Wall clock time and date at job start Tue Mar 31 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47248 * 2 1 4 4 C 1.34967 * 117.00209 * 180.02562 * 3 2 1 5 5 O 1.21692 * 119.99660 * 359.97438 * 4 3 2 6 6 C 1.41322 * 120.00049 * 180.02562 * 4 3 2 7 7 C 1.34401 * 119.13187 * 185.77196 * 6 4 3 8 8 C 1.50707 * 119.48876 * 0.40046 * 7 6 4 9 9 N 1.36809 * 120.99405 * 180.17234 * 7 6 4 10 10 C 1.37858 * 120.06391 * 18.14361 * 9 7 6 11 11 S 1.76201 * 119.75610 * 162.18705 * 10 9 7 12 12 C 1.76195 * 100.00096 * 3.82163 * 11 10 9 13 13 H 1.07995 * 120.00012 * 354.32705 * 12 11 10 14 14 C 1.38839 * 119.99905 * 174.32994 * 12 11 10 15 15 N 1.31502 * 119.99964 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99913 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47154 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.46940 * 240.00067 * 16 14 12 19 19 H 1.48498 * 109.47390 * 119.99606 * 16 14 12 20 20 C 1.35993 * 120.48513 * 341.90796 * 10 9 7 21 21 C 1.43198 * 119.37535 * 179.84876 * 20 10 9 22 22 N 7.47129 * 97.01214 * 11.01418 * 2 1 3 23 23 C 1.50181 * 119.13116 * 5.79102 * 6 4 3 24 24 H 1.08999 * 109.19938 * 43.42353 * 23 6 4 25 25 C 1.50693 * 109.20286 * 284.12270 * 23 6 4 26 26 C 1.33389 * 125.20091 * 118.36925 * 25 23 6 27 27 C 1.38433 * 114.91776 * 179.85858 * 26 25 23 28 28 C 1.33381 * 114.92132 * 0.43238 * 27 26 25 29 29 S 1.75886 * 109.59667 * 359.76929 * 28 27 26 30 30 H 1.09008 * 109.47217 * 59.99961 * 1 2 3 31 31 H 1.08993 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47121 * 300.00341 * 1 2 3 33 33 H 1.08999 * 109.47276 * 240.00030 * 2 1 3 34 34 H 1.08997 * 109.47093 * 119.99564 * 2 1 3 35 35 H 1.08995 * 109.47120 * 55.40254 * 8 7 6 36 36 H 1.09006 * 109.46926 * 175.40356 * 8 7 6 37 37 H 1.08998 * 109.46962 * 295.40116 * 8 7 6 38 38 H 0.97003 * 120.01924 * 197.89770 * 9 7 6 39 39 H 0.97002 * 120.00093 * 0.02562 * 15 14 12 40 40 H 1.07999 * 122.54010 * 0.02562 * 26 25 23 41 41 H 1.08000 * 122.53893 * 180.20466 * 27 26 25 42 42 H 1.08005 * 125.20423 * 179.75260 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3444 1.5242 -0.0005 5 8 4.0856 0.5590 -0.0005 6 6 3.8845 2.8301 0.0000 7 6 5.2139 2.9883 -0.1186 8 6 6.0960 1.7744 -0.2583 9 7 5.7777 4.2348 -0.1191 10 6 5.0696 5.3133 0.3667 11 16 5.9207 6.7927 0.8045 12 6 7.5574 6.3602 0.3160 13 1 7.7711 5.3596 -0.0298 14 6 8.5723 7.3057 0.3755 15 7 8.3122 8.5239 0.7970 16 14 10.3073 6.8474 -0.1431 17 1 10.3362 5.4264 -0.5738 18 1 11.2326 7.0356 1.0031 19 1 10.7327 7.7154 -1.2704 20 6 3.7185 5.2457 0.5051 21 6 3.0070 6.3789 1.0152 22 7 2.4420 7.2788 1.4167 23 6 2.9580 4.0044 0.1335 24 1 2.2189 3.7919 0.9060 25 6 2.2515 4.2300 -1.1783 26 6 0.9324 4.1592 -1.3634 27 6 0.5109 4.4083 -2.6583 28 6 1.4884 4.6725 -3.5265 29 16 3.0407 4.6195 -2.7012 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.7590 1.1759 -1.1046 36 1 7.1258 2.0907 -0.4240 37 1 6.0410 1.1786 0.6528 38 1 6.6779 4.3601 -0.4582 39 1 7.4113 8.7618 1.0667 40 1 0.2451 3.9279 -0.5631 41 1 -0.5302 4.3866 -2.9446 42 1 1.3482 4.8860 -4.5759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020609356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:47 Heat of formation + Delta-G solvation = -11.550444 kcal Electronic energy + Delta-G solvation = -29670.390160 eV Core-core repulsion = 25640.255074 eV Total energy + Delta-G solvation = -4030.135086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.17518 -40.58002 -38.65284 -37.80912 -37.40924 -35.20899 -34.87962 -33.94534 -32.37172 -30.29070 -29.24470 -27.56649 -26.60348 -25.07550 -24.23428 -23.52202 -22.87707 -21.13990 -20.32537 -20.05325 -19.04366 -18.46084 -17.96380 -17.77698 -17.49374 -17.04178 -16.50900 -16.33347 -15.98075 -15.54168 -15.32930 -14.94304 -14.69592 -14.42916 -14.28375 -14.23362 -14.07434 -13.90437 -13.78459 -13.67850 -13.55195 -13.39491 -13.33454 -13.01049 -12.90146 -12.81227 -12.66529 -12.42791 -12.23551 -11.99425 -11.87059 -11.51926 -11.48013 -11.27487 -11.05697 -10.85113 -10.81314 -9.51046 -9.33514 -9.19211 -9.13310 -8.67548 -6.61705 -0.33955 0.25289 0.49916 0.74862 0.85706 1.27776 1.42387 1.58764 1.60104 1.74434 1.86162 1.97191 2.02309 2.15582 2.33823 2.39767 2.82970 2.86723 3.21178 3.51637 3.98188 4.02692 4.14374 4.18152 4.24876 4.28710 4.32777 4.47242 4.54233 4.62253 4.68998 4.70613 4.80028 4.83534 4.96147 5.03308 5.07078 5.16851 5.27521 5.32280 5.37672 5.51598 5.65606 5.72483 5.78123 5.90589 6.13786 6.65801 6.74632 6.97053 8.27585 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.003567 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.691366 B = 7847.439186 C = 8877.955381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 O -0.349 6.349 4 C 0.529 3.471 5 O -0.541 6.541 6 C -0.285 4.285 7 C 0.255 3.745 8 C -0.109 4.109 9 N -0.614 5.614 10 C 0.206 3.794 11 S -0.002 6.002 12 C -0.640 4.640 13 H 0.102 0.898 14 C 0.005 3.995 15 N -0.894 5.894 16 Si 1.133 2.867 17 H -0.250 1.250 18 H -0.278 1.278 19 H -0.277 1.277 20 C -0.187 4.187 21 C 0.290 3.710 22 N -0.479 5.479 23 C 0.141 3.859 24 H 0.096 0.904 25 C -0.160 4.160 26 C -0.138 4.138 27 C -0.134 4.134 28 C -0.222 4.222 29 S 0.062 5.938 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.431 0.569 39 H 0.264 0.736 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -17.710 -6.948 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.266 6.266 4 C 0.380 3.620 5 O -0.436 6.436 6 C -0.295 4.295 7 C 0.145 3.855 8 C -0.166 4.166 9 N -0.235 5.235 10 C -0.017 4.017 11 S 0.249 5.751 12 C -0.786 4.786 13 H 0.119 0.881 14 C -0.202 4.202 15 N -0.527 5.527 16 Si 0.950 3.050 17 H -0.173 1.173 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.213 4.213 21 C -0.022 4.022 22 N -0.158 5.158 23 C 0.118 3.882 24 H 0.114 0.886 25 C -0.278 4.278 26 C -0.168 4.168 27 C -0.165 4.165 28 C -0.358 4.358 29 S 0.326 5.674 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.277 0.723 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.026 -14.624 -6.415 17.872 hybrid contribution -1.983 -1.659 0.060 2.586 sum -10.009 -16.283 -6.355 20.142 Atomic orbital electron populations 1.21791 0.90949 1.03975 1.03424 1.22771 0.96717 0.80274 1.02004 1.86239 1.23348 1.32655 1.84335 1.18817 0.80921 0.88976 0.73263 1.90839 1.59772 1.43384 1.49583 1.18348 0.92391 0.92741 1.25971 1.20436 0.92964 0.86444 0.85659 1.21315 0.97364 0.92070 1.05803 1.42058 1.18811 1.03599 1.59018 1.22280 0.93142 0.92467 0.93823 1.84208 1.06049 1.13264 1.71542 1.24254 0.93455 1.04258 1.56676 0.88068 1.27732 1.08990 0.91484 0.91975 1.70890 1.23425 1.20466 1.37879 0.82752 0.68053 0.77172 0.76974 1.17289 1.20343 1.20211 1.16790 0.88670 0.93983 1.21823 1.25361 0.92645 0.92286 0.91937 1.81088 1.10258 1.11010 1.13427 1.16129 0.93550 0.86545 0.92016 0.88559 1.24668 0.97248 1.07987 0.97854 1.20300 0.94218 1.03681 0.98562 1.20377 1.01343 1.02511 0.92226 1.25859 0.94613 1.10694 1.04605 1.84485 1.11227 1.69946 1.01792 0.91589 0.88507 0.91588 0.91941 0.91836 0.87885 0.90003 0.87814 0.72330 0.92426 0.83472 0.82062 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.06 1.07 6.10 71.98 0.44 1.51 16 3 O -0.35 -8.63 9.23 -58.85 -0.54 -9.17 16 4 C 0.53 14.62 7.53 68.58 0.52 15.13 16 5 O -0.54 -15.45 12.47 19.21 0.24 -15.21 16 6 C -0.29 -8.24 4.95 -20.15 -0.10 -8.34 16 7 C 0.26 7.14 6.72 40.91 0.28 7.41 16 8 C -0.11 -2.42 8.34 71.24 0.59 -1.82 16 9 N -0.61 -19.59 5.20 -178.36 -0.93 -20.51 16 10 C 0.21 7.77 6.92 83.22 0.58 8.34 16 11 S 0.00 -0.09 19.43 -56.49 -1.10 -1.18 16 12 C -0.64 -29.67 9.17 67.96 0.62 -29.05 16 13 H 0.10 4.12 5.22 -2.91 -0.02 4.11 16 14 C 0.00 0.24 5.49 84.89 0.47 0.70 16 15 N -0.89 -49.04 13.66 21.65 0.30 -48.74 16 16 Si 1.13 41.41 29.92 68.60 2.05 43.46 16 17 H -0.25 -7.72 7.11 99.48 0.71 -7.01 16 18 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.28 -10.05 7.11 99.48 0.71 -9.34 16 20 C -0.19 -6.78 5.03 -19.28 -0.10 -6.87 16 21 C 0.29 11.68 13.98 88.33 1.23 12.92 16 22 N -0.48 -20.61 18.54 19.00 0.35 -20.25 16 23 C 0.14 4.32 2.14 -13.34 -0.03 4.29 16 24 H 0.10 2.85 7.95 -2.39 -0.02 2.83 16 25 C -0.16 -4.66 4.69 24.59 0.12 -4.55 16 26 C -0.14 -3.52 10.01 21.22 0.21 -3.31 16 27 C -0.13 -2.99 10.18 21.22 0.22 -2.78 16 28 C -0.22 -5.18 11.23 66.72 0.75 -4.43 16 29 S 0.06 1.80 23.14 -56.49 -1.31 0.49 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 34 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 35 H 0.10 2.27 7.01 -2.39 -0.02 2.25 16 36 H 0.08 1.50 7.98 -2.38 -0.02 1.48 16 37 H 0.10 2.35 7.23 -2.39 -0.02 2.33 16 38 H 0.43 13.35 5.59 -92.71 -0.52 12.84 16 39 H 0.26 14.98 7.12 -92.71 -0.66 14.32 16 40 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -61.06 388.61 6.28 -54.77 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.69 Total: 28.35 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 6.53 Total: -12.00 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -0.28 Total: -89.51 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.30 Total: -24.38 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.05 Total: 43.46 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.41 Total: -0.70 kcal Total: -61.06 6.28 -54.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020609356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.223 kcal (2) G-P(sol) polarization free energy of solvation -61.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds