Wall clock time and date at job start Tue Mar 31 2020 05:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47119 * 275.98358 * 3 2 1 5 5 N 1.46497 * 109.46934 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00057 * 265.35039 * 5 4 3 7 7 C 1.50699 * 109.47121 * 265.50635 * 6 5 4 8 8 H 1.07999 * 119.99878 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99806 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00184 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00166 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47051 * 89.99686 * 11 9 7 13 13 H 1.48496 * 109.47302 * 210.00063 * 11 9 7 14 14 H 1.48497 * 109.46737 * 329.99882 * 11 9 7 15 15 C 1.34775 * 120.00153 * 85.35340 * 5 4 3 16 16 O 1.21280 * 119.99970 * 1.27880 * 15 5 4 17 17 C 1.50699 * 120.00204 * 181.27973 * 15 5 4 18 18 C 1.53053 * 109.45695 * 126.09271 * 17 15 5 19 19 C 1.53195 * 109.30948 * 181.38785 * 18 17 15 20 20 N 1.46933 * 108.77473 * 305.36327 * 19 18 17 21 21 C 1.34769 * 120.62931 * 233.58815 * 20 19 18 22 22 O 1.21698 * 119.99852 * 173.69806 * 21 20 19 23 23 C 1.46582 * 120.00142 * 353.69352 * 21 20 19 24 24 C 1.36653 * 125.45846 * 149.32694 * 23 21 20 25 25 C 1.37465 * 113.29849 * 179.97438 * 24 23 21 26 26 C 1.33819 * 115.10304 * 359.97438 * 25 24 23 27 27 S 1.70618 * 110.95129 * 359.76186 * 26 25 24 28 28 C 1.46923 * 118.73675 * 53.61428 * 20 19 18 29 29 C 1.53032 * 109.46196 * 246.16111 * 17 15 5 30 30 H 1.09008 * 109.46581 * 155.98687 * 3 2 1 31 31 H 1.08997 * 109.47536 * 35.98662 * 3 2 1 32 32 H 1.09000 * 109.47127 * 60.00330 * 4 3 2 33 33 H 1.08997 * 109.47165 * 300.00532 * 4 3 2 34 34 H 1.08993 * 109.46766 * 25.51027 * 6 5 4 35 35 H 1.09000 * 109.46747 * 145.50452 * 6 5 4 36 36 H 0.96994 * 120.00347 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.44724 * 6.13009 * 17 15 5 38 38 H 1.08993 * 109.49757 * 61.43836 * 18 17 15 39 39 H 1.08994 * 109.49569 * 301.33791 * 18 17 15 40 40 H 1.08996 * 109.58508 * 185.57757 * 19 18 17 41 41 H 1.08998 * 109.58738 * 65.14919 * 19 18 17 42 42 H 1.08003 * 123.35067 * 359.97438 * 24 23 21 43 43 H 1.08003 * 122.45397 * 179.97438 * 25 24 23 44 44 H 1.07996 * 124.52638 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.59230 * 66.17681 * 28 20 19 46 46 H 1.09000 * 109.58630 * 186.46420 * 28 20 19 47 47 H 1.08994 * 109.49987 * 58.66400 * 29 17 15 48 48 H 1.09005 * 109.52487 * 298.58239 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1181 -0.1495 1.4346 5 7 4.5831 -0.1482 1.4346 6 6 5.3167 -1.4160 1.4049 7 6 5.6646 -1.8281 2.8121 8 1 5.3685 -1.2080 3.6452 9 6 6.3610 -2.9969 3.0358 10 7 6.7212 -3.7523 2.0213 11 14 6.7917 -3.5082 4.7801 12 1 5.6979 -4.3456 5.3348 13 1 8.0554 -4.2879 4.7697 14 1 6.9640 -2.2975 5.6225 15 6 5.2560 1.0192 1.4621 16 8 4.6489 2.0680 1.5101 17 6 6.7627 1.0214 1.4329 18 6 7.2492 1.9121 0.2873 19 6 8.7801 1.8844 0.2391 20 7 9.3017 2.2614 1.5600 21 6 10.1970 3.2610 1.6849 22 8 10.5350 3.6405 2.7908 23 6 10.7639 3.8910 0.4889 24 6 11.1682 5.1929 0.3948 25 6 11.6630 5.5202 -0.8453 26 6 11.6653 4.5225 -1.7371 27 16 11.0404 3.0904 -1.0519 28 6 8.8291 1.5276 2.7419 29 6 7.2976 1.5592 2.7620 30 1 2.9709 0.9396 -0.4182 31 1 2.9718 -0.8307 -0.6038 32 1 2.7553 -1.0884 1.8529 33 1 2.7543 0.6818 2.0384 34 1 4.6958 -2.1842 0.9442 35 1 6.2318 -1.2927 0.8256 36 1 7.2107 -4.5747 2.1787 37 1 7.1242 0.0044 1.2809 38 1 6.9088 2.9344 0.4516 39 1 6.8487 1.5421 -0.6564 40 1 9.1350 2.5926 -0.5096 41 1 9.1196 0.8803 -0.0148 42 1 11.1053 5.8949 1.2132 43 1 12.0235 6.5103 -1.0826 44 1 12.0196 4.6108 -2.7534 45 1 9.1726 0.4944 2.6921 46 1 9.2183 1.9990 3.6444 47 1 6.9316 0.9382 3.5796 48 1 6.9567 2.5849 2.9036 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020612671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:48 Heat of formation + Delta-G solvation = -22.846557 kcal Electronic energy + Delta-G solvation = -32095.091023 eV Core-core repulsion = 27855.264986 eV Total energy + Delta-G solvation = -4239.826037 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.59642 -40.70325 -38.71433 -38.06946 -37.69204 -36.71039 -34.74353 -34.15987 -32.53137 -32.26251 -30.56272 -28.92976 -27.60906 -25.91590 -25.05879 -24.67414 -24.27217 -22.60820 -21.18632 -20.00919 -19.84719 -18.96959 -18.74007 -18.30089 -17.98224 -17.41438 -16.95542 -16.72375 -16.36715 -16.23957 -16.02715 -15.82385 -15.78253 -14.99124 -14.81748 -14.80654 -14.50021 -14.32668 -14.21705 -14.03812 -13.72925 -13.66581 -13.60467 -13.54428 -13.39596 -13.27925 -13.04545 -12.96175 -12.80249 -12.69632 -12.59132 -12.26225 -12.07731 -11.92803 -11.77453 -11.63701 -11.54220 -11.40240 -11.14105 -10.64117 -10.41008 -9.95197 -9.64951 -9.46023 -9.32500 -8.12481 -6.22692 -0.41450 0.47294 0.99080 1.44336 1.46708 1.50987 1.55907 1.62761 1.79220 1.82873 1.83838 2.12328 2.31528 2.49148 3.17938 3.20849 3.44874 3.69507 3.77612 3.92545 4.07127 4.12593 4.17192 4.19121 4.30571 4.34770 4.41201 4.49819 4.56184 4.58473 4.61458 4.73343 4.78468 4.87481 4.88999 4.95497 5.00646 5.06037 5.07583 5.12680 5.27415 5.29798 5.40588 5.46171 5.46593 5.74734 5.92049 6.17274 6.27126 6.55601 6.61915 6.91731 6.97407 7.38850 7.50957 8.92364 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008187 B = 0.002899 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.146451 B = 9655.358178 C =11794.997862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.244 3.756 3 C -0.029 4.029 4 C 0.121 3.879 5 N -0.594 5.594 6 C 0.248 3.752 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.035 3.965 10 N -0.912 5.912 11 Si 0.934 3.066 12 H -0.283 1.283 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.525 3.475 16 O -0.589 6.589 17 C -0.104 4.104 18 C -0.109 4.109 19 C 0.095 3.905 20 N -0.603 5.603 21 C 0.586 3.414 22 O -0.578 6.578 23 C -0.305 4.305 24 C -0.064 4.064 25 C -0.158 4.158 26 C -0.233 4.233 27 S 0.255 5.745 28 C 0.121 3.879 29 C -0.105 4.105 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.266 0.734 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.144 0.856 43 H 0.167 0.833 44 H 0.199 0.801 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 11.225 -11.966 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.073 4.073 3 C -0.070 4.070 4 C -0.004 4.004 5 N -0.323 5.323 6 C 0.128 3.872 7 C -0.577 4.577 8 H 0.068 0.932 9 C -0.166 4.166 10 N -0.551 5.551 11 Si 0.761 3.239 12 H -0.209 1.209 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.315 3.685 16 O -0.471 6.471 17 C -0.125 4.125 18 C -0.147 4.147 19 C -0.027 4.027 20 N -0.335 5.335 21 C 0.375 3.625 22 O -0.460 6.460 23 C -0.425 4.425 24 C -0.098 4.098 25 C -0.188 4.188 26 C -0.370 4.370 27 S 0.523 5.477 28 C -0.002 4.002 29 C -0.144 4.144 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.161 0.839 43 H 0.184 0.816 44 H 0.216 0.784 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.672 10.275 -11.987 18.013 hybrid contribution 0.659 0.848 2.033 2.300 sum 9.331 11.123 -9.954 17.603 Atomic orbital electron populations 1.81212 1.14409 1.11231 1.10143 1.29294 0.95180 0.91161 0.91647 1.19722 0.79933 1.07459 0.99929 1.21177 0.80690 1.03422 0.95063 1.48194 1.05841 1.07551 1.70703 1.19264 0.92325 0.79595 0.96001 1.21661 1.35793 1.06579 0.93707 0.93238 1.25337 0.95697 0.96389 0.99180 1.69945 1.39512 1.14325 1.31301 0.85927 0.77540 0.78352 0.82080 1.20940 1.21037 1.19747 1.20730 0.90519 0.82695 0.74571 1.90604 1.71131 1.32454 1.52863 1.21320 0.91140 1.02995 0.97043 1.21748 0.94606 0.99894 0.98466 1.22372 0.93951 1.03193 0.83225 1.48064 1.41987 1.33964 1.09449 1.17432 0.78543 0.78747 0.87738 1.90776 1.63151 1.63986 1.28106 1.24522 1.17198 1.00733 1.00006 1.20959 0.95659 0.94096 0.99092 1.20197 1.04448 1.02403 0.91782 1.25993 1.06126 0.98489 1.06425 1.83147 1.54033 1.11446 0.99043 1.21565 0.93436 0.96824 0.88331 1.21593 0.94903 1.00905 0.96999 0.86165 0.84708 0.89447 0.91254 0.94669 0.93701 0.92525 0.87419 0.91789 0.87969 0.87606 0.88491 0.83860 0.81605 0.78382 0.89799 0.89852 0.90986 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.53 18.54 20.01 0.37 -15.16 16 2 C 0.24 6.37 15.43 89.44 1.38 7.75 16 3 C -0.03 -0.64 6.00 28.79 0.17 -0.47 16 4 C 0.12 3.48 5.31 86.38 0.46 3.94 16 5 N -0.59 -19.58 2.48 -826.18 -2.05 -21.62 16 6 C 0.25 9.44 4.77 85.63 0.41 9.85 16 7 C -0.54 -24.10 9.27 25.60 0.24 -23.86 16 8 H 0.05 2.32 7.81 -2.91 -0.02 2.29 16 9 C 0.04 1.64 5.46 84.65 0.46 2.10 16 10 N -0.91 -44.53 13.29 21.45 0.28 -44.24 16 11 Si 0.93 38.84 29.54 68.60 2.03 40.86 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 15 C 0.53 17.65 6.40 87.66 0.56 18.21 16 16 O -0.59 -22.26 16.40 -3.03 -0.05 -22.30 16 17 C -0.10 -3.08 2.15 -11.51 -0.02 -3.10 16 18 C -0.11 -2.54 5.21 30.68 0.16 -2.38 16 19 C 0.10 1.97 5.52 86.36 0.48 2.45 16 20 N -0.60 -16.12 2.97 -823.71 -2.45 -18.57 16 21 C 0.59 17.30 7.58 86.42 0.66 17.95 16 22 O -0.58 -21.40 16.41 -4.34 -0.07 -21.47 16 23 C -0.30 -6.94 5.72 24.08 0.14 -6.80 16 24 C -0.06 -1.28 10.14 21.72 0.22 -1.06 16 25 C -0.16 -2.19 10.15 21.08 0.21 -1.97 16 26 C -0.23 -2.65 10.92 66.81 0.73 -1.92 16 27 S 0.26 3.73 19.35 -56.49 -1.09 2.64 16 28 C 0.12 3.51 6.44 86.37 0.56 4.07 16 29 C -0.11 -3.29 5.32 30.67 0.16 -3.13 16 30 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.09 2.52 8.04 -2.39 -0.02 2.50 16 33 H 0.07 2.13 7.55 -2.39 -0.02 2.12 16 34 H 0.04 1.39 8.04 -2.39 -0.02 1.37 16 35 H 0.05 1.72 6.04 -2.39 -0.01 1.70 16 36 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 37 H 0.11 3.39 5.36 -2.39 -0.01 3.38 16 38 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 1.82 4.01 -18.54 -0.07 1.74 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 43 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 44 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 45 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.08 2.61 7.00 -2.39 -0.02 2.59 16 47 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 48 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -64.37 413.42 4.87 -59.50 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.93 Total: 18.75 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.97 Total: 21.61 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -3.84 Total: -99.59 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.12 Total: -43.77 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.09 Total: 2.64 kcal Total: -64.37 4.87 -59.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020612671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.651 kcal (2) G-P(sol) polarization free energy of solvation -64.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds