Wall clock time and date at job start Tue Mar 31 2020 05:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86804 * 120.00036 * 2 1 4 4 H 1.48498 * 109.47106 * 272.86281 * 3 2 1 5 5 H 1.48501 * 109.46781 * 32.86167 * 3 2 1 6 6 H 1.48499 * 109.46815 * 152.85889 * 3 2 1 7 7 C 1.39863 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99985 * 346.24679 * 7 2 1 9 9 C 1.41141 * 120.00269 * 166.24980 * 7 2 1 10 10 C 1.40883 * 120.15824 * 149.71949 * 9 7 2 11 11 C 1.36334 * 119.83784 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.16131 * 359.97438 * 11 10 9 13 13 N 1.38866 * 119.84298 * 180.02562 * 12 11 10 14 14 C 1.46497 * 119.99927 * 3.73792 * 13 12 11 15 15 H 1.08998 * 110.06857 * 346.78751 * 14 13 12 16 16 C 1.50965 * 110.08498 * 225.25483 * 14 13 12 17 17 N 1.31444 * 133.01649 * 60.73502 * 16 14 13 18 18 C 1.32014 * 121.73395 * 179.97438 * 17 16 14 19 19 C 1.38358 * 121.09013 * 0.02562 * 18 17 16 20 20 C 1.38403 * 119.37075 * 359.97438 * 19 18 17 21 21 C 1.39622 * 106.23543 * 240.73062 * 16 14 13 22 22 C 1.47384 * 108.49404 * 0.24426 * 21 16 14 23 23 O 1.21549 * 124.89097 * 179.71285 * 22 21 16 24 24 N 1.34452 * 110.22207 * 359.56973 * 22 21 16 25 25 C 1.46497 * 125.62986 * 180.15957 * 24 22 21 26 26 C 1.50704 * 109.47156 * 270.30901 * 25 24 22 27 27 C 1.34510 * 125.79127 * 89.71457 * 26 25 24 28 28 C 1.41388 * 106.84323 * 179.89314 * 27 26 25 29 29 C 1.34519 * 106.83611 * 0.37103 * 28 27 26 30 30 O 1.34301 * 108.42080 * 359.77173 * 29 28 27 31 31 C 1.39570 * 120.31677 * 0.27489 * 12 11 10 32 32 C 1.36339 * 120.15487 * 359.48870 * 31 12 11 33 33 H 0.97002 * 120.00049 * 0.02562 * 1 2 3 34 34 H 1.07999 * 120.07958 * 359.97438 * 10 9 7 35 35 H 1.07998 * 119.92205 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99422 * 183.73726 * 13 12 11 37 37 H 1.07996 * 119.45464 * 179.97438 * 18 17 16 38 38 H 1.07997 * 120.31420 * 179.97438 * 19 18 17 39 39 H 1.08004 * 120.90497 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47612 * 30.30471 * 25 24 22 41 41 H 1.09004 * 109.47498 * 150.30999 * 25 24 22 42 42 H 1.07998 * 126.58198 * 0.02562 * 27 26 25 43 43 H 1.07995 * 126.57950 * 180.12453 * 28 27 26 44 44 H 1.07997 * 125.78805 * 179.75214 * 29 28 27 45 45 H 1.07998 * 119.92139 * 179.72449 * 31 12 11 46 46 H 1.08003 * 120.07995 * 180.22942 * 32 31 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4300 2.0814 -1.3983 5 1 1.4720 2.6344 0.7597 6 1 3.5695 1.4234 0.6387 7 6 2.0083 -1.2112 -0.0005 8 1 1.4916 -2.1332 0.2214 9 6 3.3894 -1.2287 -0.2911 10 6 4.2214 -2.2091 0.2844 11 6 5.5545 -2.2202 -0.0011 12 6 6.0952 -1.2637 -0.8617 13 7 7.4539 -1.2815 -1.1484 14 6 8.3013 -2.3503 -0.6140 15 1 7.7665 -2.8996 0.1608 16 6 9.5760 -1.7691 -0.0516 17 7 9.8209 -0.9101 0.9127 18 6 11.0518 -0.5500 1.2259 19 6 12.1416 -1.0653 0.5469 20 6 11.9359 -1.9735 -0.4771 21 6 10.6203 -2.3353 -0.7853 22 6 10.0448 -3.2461 -1.7911 23 8 10.6895 -3.8923 -2.5937 24 7 8.7041 -3.2616 -1.6910 25 6 7.7952 -4.0530 -2.5239 26 6 7.4077 -3.2555 -3.7424 27 6 8.0622 -3.2464 -4.9175 28 6 7.3565 -2.3693 -5.7728 29 6 6.3175 -1.8884 -5.0665 30 8 6.3536 -2.4287 -3.8374 31 6 5.2780 -0.2863 -1.4314 32 6 3.9423 -0.2660 -1.1585 33 1 -0.4850 0.8401 -0.0004 34 1 3.8042 -2.9502 0.9502 35 1 6.1936 -2.9709 0.4396 36 1 7.8417 -0.5861 -1.7025 37 1 11.2106 0.1590 2.0249 38 1 13.1431 -0.7617 0.8133 39 1 12.7686 -2.3910 -1.0238 40 1 8.2935 -4.9714 -2.8342 41 1 6.9008 -4.3003 -1.9520 42 1 8.9544 -3.8039 -5.1617 43 1 7.6061 -2.1282 -6.7955 44 1 5.5797 -1.1868 -5.4265 45 1 5.7039 0.4535 -2.0929 46 1 3.3104 0.4886 -1.6030 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021104913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:52 Heat of formation + Delta-G solvation = 87.912772 kcal Electronic energy + Delta-G solvation = -34068.717548 eV Core-core repulsion = 29698.250445 eV Total energy + Delta-G solvation = -4370.467103 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.40939 -41.68388 -39.14368 -38.33840 -36.70737 -34.39234 -33.34188 -32.96131 -32.62027 -32.38913 -30.02566 -29.94155 -29.24884 -26.72806 -26.17025 -24.08451 -23.88876 -22.85767 -21.59640 -21.34594 -20.73084 -20.44415 -19.87328 -17.80452 -17.55182 -17.35451 -17.14059 -16.93051 -16.66008 -15.94184 -15.80152 -15.35606 -15.11862 -14.70689 -14.49359 -14.27048 -14.05566 -13.81653 -13.67484 -13.34581 -13.25356 -12.95947 -12.83087 -12.64707 -12.60088 -12.49910 -12.31978 -12.10340 -11.99735 -11.79844 -11.12639 -10.72117 -10.62855 -10.32283 -10.30215 -10.01546 -9.77042 -9.65512 -9.57855 -9.50798 -9.30477 -9.19175 -8.89161 -8.40724 -7.82862 -6.80914 -6.76925 -4.24579 0.23865 0.80865 1.68694 2.43988 2.55101 2.64829 2.72479 2.89299 3.15621 3.16160 3.27376 3.35770 3.38748 3.49953 3.95184 4.06056 4.13009 4.42546 4.53153 4.62158 4.63373 4.71106 4.87913 4.96533 5.09560 5.11065 5.14820 5.28699 5.35777 5.48483 5.53708 5.66607 5.88946 5.90324 5.94024 6.00135 6.14481 6.16565 6.21585 6.42613 6.51259 6.58029 6.74446 6.81855 7.01744 7.20540 7.29713 7.34176 7.51940 7.54379 7.83215 7.84668 7.95164 8.13228 8.32143 8.46675 8.76051 8.93065 10.24654 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009518 B = 0.003389 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.070022 B = 8259.025582 C =10130.996857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.244 1.244 7 C -0.451 4.451 8 H 0.087 0.913 9 C 0.066 3.934 10 C -0.167 4.167 11 C -0.145 4.145 12 C 0.094 3.906 13 N -0.729 5.729 14 C 0.409 3.591 15 H 0.131 0.869 16 C 0.143 3.857 17 N -0.452 5.452 18 C 0.130 3.870 19 C -0.179 4.179 20 C -0.007 4.007 21 C -0.210 4.210 22 C 0.567 3.433 23 O -0.520 6.520 24 N -0.611 5.611 25 C 0.221 3.779 26 C -0.032 4.032 27 C -0.194 4.194 28 C -0.228 4.228 29 C -0.026 4.026 30 O -0.143 6.143 31 C -0.122 4.122 32 C -0.199 4.199 33 H 0.281 0.719 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.390 0.610 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.198 0.802 45 H 0.090 0.910 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.876 -2.667 -2.824 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.168 1.168 7 C -0.481 4.481 8 H 0.105 0.895 9 C 0.062 3.938 10 C -0.187 4.187 11 C -0.166 4.166 12 C -0.002 4.002 13 N -0.365 5.365 14 C 0.217 3.783 15 H 0.148 0.852 16 C 0.000 4.000 17 N -0.160 5.160 18 C -0.026 4.026 19 C -0.198 4.198 20 C -0.034 4.034 21 C -0.215 4.215 22 C 0.355 3.645 23 O -0.396 6.396 24 N -0.347 5.347 25 C 0.100 3.900 26 C -0.084 4.084 27 C -0.214 4.214 28 C -0.247 4.247 29 C -0.096 4.096 30 O -0.036 6.036 31 C -0.144 4.144 32 C -0.218 4.218 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.223 0.777 37 H 0.185 0.815 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.215 0.785 45 H 0.108 0.892 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.925 -2.729 -2.453 20.260 hybrid contribution 1.247 0.953 -1.064 1.896 sum 21.172 -1.776 -3.518 21.536 Atomic orbital electron populations 1.69702 1.07876 1.29717 1.37852 1.26071 0.94729 1.01335 0.91388 0.86350 0.81025 0.80140 0.78539 1.20136 1.22378 1.16762 1.19321 0.91800 0.95459 1.41499 0.89540 1.17645 0.93455 0.91773 0.90907 1.20582 0.92240 1.02663 1.03263 1.19981 0.95673 0.99483 1.01450 1.17104 0.81851 0.99253 1.02007 1.43917 1.05513 1.28042 1.59029 1.19339 0.86423 0.84958 0.87551 0.85173 1.21786 0.95351 0.91827 0.91036 1.66729 1.23782 1.11252 1.14280 1.23066 0.86503 0.95951 0.97088 1.22179 1.01335 0.98876 0.97457 1.21315 0.95342 0.92740 0.93963 1.21470 0.95818 1.03189 1.01070 1.18038 0.82540 0.81172 0.82780 1.90765 1.64793 1.44982 1.39060 1.49040 1.06043 1.44185 1.35457 1.19591 0.93633 0.90330 0.86434 1.22615 0.90048 0.98154 0.97627 1.21612 1.02378 1.03829 0.93613 1.21767 0.98382 1.03113 1.01455 1.24108 1.01343 1.01101 0.83037 1.84235 1.41323 1.46391 1.31660 1.19782 0.93670 0.98756 1.02165 1.20606 0.94283 1.03372 1.03579 0.90848 0.88096 0.88980 0.77688 0.81534 0.83597 0.83872 0.86814 0.87665 0.83873 0.83957 0.78478 0.89227 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.43 13.93 55.54 0.77 -21.66 16 2 C 0.08 2.14 5.45 -17.34 -0.09 2.04 16 3 Si 0.91 21.06 24.40 -169.99 -4.15 16.91 16 4 H -0.27 -6.15 6.64 56.52 0.38 -5.78 16 5 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.75 6.72 56.52 0.38 -5.38 16 7 C -0.45 -12.12 9.58 -37.87 -0.36 -12.49 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.07 1.61 5.14 -106.79 -0.55 1.06 16 10 C -0.17 -3.67 9.74 -39.27 -0.38 -4.05 16 11 C -0.14 -2.75 9.23 -39.77 -0.37 -3.12 16 12 C 0.09 1.73 6.59 -83.68 -0.55 1.18 16 13 N -0.73 -11.18 5.30 -56.00 -0.30 -11.48 16 14 C 0.41 5.52 3.85 -128.43 -0.49 5.03 16 15 H 0.13 1.75 5.42 -51.93 -0.28 1.47 16 16 C 0.14 1.84 7.17 -82.11 -0.59 1.25 16 17 N -0.45 -5.70 10.35 -9.07 -0.09 -5.80 16 18 C 0.13 1.16 11.17 -17.43 -0.19 0.97 16 19 C -0.18 -1.31 10.10 -39.48 -0.40 -1.71 16 20 C -0.01 -0.07 10.23 -38.90 -0.40 -0.46 16 21 C -0.21 -2.56 6.28 -105.04 -0.66 -3.22 16 22 C 0.57 7.84 7.97 -12.68 -0.10 7.73 16 23 O -0.52 -8.29 17.72 5.32 0.09 -8.19 16 24 N -0.61 -7.93 2.82 -173.46 -0.49 -8.42 16 25 C 0.22 2.74 6.54 -5.19 -0.03 2.70 16 26 C -0.03 -0.46 6.90 -35.62 -0.25 -0.70 16 27 C -0.19 -2.64 10.81 -39.70 -0.43 -3.07 16 28 C -0.23 -2.91 10.91 -39.70 -0.43 -3.34 16 29 C -0.03 -0.36 12.09 29.42 0.36 0.00 16 30 O -0.14 -2.24 10.58 5.71 0.06 -2.18 16 31 C -0.12 -2.49 9.82 -39.77 -0.39 -2.88 16 32 C -0.20 -4.61 6.98 -39.26 -0.27 -4.88 16 33 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.09 1.50 5.75 -52.49 -0.30 1.19 16 36 H 0.39 5.98 8.81 -40.82 -0.36 5.62 16 37 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.11 1.23 8.01 -51.93 -0.42 0.81 16 41 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 46 H 0.10 2.36 4.38 -52.48 -0.23 2.13 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -31.27 393.46 -9.76 -41.03 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.00 Total: 11.80 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -6.59 Total: -17.95 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.11 Total: -47.35 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.15 Total: -10.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.15 Total: 16.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.27 -9.76 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021104913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.947 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds