Wall clock time and date at job start Tue Mar 31 2020 05:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47119 * 275.98358 * 3 2 1 5 5 N 1.46497 * 109.46934 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00057 * 265.35039 * 5 4 3 7 7 C 1.50699 * 109.47121 * 265.50635 * 6 5 4 8 8 H 1.07999 * 119.99878 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99806 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00184 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00166 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47051 * 89.99686 * 11 9 7 13 13 H 1.48496 * 109.47302 * 210.00063 * 11 9 7 14 14 H 1.48497 * 109.46737 * 329.99882 * 11 9 7 15 15 C 1.34775 * 120.00153 * 85.35340 * 5 4 3 16 16 O 1.21280 * 119.99970 * 1.27880 * 15 5 4 17 17 C 1.50699 * 120.00204 * 181.27973 * 15 5 4 18 18 C 1.53053 * 109.45695 * 126.09271 * 17 15 5 19 19 C 1.53195 * 109.30948 * 181.38785 * 18 17 15 20 20 N 1.46933 * 108.77473 * 305.36327 * 19 18 17 21 21 C 1.34769 * 120.62931 * 233.58815 * 20 19 18 22 22 O 1.21698 * 119.99852 * 173.69806 * 21 20 19 23 23 C 1.46582 * 120.00142 * 353.69352 * 21 20 19 24 24 C 1.36653 * 125.45846 * 149.32694 * 23 21 20 25 25 C 1.37465 * 113.29849 * 179.97438 * 24 23 21 26 26 C 1.33819 * 115.10304 * 359.97438 * 25 24 23 27 27 S 1.70618 * 110.95129 * 359.76186 * 26 25 24 28 28 C 1.46923 * 118.73675 * 53.61428 * 20 19 18 29 29 C 1.53032 * 109.46196 * 246.16111 * 17 15 5 30 30 H 1.09008 * 109.46581 * 155.98687 * 3 2 1 31 31 H 1.08997 * 109.47536 * 35.98662 * 3 2 1 32 32 H 1.09000 * 109.47127 * 60.00330 * 4 3 2 33 33 H 1.08997 * 109.47165 * 300.00532 * 4 3 2 34 34 H 1.08993 * 109.46766 * 25.51027 * 6 5 4 35 35 H 1.09000 * 109.46747 * 145.50452 * 6 5 4 36 36 H 0.96994 * 120.00347 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.44724 * 6.13009 * 17 15 5 38 38 H 1.08993 * 109.49757 * 61.43836 * 18 17 15 39 39 H 1.08994 * 109.49569 * 301.33791 * 18 17 15 40 40 H 1.08996 * 109.58508 * 185.57757 * 19 18 17 41 41 H 1.08998 * 109.58738 * 65.14919 * 19 18 17 42 42 H 1.08003 * 123.35067 * 359.97438 * 24 23 21 43 43 H 1.08003 * 122.45397 * 179.97438 * 25 24 23 44 44 H 1.07996 * 124.52638 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.59230 * 66.17681 * 28 20 19 46 46 H 1.09000 * 109.58630 * 186.46420 * 28 20 19 47 47 H 1.08994 * 109.49987 * 58.66400 * 29 17 15 48 48 H 1.09005 * 109.52487 * 298.58239 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1181 -0.1495 1.4346 5 7 4.5831 -0.1482 1.4346 6 6 5.3167 -1.4160 1.4049 7 6 5.6646 -1.8281 2.8121 8 1 5.3685 -1.2080 3.6452 9 6 6.3610 -2.9969 3.0358 10 7 6.7212 -3.7523 2.0213 11 14 6.7917 -3.5082 4.7801 12 1 5.6979 -4.3456 5.3348 13 1 8.0554 -4.2879 4.7697 14 1 6.9640 -2.2975 5.6225 15 6 5.2560 1.0192 1.4621 16 8 4.6489 2.0680 1.5101 17 6 6.7627 1.0214 1.4329 18 6 7.2492 1.9121 0.2873 19 6 8.7801 1.8844 0.2391 20 7 9.3017 2.2614 1.5600 21 6 10.1970 3.2610 1.6849 22 8 10.5350 3.6405 2.7908 23 6 10.7639 3.8910 0.4889 24 6 11.1682 5.1929 0.3948 25 6 11.6630 5.5202 -0.8453 26 6 11.6653 4.5225 -1.7371 27 16 11.0404 3.0904 -1.0519 28 6 8.8291 1.5276 2.7419 29 6 7.2976 1.5592 2.7620 30 1 2.9709 0.9396 -0.4182 31 1 2.9718 -0.8307 -0.6038 32 1 2.7553 -1.0884 1.8529 33 1 2.7543 0.6818 2.0384 34 1 4.6958 -2.1842 0.9442 35 1 6.2318 -1.2927 0.8256 36 1 7.2107 -4.5747 2.1787 37 1 7.1242 0.0044 1.2809 38 1 6.9088 2.9344 0.4516 39 1 6.8487 1.5421 -0.6564 40 1 9.1350 2.5926 -0.5096 41 1 9.1196 0.8803 -0.0148 42 1 11.1053 5.8949 1.2132 43 1 12.0235 6.5103 -1.0826 44 1 12.0196 4.6108 -2.7534 45 1 9.1726 0.4944 2.6921 46 1 9.2183 1.9990 3.6444 47 1 6.9316 0.9382 3.5796 48 1 6.9567 2.5849 2.9036 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020612671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:49 Heat of formation + Delta-G solvation = -7.924602 kcal Electronic energy + Delta-G solvation = -32094.443959 eV Core-core repulsion = 27855.264986 eV Total energy + Delta-G solvation = -4239.178973 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.42583 -39.44567 -37.86391 -36.98000 -36.51043 -35.25935 -33.28396 -32.72937 -31.41184 -31.04818 -29.73405 -27.27942 -26.52723 -25.00461 -23.78553 -23.34174 -23.03667 -21.57280 -20.15893 -19.21995 -18.59677 -17.86244 -17.50972 -16.81420 -16.48566 -16.31300 -16.07588 -15.44839 -15.29111 -15.15553 -14.74445 -14.56288 -14.43212 -13.91721 -13.68640 -13.55440 -13.52103 -13.18347 -13.01585 -12.97344 -12.64317 -12.58962 -12.39877 -12.38464 -12.22692 -12.07794 -11.79956 -11.71256 -11.51785 -11.17461 -11.10521 -11.06368 -10.95196 -10.74385 -10.46038 -10.33308 -10.10436 -10.00967 -9.88360 -9.20878 -9.10768 -8.67972 -8.65400 -8.56841 -7.97766 -6.30517 -4.38079 0.34821 1.21100 1.66311 2.23515 2.79965 2.84480 2.90513 3.10674 3.16411 3.18672 3.25244 3.29241 3.61756 4.23770 4.30608 4.38884 4.73770 4.75831 4.97538 5.04230 5.06296 5.08499 5.16758 5.24043 5.26606 5.29363 5.40184 5.43460 5.60179 5.60954 5.70658 5.72382 5.85174 5.91645 5.96266 6.02556 6.05361 6.08904 6.14835 6.20195 6.29732 6.47835 6.59186 6.60275 7.02528 7.31190 7.33247 7.64750 7.66523 7.91182 8.05256 8.11026 8.66122 8.83427 9.31098 10.76044 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008187 B = 0.002899 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.146451 B = 9655.358178 C =11794.997862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.220 3.780 3 C -0.045 4.045 4 C 0.126 3.874 5 N -0.595 5.595 6 C 0.235 3.765 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.526 3.474 16 O -0.569 6.569 17 C -0.108 4.108 18 C -0.115 4.115 19 C 0.095 3.905 20 N -0.602 5.602 21 C 0.590 3.410 22 O -0.533 6.533 23 C -0.262 4.262 24 C -0.063 4.063 25 C -0.148 4.148 26 C -0.250 4.250 27 S 0.225 5.775 28 C 0.115 3.885 29 C -0.113 4.113 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.266 0.734 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.166 0.834 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.566 10.872 -9.390 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.086 4.086 4 C 0.000 4.000 5 N -0.325 5.325 6 C 0.116 3.884 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.135 4.135 10 N -0.527 5.527 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.314 3.686 16 O -0.449 6.449 17 C -0.129 4.129 18 C -0.154 4.154 19 C -0.029 4.029 20 N -0.335 5.335 21 C 0.377 3.623 22 O -0.411 6.411 23 C -0.383 4.383 24 C -0.096 4.096 25 C -0.179 4.179 26 C -0.388 4.388 27 S 0.493 5.507 28 C -0.006 4.006 29 C -0.151 4.151 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.184 0.816 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.615 9.932 -9.392 15.647 hybrid contribution 0.984 0.908 1.244 1.828 sum 8.599 10.840 -8.148 16.057 Atomic orbital electron populations 1.81183 1.13089 1.09631 1.08837 1.29124 0.95144 0.92549 0.92931 1.19784 0.81325 1.05872 1.01668 1.21110 0.81843 1.03847 0.93193 1.48270 1.05055 1.08356 1.70806 1.19549 0.92128 0.78917 0.97830 1.21462 1.36716 1.07139 0.92525 0.91976 1.24892 0.95310 0.96035 0.97215 1.69897 1.38511 1.13953 1.30349 0.86581 0.78028 0.78940 0.84520 1.20562 1.21042 1.19593 1.20431 0.89787 0.83111 0.75230 1.90610 1.70545 1.31893 1.51865 1.21337 0.92490 1.02839 0.96232 1.21769 0.93706 1.01261 0.98665 1.22189 0.94983 1.01764 0.83960 1.47991 1.42269 1.34306 1.08952 1.16992 0.78902 0.79089 0.87282 1.90817 1.61585 1.62570 1.26134 1.24669 1.14740 0.99704 0.99152 1.20749 0.96272 0.94501 0.98119 1.20008 1.04266 1.00918 0.92752 1.25561 1.08271 0.99619 1.05312 1.83357 1.54401 1.11509 1.01463 1.21726 0.94367 0.96595 0.87923 1.21711 0.94135 1.02110 0.97173 0.87315 0.87075 0.89308 0.90280 0.94245 0.94007 0.92420 0.86689 0.90575 0.90284 0.89451 0.90068 0.83192 0.84007 0.81604 0.90228 0.88720 0.89328 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.28 18.54 42.15 0.78 -6.50 16 2 C 0.22 3.03 15.43 -20.76 -0.32 2.71 16 3 C -0.05 -0.54 6.00 -29.52 -0.18 -0.72 16 4 C 0.13 1.87 5.31 -4.04 -0.02 1.84 16 5 N -0.59 -10.10 2.48 -175.07 -0.43 -10.53 16 6 C 0.24 4.59 4.77 -5.19 -0.02 4.56 16 7 C -0.54 -12.17 9.27 -34.44 -0.32 -12.49 16 8 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -22.01 13.29 55.43 0.74 -21.28 16 11 Si 0.89 19.01 29.54 -169.99 -5.02 13.99 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 C 0.53 9.01 6.40 -10.99 -0.07 8.94 16 16 O -0.57 -10.90 16.40 5.56 0.09 -10.81 16 17 C -0.11 -1.63 2.15 -91.73 -0.20 -1.83 16 18 C -0.12 -1.44 5.21 -26.60 -0.14 -1.58 16 19 C 0.09 1.06 5.52 -3.71 -0.02 1.04 16 20 N -0.60 -8.08 2.97 -174.34 -0.52 -8.59 16 21 C 0.59 8.57 7.58 -12.90 -0.10 8.47 16 22 O -0.53 -9.41 16.41 5.19 0.09 -9.32 16 23 C -0.26 -3.09 5.72 -36.79 -0.21 -3.30 16 24 C -0.06 -0.67 10.14 -40.44 -0.41 -1.08 16 25 C -0.15 -1.23 10.15 -41.41 -0.42 -1.65 16 26 C -0.25 -1.90 10.92 29.18 0.32 -1.58 16 27 S 0.22 1.95 19.35 -107.50 -2.08 -0.13 16 28 C 0.12 1.63 6.44 -3.71 -0.02 1.61 16 29 C -0.11 -1.72 5.32 -26.61 -0.14 -1.86 16 30 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 33 H 0.08 1.24 7.55 -51.93 -0.39 0.84 16 34 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 35 H 0.04 0.83 6.04 -51.93 -0.31 0.52 16 36 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 37 H 0.12 1.87 5.36 -51.93 -0.28 1.59 16 38 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.85 4.01 -26.53 -0.11 0.74 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 43 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 44 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 413.42 15.07 6.23 6.23 Total: -1.00 -29.56 413.42 -8.98 -38.54 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.48 Total: 3.78 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.37 Total: 4.63 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.57 Total: -46.91 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.18 Total: -20.13 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.08 Total: -0.13 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.56 -8.98 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020612671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.612 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds