Wall clock time and date at job start Tue Mar 31 2020 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48501 * 109.46659 * 239.99760 * 3 2 1 5 5 H 1.48499 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47158 * 119.99783 * 3 2 1 7 7 C 1.39864 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99877 * 196.42690 * 7 2 1 9 9 C 1.41138 * 119.99828 * 16.43465 * 7 2 1 10 10 C 1.40888 * 120.15217 * 205.02519 * 9 7 2 11 11 C 1.36341 * 119.83269 * 180.02562 * 10 9 7 12 12 C 1.39563 * 120.16322 * 359.97438 * 11 10 9 13 13 N 1.38861 * 119.84050 * 179.97438 * 12 11 10 14 14 C 1.46508 * 119.99936 * 196.69649 * 13 12 11 15 15 H 1.08997 * 110.06470 * 15.75536 * 14 13 12 16 16 C 1.50958 * 110.13518 * 137.31551 * 14 13 12 17 17 N 1.31439 * 133.02047 * 299.23901 * 16 14 13 18 18 C 1.32024 * 121.73353 * 179.76614 * 17 16 14 19 19 C 1.38357 * 121.08844 * 0.53120 * 18 17 16 20 20 C 1.38406 * 119.36892 * 359.44984 * 19 18 17 21 21 C 1.39631 * 106.23468 * 119.23885 * 16 14 13 22 22 C 1.47390 * 108.48871 * 359.97438 * 21 16 14 23 23 O 1.21551 * 124.88564 * 180.02562 * 22 21 16 24 24 N 1.34448 * 110.22314 * 359.97438 * 22 21 16 25 25 C 1.46505 * 125.62469 * 179.97438 * 24 22 21 26 26 C 1.50700 * 109.47064 * 90.02853 * 25 24 22 27 27 C 1.34507 * 125.79360 * 89.71345 * 26 25 24 28 28 C 1.41384 * 106.84218 * 179.88746 * 27 26 25 29 29 C 1.34509 * 106.83984 * 0.37361 * 28 27 26 30 30 O 1.34305 * 125.78263 * 270.01927 * 26 25 24 31 31 C 1.39562 * 120.31662 * 0.25768 * 12 11 10 32 32 C 1.36345 * 120.16021 * 359.48206 * 31 12 11 33 33 H 0.97004 * 120.00100 * 359.97438 * 1 2 3 34 34 H 1.07995 * 120.08629 * 359.97438 * 10 9 7 35 35 H 1.08000 * 119.91632 * 179.97438 * 11 10 9 36 36 H 0.96999 * 120.00363 * 16.69798 * 13 12 11 37 37 H 1.07994 * 119.45437 * 180.25211 * 18 17 16 38 38 H 1.08003 * 120.31212 * 179.72763 * 19 18 17 39 39 H 1.08001 * 120.90232 * 180.30633 * 20 19 18 40 40 H 1.09004 * 109.46904 * 210.02427 * 25 24 22 41 41 H 1.08998 * 109.47248 * 330.01932 * 25 24 22 42 42 H 1.08004 * 126.58185 * 0.02562 * 27 26 25 43 43 H 1.07998 * 126.57539 * 180.16238 * 28 27 26 44 44 H 1.07998 * 125.79156 * 179.78957 * 29 28 27 45 45 H 1.08004 * 119.92377 * 179.71912 * 31 12 11 46 46 H 1.07999 * 120.08072 * 180.22939 * 32 31 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0084 -1.2113 0.0005 8 1 3.0553 -1.2302 0.2651 9 6 1.3459 -2.4087 -0.3447 10 6 1.8239 -3.6450 0.1328 11 6 1.1792 -4.7978 -0.2052 12 6 0.0481 -4.7552 -1.0217 13 7 -0.6030 -5.9335 -1.3622 14 6 -1.5433 -5.9525 -2.4856 15 1 -1.4070 -5.0642 -3.1024 16 6 -1.3365 -7.1965 -3.3154 17 7 -0.3112 -7.6620 -3.9935 18 6 -0.3751 -8.8047 -4.6516 19 6 -1.5352 -9.5586 -4.6632 20 6 -2.6424 -9.1113 -3.9635 21 6 -2.5420 -7.8998 -3.2715 22 6 -3.4961 -7.1408 -2.4434 23 8 -4.6378 -7.4842 -2.2067 24 7 -2.9214 -6.0144 -1.9865 25 6 -3.5659 -5.0132 -1.1329 26 6 -3.3391 -5.3662 0.3145 27 6 -2.3004 -4.9644 1.0688 28 6 -2.4878 -5.5220 2.3544 29 6 -3.6255 -6.2380 2.3065 30 8 -4.1369 -6.1400 1.0685 31 6 -0.4282 -3.5346 -1.5024 32 6 0.2033 -2.3733 -1.1682 33 1 -0.4850 0.8401 0.0004 34 1 2.6992 -3.6795 0.7644 35 1 1.5447 -5.7463 0.1598 36 1 -0.4353 -6.7440 -0.8564 37 1 0.4911 -9.1546 -5.1934 38 1 -1.5749 -10.4895 -5.2094 39 1 -3.5590 -9.6824 -3.9516 40 1 -3.1392 -4.0315 -1.3387 41 1 -4.6361 -4.9946 -1.3391 42 1 -1.4815 -4.3346 0.7535 43 1 -1.8398 -5.3996 3.2096 44 1 -4.0550 -6.7967 3.1249 45 1 -1.3014 -3.5094 -2.1375 46 1 -0.1686 -1.4292 -1.5379 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021104908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:48 Heat of formation + Delta-G solvation = 83.258672 kcal Electronic energy + Delta-G solvation = -34082.670462 eV Core-core repulsion = 29712.001542 eV Total energy + Delta-G solvation = -4370.668920 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.26274 -41.56028 -39.03092 -38.12895 -36.53739 -34.32385 -33.23390 -32.87463 -32.51912 -32.15539 -29.81527 -29.61422 -28.77074 -26.55892 -26.06714 -24.19561 -23.76534 -22.67614 -21.37933 -21.14221 -20.67297 -20.17217 -19.63826 -17.61680 -17.43673 -17.35084 -16.96002 -16.85245 -16.40360 -15.82797 -15.68681 -15.06714 -14.98763 -14.80185 -14.28847 -14.06260 -14.01519 -13.69283 -13.64055 -13.19291 -13.05507 -12.85568 -12.71992 -12.49705 -12.43623 -12.34243 -11.97110 -11.73494 -11.55320 -11.38760 -11.08382 -11.02798 -10.68818 -10.46630 -10.21250 -9.83381 -9.57604 -9.53997 -9.43315 -9.42750 -9.34004 -9.02350 -8.80460 -8.19689 -7.63121 -6.77545 -6.59532 -4.17784 0.33660 0.89150 1.84020 2.59040 2.67990 2.83183 2.98646 3.09168 3.12014 3.14799 3.22783 3.27241 3.48658 3.60227 3.97543 4.11687 4.25413 4.50565 4.62405 4.67098 4.71995 4.91109 4.96047 5.10626 5.20040 5.28035 5.39886 5.52384 5.55445 5.64122 5.70550 5.74792 6.10363 6.17770 6.18541 6.23411 6.30627 6.36907 6.46521 6.71828 6.80039 6.88028 6.94835 7.06950 7.23884 7.38115 7.48258 7.55325 7.62156 7.69126 7.98827 8.02206 8.12186 8.30845 8.47025 8.64913 8.94337 9.00929 10.25615 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.003141 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.956553 B = 8913.144431 C =10573.472426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.464 4.464 8 H 0.073 0.927 9 C 0.085 3.915 10 C -0.190 4.190 11 C -0.137 4.137 12 C 0.080 3.920 13 N -0.731 5.731 14 C 0.414 3.586 15 H 0.127 0.873 16 C 0.143 3.857 17 N -0.452 5.452 18 C 0.129 3.871 19 C -0.179 4.179 20 C -0.008 4.008 21 C -0.208 4.208 22 C 0.565 3.435 23 O -0.519 6.519 24 N -0.611 5.611 25 C 0.223 3.777 26 C -0.049 4.049 27 C -0.160 4.160 28 C -0.214 4.214 29 C -0.049 4.049 30 O -0.175 6.175 31 C -0.159 4.159 32 C -0.126 4.126 33 H 0.278 0.722 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.388 0.612 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.166 0.834 43 H 0.144 0.856 44 H 0.196 0.804 45 H 0.085 0.915 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -13.525 -5.494 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.494 4.494 8 H 0.091 0.909 9 C 0.082 3.918 10 C -0.210 4.210 11 C -0.159 4.159 12 C -0.016 4.016 13 N -0.368 5.368 14 C 0.222 3.778 15 H 0.144 0.856 16 C 0.001 3.999 17 N -0.161 5.161 18 C -0.028 4.028 19 C -0.199 4.199 20 C -0.035 4.035 21 C -0.214 4.214 22 C 0.351 3.649 23 O -0.395 6.395 24 N -0.347 5.347 25 C 0.103 3.897 26 C -0.099 4.099 27 C -0.180 4.180 28 C -0.233 4.233 29 C -0.117 4.117 30 O -0.072 6.072 31 C -0.181 4.181 32 C -0.146 4.146 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.222 0.778 37 H 0.184 0.816 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.184 0.816 43 H 0.162 0.838 44 H 0.212 0.788 45 H 0.103 0.897 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.664 -12.965 -5.548 15.197 hybrid contribution -0.075 -0.109 0.561 0.576 sum -5.739 -13.074 -4.987 15.124 Atomic orbital electron populations 1.69814 1.07308 1.28935 1.36853 1.25801 0.94715 1.00953 0.92591 0.86438 0.80142 0.80699 0.79817 1.19019 1.20511 1.19229 1.19395 0.97442 0.91179 1.41396 0.90875 1.17509 0.92138 0.91968 0.90226 1.20558 1.02596 0.92615 1.05252 1.19829 0.95874 0.97077 1.03099 1.17135 0.95394 0.84565 1.04457 1.43920 1.47684 1.10765 1.34407 1.19231 0.77250 0.94475 0.86809 0.85563 1.21807 0.88850 0.95642 0.93608 1.66726 1.29633 1.13160 1.06532 1.23047 0.97460 0.88744 0.93545 1.22162 0.94010 1.02172 1.01576 1.21309 0.98939 0.92436 0.90795 1.21504 0.98233 0.98326 1.03315 1.18061 0.86311 0.80940 0.79547 1.90775 1.17936 1.70681 1.60111 1.49049 1.14104 1.22152 1.49418 1.19616 0.98921 0.90748 0.80447 1.22567 0.93383 0.99499 0.94485 1.22126 0.99818 1.03226 0.92821 1.21905 0.99270 1.02798 0.99347 1.23944 0.96914 1.04620 0.86226 1.84018 1.46457 1.55903 1.20778 1.20119 1.00949 0.91976 1.05023 1.20942 0.98121 0.96374 0.99165 0.91097 0.88985 0.89536 0.77820 0.81607 0.83679 0.83938 0.86245 0.88473 0.81648 0.83784 0.78754 0.89667 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.87 10.90 55.54 0.61 -19.26 16 2 C 0.08 1.83 5.16 -17.34 -0.09 1.74 16 3 Si 0.90 18.36 29.59 -169.99 -5.03 13.33 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -11.80 9.04 -37.87 -0.34 -12.14 16 8 H 0.07 1.81 7.90 -52.49 -0.41 1.40 16 9 C 0.08 2.09 5.57 -106.79 -0.60 1.50 16 10 C -0.19 -4.31 9.74 -39.26 -0.38 -4.70 16 11 C -0.14 -2.78 9.84 -39.77 -0.39 -3.17 16 12 C 0.08 1.50 4.48 -83.69 -0.37 1.13 16 13 N -0.73 -11.69 4.75 -56.00 -0.27 -11.96 16 14 C 0.41 6.07 3.51 -128.43 -0.45 5.62 16 15 H 0.13 1.87 6.24 -51.93 -0.32 1.55 16 16 C 0.14 1.98 7.16 -82.11 -0.59 1.40 16 17 N -0.45 -5.97 10.35 -9.07 -0.09 -6.06 16 18 C 0.13 1.22 11.17 -17.43 -0.19 1.02 16 19 C -0.18 -1.44 10.10 -39.48 -0.40 -1.84 16 20 C -0.01 -0.09 10.23 -38.91 -0.40 -0.48 16 21 C -0.21 -2.79 6.28 -105.04 -0.66 -3.45 16 22 C 0.56 8.83 7.97 -12.68 -0.10 8.73 16 23 O -0.52 -9.48 17.71 5.32 0.09 -9.38 16 24 N -0.61 -9.00 2.82 -173.46 -0.49 -9.49 16 25 C 0.22 3.28 6.54 -5.19 -0.03 3.25 16 26 C -0.05 -0.80 6.90 -35.63 -0.25 -1.05 16 27 C -0.16 -2.78 9.90 -39.70 -0.39 -3.17 16 28 C -0.21 -3.32 10.91 -39.70 -0.43 -3.76 16 29 C -0.05 -0.69 12.09 29.41 0.36 -0.33 16 30 O -0.18 -2.92 10.65 5.68 0.06 -2.85 16 31 C -0.16 -3.19 8.21 -39.77 -0.33 -3.52 16 32 C -0.13 -2.96 8.63 -39.26 -0.34 -3.30 16 33 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 34 H 0.09 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.39 6.22 8.82 -40.82 -0.36 5.86 16 37 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.67 6.74 -51.93 -0.35 1.32 16 41 H 0.10 1.34 8.01 -51.93 -0.42 0.93 16 42 H 0.17 3.26 5.46 -52.48 -0.29 2.97 16 43 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 44 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 45 H 0.09 1.52 5.24 -52.48 -0.28 1.25 16 46 H 0.12 2.98 6.13 -52.49 -0.32 2.66 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -29.50 390.75 -10.45 -39.95 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -4.84 Total: 16.38 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -6.38 Total: -16.54 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.24 Total: -46.78 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.15 Total: -12.24 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.50 -10.45 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021104908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.213 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds