25 25 C 1.50693 * 109.20286 * 284.12270 * 23 6 4 26 26 C 1.33389 * 125.20091 * 118.36925 * 25 23 6 27 27 C 1.38433 * 114.91776 * 179.85858 * 26 25 23 28 28 C 1.33381 * 114.92132 * 0.43238 * 27 26 25 29 29 S 1.75886 * 109.59667 * 359.76929 * 28 27 26 30 30 H 1.09008 * 109.47217 * 59.99961 * 1 2 3 31 31 H 1.08993 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47121 * 300.00341 * 1 2 3 33 33 H 1.08999 * 109.47276 * 240.00030 * 2 1 3 34 34 H 1.08997 * 109.47093 * 119.99564 * 2 1 3 35 35 H 1.08995 * 109.47120 * 55.40254 * 8 7 6 36 36 H 1.09006 * 109.46926 * 175.40356 * 8 7 6 37 37 H 1.08998 * 109.46962 * 295.40116 * 8 7 6 38 38 H 0.97003 * 120.01924 * 197.89770 * 9 7 6 39 39 H 0.97002 * 120.00093 * 0.02562 * 15 14 12 40 40 H 1.07999 * 122.54010 * 0.02562 * 26 25 23 41 41 H 1.08000 * 122.53893 * 180.20466 * 27 26 25 42 42 H 1.08005 * 125.20423 * 179.75260 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3444 1.5242 -0.0005 5 8 4.0856 0.5590 -0.0005 6 6 3.8845 2.8301 0.0000 7 6 5.2139 2.9883 -0.1186 8 6 6.0960 1.7744 -0.2583 9 7 5.7777 4.2348 -0.1191 10 6 5.0696 5.3133 0.3667 11 16 5.9207 6.7927 0.8045 12 6 7.5574 6.3602 0.3160 13 1 7.7711 5.3596 -0.0298 14 6 8.5723 7.3057 0.3755 15 7 8.3122 8.5239 0.7970 16 14 10.3073 6.8474 -0.1431 17 1 10.3362 5.4264 -0.5738 18 1 11.2326 7.0356 1.0031 19 1 10.7327 7.7154 -1.2704 20 6 3.7185 5.2457 0.5051 21 6 3.0070 6.3789 1.0152 22 7 2.4420 7.2788 1.4167 23 6 2.9580 4.0044 0.1335 24 1 2.2189 3.7919 0.9060 25 6 2.2515 4.2300 -1.1783 26 6 0.9324 4.1592 -1.3634 27 6 0.5109 4.4083 -2.6583 28 6 1.4884 4.6725 -3.5265 29 16 3.0407 4.6195 -2.7012 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.7590 1.1759 -1.1046 36 1 7.1258 2.0907 -0.4240 37 1 6.0410 1.1786 0.6528 38 1 6.6779 4.3601 -0.4582 39 1 7.4113 8.7618 1.0667 40 1 0.2451 3.9279 -0.5631 41 1 -0.5302 4.3866 -2.9446 42 1 1.3482 4.8860 -4.5759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020609356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = 0.226903 kcal Electronic energy + Delta-G solvation = -29669.879456 eV Core-core repulsion = 25640.255074 eV Total energy + Delta-G solvation = -4029.624382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.98223 -39.36958 -37.55734 -36.64142 -35.89537 -33.78512 -33.23421 -32.64817 -31.57760 -29.06475 -28.13776 -25.83060 -25.36387 -23.97252 -23.10618 -22.37651 -21.75137 -19.69218 -19.03233 -18.75070 -17.65094 -17.32506 -16.70183 -16.53148 -16.28951 -15.78697 -15.34862 -15.18569 -14.57909 -14.24324 -13.98567 -13.69385 -13.41353 -13.19143 -13.08784 -12.87705 -12.78300 -12.65039 -12.56015 -12.48550 -12.46838 -12.17561 -12.14742 -11.85591 -11.71801 -11.66411 -11.42413 -11.30904 -11.06213 -10.55523 -10.42633 -10.38155 -10.34780 -9.95535 -9.85836 -9.30439 -9.12643 -8.36171 -8.15667 -7.76322 -7.26037 -7.12387 -4.77034 0.95972 1.35559 1.91003 1.98256 2.27943 2.36554 2.86724 3.04106 3.04285 3.09652 3.17763 3.20737 3.21782 3.59425 3.76995 3.99407 4.50759 4.58800 4.65506 4.74550 4.89134 4.94913 5.14302 5.19043 5.23035 5.24502 5.29627 5.56961 5.65368 5.66904 5.71156 5.71739 5.77824 5.82127 5.88724 5.97884 6.04722 6.09571 6.39438 6.42454 6.59187 6.70594 6.77792 7.03059 7.16749 7.47660 7.82659 8.07835 8.28687 8.52949 10.15327 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.003567 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.691366 B = 7847.439186 C = 8877.955381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.345 6.345 4 C 0.528 3.472 5 O -0.535 6.535 6 C -0.285 4.285 7 C 0.260 3.740 8 C -0.116 4.116 9 N -0.617 5.617 10 C 0.194 3.806 11 S 0.068 5.932 12 C -0.645 4.645 13 H 0.082 0.918 14 C 0.052 3.948 15 N -0.855 5.855 16 Si 1.090 2.910 17 H -0.282 1.282 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.199 4.199 21 C 0.285 3.715 22 N -0.455 5.455 23 C 0.138 3.862 24 H 0.092 0.908 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.131 4.131 28 C -0.232 4.232 29 S 0.105 5.895 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.430 0.570 39 H 0.280 0.720 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -14.934 -5.610 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.262 6.262 4 C 0.379 3.621 5 O -0.429 6.429 6 C -0.294 4.294 7 C 0.148 3.852 8 C -0.173 4.173 9 N -0.237 5.237 10 C -0.028 4.028 11 S 0.322 5.678 12 C -0.792 4.792 13 H 0.100 0.900 14 C -0.162 4.162 15 N -0.485 5.485 16 Si 0.914 3.086 17 H -0.207 1.207 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.226 4.226 21 C -0.028 4.028 22 N -0.133 5.133 23 C 0.115 3.885 24 H 0.110 0.890 25 C -0.257 4.257 26 C -0.172 4.172 27 C -0.162 4.162 28 C -0.368 4.368 29 S 0.368 5.632 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.275 0.725 39 H 0.093 0.907 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.988 -11.779 -5.068 14.604 hybrid contribution -2.024 -2.394 -0.324 3.152 sum -9.013 -14.173 -5.392 17.640 Atomic orbital electron populations 1.21784 0.93078 1.02453 1.03485 1.22485 0.95056 0.81611 1.01892 1.86245 1.24301 1.30891 1.84743 1.18947 0.80351 0.89420 0.73395 1.90845 1.59437 1.43306 1.49298 1.18248 0.92233 0.92568 1.26400 1.20087 0.92561 0.86598 0.85959 1.21300 0.96809 0.93403 1.05743 1.42132 1.18934 1.03669 1.58981 1.22615 0.93350 0.93173 0.93686 1.83971 1.04651 1.10225 1.68994 1.23968 0.93756 1.03539 1.57941 0.90044 1.26286 1.05301 0.91995 0.92664 1.70782 1.24280 1.18770 1.34676 0.83223 0.72283 0.75666 0.77422 1.20711 1.20222 1.20167 1.16455 0.88844 0.93715 1.23558 1.25022 0.93123 0.92282 0.92389 1.81102 1.09145 1.10362 1.12733 1.16128 0.93563 0.87625 0.91226 0.89014 1.24794 0.96730 1.05867 0.98334 1.19999 0.94582 1.05156 0.97495 1.20063 0.99871 1.03267 0.92987 1.25538 0.96179 1.11654 1.03432 1.84361 1.08964 1.68984 1.00853 0.91521 0.90797 0.91604 0.92003 0.91981 0.88261 0.91913 0.87911 0.72506 0.90711 0.84704 0.85050 0.82633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.68 6.10 37.16 0.23 0.90 16 3 O -0.35 -4.60 9.23 -41.23 -0.38 -4.98 16 4 C 0.53 7.74 7.53 31.90 0.24 7.98 16 5 O -0.53 -8.14 12.47 -19.41 -0.24 -8.39 16 6 C -0.28 -4.30 4.95 -105.06 -0.52 -4.82 16 7 C 0.26 3.82 6.72 -81.72 -0.55 3.27 16 8 C -0.12 -1.41 8.34 36.01 0.30 -1.11 16 9 N -0.62 -10.09 5.20 -7.73 -0.04 -10.13 16 10 C 0.19 3.65 6.92 -15.65 -0.11 3.54 16 11 S 0.07 1.52 19.43 -107.50 -2.09 -0.57 16 12 C -0.65 -14.86 9.17 30.95 0.28 -14.58 16 13 H 0.08 1.70 5.22 -52.49 -0.27 1.43 16 14 C 0.05 1.25 5.49 -17.47 -0.10 1.16 16 15 N -0.85 -22.63 13.66 55.49 0.76 -21.88 16 16 Si 1.09 20.88 29.92 -169.99 -5.09 15.80 16 17 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 18 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 20 C -0.20 -3.61 5.03 -103.73 -0.52 -4.14 16 21 C 0.28 5.67 13.98 -22.48 -0.31 5.36 16 22 N -0.45 -9.64 18.54 41.83 0.78 -8.86 16 23 C 0.14 2.18 2.14 -94.55 -0.20 1.98 16 24 H 0.09 1.41 7.95 -51.93 -0.41 0.99 16 25 C -0.14 -2.12 4.69 -36.01 -0.17 -2.29 16 26 C -0.14 -1.99 10.01 -41.20 -0.41 -2.40 16 27 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 28 C -0.23 -3.01 11.23 29.04 0.33 -2.68 16 29 S 0.10 1.57 23.14 -107.50 -2.49 -0.92 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 34 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.10 1.20 7.01 -51.93 -0.36 0.84 16 36 H 0.06 0.66 7.98 -51.93 -0.41 0.25 16 37 H 0.10 1.27 7.23 -51.93 -0.38 0.90 16 38 H 0.43 6.89 5.59 -40.82 -0.23 6.66 16 39 H 0.28 7.53 7.12 -40.82 -0.29 7.24 16 40 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -27.63 388.61 -9.03 -36.65 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.54 Total: 8.14 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.55 Total: -10.72 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 1.49 Total: -40.87 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.62 Total: -13.36 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.09 Total: 15.80 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -4.58 Total: -1.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.63 -9.03 -36.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020609356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.881 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds