Wall clock time and date at job start Tue Mar 31 2020 05:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86804 * 120.00036 * 2 1 4 4 H 1.48498 * 109.47106 * 272.86281 * 3 2 1 5 5 H 1.48501 * 109.46781 * 32.86167 * 3 2 1 6 6 H 1.48499 * 109.46815 * 152.85889 * 3 2 1 7 7 C 1.39863 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99985 * 346.24679 * 7 2 1 9 9 C 1.41141 * 120.00269 * 166.24980 * 7 2 1 10 10 C 1.40883 * 120.15824 * 149.71949 * 9 7 2 11 11 C 1.36334 * 119.83784 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.16131 * 359.97438 * 11 10 9 13 13 N 1.38866 * 119.84298 * 180.02562 * 12 11 10 14 14 C 1.46497 * 119.99927 * 3.73792 * 13 12 11 15 15 H 1.08998 * 110.06857 * 346.78751 * 14 13 12 16 16 C 1.50965 * 110.08498 * 225.25483 * 14 13 12 17 17 N 1.31444 * 133.01649 * 60.73502 * 16 14 13 18 18 C 1.32014 * 121.73395 * 179.97438 * 17 16 14 19 19 C 1.38358 * 121.09013 * 0.02562 * 18 17 16 20 20 C 1.38403 * 119.37075 * 359.97438 * 19 18 17 21 21 C 1.39622 * 106.23543 * 240.73062 * 16 14 13 22 22 C 1.47384 * 108.49404 * 0.24426 * 21 16 14 23 23 O 1.21549 * 124.89097 * 179.71285 * 22 21 16 24 24 N 1.34452 * 110.22207 * 359.56973 * 22 21 16 25 25 C 1.46497 * 125.62986 * 180.15957 * 24 22 21 26 26 C 1.50704 * 109.47156 * 270.30901 * 25 24 22 27 27 C 1.34510 * 125.79127 * 89.71457 * 26 25 24 28 28 C 1.41388 * 106.84323 * 179.89314 * 27 26 25 29 29 C 1.34519 * 106.83611 * 0.37103 * 28 27 26 30 30 O 1.34301 * 108.42080 * 359.77173 * 29 28 27 31 31 C 1.39570 * 120.31677 * 0.27489 * 12 11 10 32 32 C 1.36339 * 120.15487 * 359.48870 * 31 12 11 33 33 H 0.97002 * 120.00049 * 0.02562 * 1 2 3 34 34 H 1.07999 * 120.07958 * 359.97438 * 10 9 7 35 35 H 1.07998 * 119.92205 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99422 * 183.73726 * 13 12 11 37 37 H 1.07996 * 119.45464 * 179.97438 * 18 17 16 38 38 H 1.07997 * 120.31420 * 179.97438 * 19 18 17 39 39 H 1.08004 * 120.90497 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47612 * 30.30471 * 25 24 22 41 41 H 1.09004 * 109.47498 * 150.30999 * 25 24 22 42 42 H 1.07998 * 126.58198 * 0.02562 * 27 26 25 43 43 H 1.07995 * 126.57950 * 180.12453 * 28 27 26 44 44 H 1.07997 * 125.78805 * 179.75214 * 29 28 27 45 45 H 1.07998 * 119.92139 * 179.72449 * 31 12 11 46 46 H 1.08003 * 120.07995 * 180.22942 * 32 31 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4300 2.0814 -1.3983 5 1 1.4720 2.6344 0.7597 6 1 3.5695 1.4234 0.6387 7 6 2.0083 -1.2112 -0.0005 8 1 1.4916 -2.1332 0.2214 9 6 3.3894 -1.2287 -0.2911 10 6 4.2214 -2.2091 0.2844 11 6 5.5545 -2.2202 -0.0011 12 6 6.0952 -1.2637 -0.8617 13 7 7.4539 -1.2815 -1.1484 14 6 8.3013 -2.3503 -0.6140 15 1 7.7665 -2.8996 0.1608 16 6 9.5760 -1.7691 -0.0516 17 7 9.8209 -0.9101 0.9127 18 6 11.0518 -0.5500 1.2259 19 6 12.1416 -1.0653 0.5469 20 6 11.9359 -1.9735 -0.4771 21 6 10.6203 -2.3353 -0.7853 22 6 10.0448 -3.2461 -1.7911 23 8 10.6895 -3.8923 -2.5937 24 7 8.7041 -3.2616 -1.6910 25 6 7.7952 -4.0530 -2.5239 26 6 7.4077 -3.2555 -3.7424 27 6 8.0622 -3.2464 -4.9175 28 6 7.3565 -2.3693 -5.7728 29 6 6.3175 -1.8884 -5.0665 30 8 6.3536 -2.4287 -3.8374 31 6 5.2780 -0.2863 -1.4314 32 6 3.9423 -0.2660 -1.1585 33 1 -0.4850 0.8401 -0.0004 34 1 3.8042 -2.9502 0.9502 35 1 6.1936 -2.9709 0.4396 36 1 7.8417 -0.5861 -1.7025 37 1 11.2106 0.1590 2.0249 38 1 13.1431 -0.7617 0.8133 39 1 12.7686 -2.3910 -1.0238 40 1 8.2935 -4.9714 -2.8342 41 1 6.9008 -4.3003 -1.9520 42 1 8.9544 -3.8039 -5.1617 43 1 7.6061 -2.1282 -6.7955 44 1 5.5797 -1.1868 -5.4265 45 1 5.7039 0.4535 -2.0929 46 1 3.3104 0.4886 -1.6030 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021104913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:51 Heat of formation + Delta-G solvation = 68.944855 kcal Electronic energy + Delta-G solvation = -34069.540059 eV Core-core repulsion = 29698.250445 eV Total energy + Delta-G solvation = -4371.289614 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.46975 -42.62977 -40.11655 -39.87622 -37.94647 -35.93693 -34.67991 -34.13593 -33.61682 -33.41349 -31.71424 -30.93896 -30.84062 -27.73813 -27.36912 -25.72545 -24.75223 -23.92772 -22.86655 -22.54850 -22.23954 -21.67953 -20.91531 -19.29600 -18.78108 -18.42962 -18.36523 -18.13442 -17.57021 -17.05520 -16.99475 -16.86345 -16.11845 -15.97492 -15.76176 -15.45454 -15.18273 -15.06196 -14.77412 -14.62723 -14.43351 -14.21240 -14.10931 -14.02755 -13.80940 -13.70400 -13.66175 -13.58345 -13.18414 -12.88475 -12.77408 -12.52684 -12.10245 -11.81900 -11.67891 -11.45609 -11.09068 -11.03686 -10.82374 -10.71087 -10.44523 -10.25784 -10.22983 -9.53551 -9.45532 -8.73600 -8.42965 -6.19368 -0.58472 0.07329 0.62788 0.91158 0.97294 1.29711 1.43006 1.48595 1.53581 1.59205 1.85991 2.15076 2.18756 2.48472 2.57388 2.73871 2.80500 3.19264 3.61251 3.65678 3.73754 3.84567 3.89283 3.94313 4.01478 4.13705 4.27508 4.30011 4.33116 4.39597 4.41202 4.45866 4.71368 4.79895 4.89415 4.91960 4.98446 5.01794 5.07249 5.17098 5.20352 5.27776 5.49334 5.51559 5.54030 5.58089 5.72081 5.78274 6.01416 6.19835 6.28995 6.43452 6.57821 6.72621 6.79709 6.83219 6.94392 7.03640 8.36957 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009518 B = 0.003389 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.070022 B = 8259.025582 C =10130.996857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.040 3.960 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.251 1.251 7 C -0.484 4.484 8 H 0.049 0.951 9 C 0.034 3.966 10 C -0.167 4.167 11 C -0.148 4.148 12 C 0.136 3.864 13 N -0.721 5.721 14 C 0.409 3.591 15 H 0.132 0.868 16 C 0.128 3.872 17 N -0.483 5.483 18 C 0.128 3.872 19 C -0.154 4.154 20 C -0.010 4.010 21 C -0.225 4.225 22 C 0.566 3.434 23 O -0.547 6.547 24 N -0.606 5.606 25 C 0.217 3.783 26 C -0.044 4.044 27 C -0.201 4.201 28 C -0.226 4.226 29 C -0.040 4.040 30 O -0.168 6.168 31 C -0.136 4.136 32 C -0.199 4.199 33 H 0.286 0.714 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.393 0.607 37 H 0.199 0.801 38 H 0.190 0.810 39 H 0.161 0.839 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.112 0.888 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.711 -1.641 -2.812 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.171 4.171 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.174 1.174 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.031 3.969 10 C -0.187 4.187 11 C -0.169 4.169 12 C 0.038 3.962 13 N -0.356 5.356 14 C 0.218 3.782 15 H 0.149 0.851 16 C -0.014 4.014 17 N -0.192 5.192 18 C -0.028 4.028 19 C -0.174 4.174 20 C -0.036 4.036 21 C -0.231 4.231 22 C 0.355 3.645 23 O -0.425 6.425 24 N -0.341 5.341 25 C 0.097 3.903 26 C -0.096 4.096 27 C -0.221 4.221 28 C -0.245 4.245 29 C -0.108 4.108 30 O -0.063 6.063 31 C -0.158 4.158 32 C -0.219 4.219 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.227 0.773 37 H 0.216 0.784 38 H 0.207 0.793 39 H 0.178 0.822 40 H 0.146 0.854 41 H 0.126 0.874 42 H 0.165 0.835 43 H 0.182 0.818 44 H 0.234 0.766 45 H 0.130 0.870 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 24.809 -1.719 -2.451 24.989 hybrid contribution 0.181 0.497 -1.099 1.220 sum 24.990 -1.221 -3.550 25.271 Atomic orbital electron populations 1.69755 1.09008 1.30588 1.41072 1.26710 0.95318 1.03850 0.91182 0.85500 0.79392 0.76933 0.78985 1.18918 1.21531 1.17439 1.19306 0.93311 0.94581 1.44395 0.93246 1.17715 0.92839 0.93736 0.92592 1.20747 0.93303 1.01800 1.02803 1.20232 0.94916 1.00347 1.01410 1.17189 0.83095 0.97014 0.98878 1.43921 1.04338 1.28684 1.58635 1.19405 0.87022 0.84397 0.87365 0.85128 1.21469 0.94660 0.93111 0.92122 1.66715 1.26044 1.11824 1.14606 1.23717 0.85710 0.95819 0.97513 1.22623 1.02918 0.96541 0.95274 1.21687 0.94609 0.92840 0.94473 1.21441 0.97081 1.03611 1.00984 1.18322 0.82531 0.80948 0.82690 1.90746 1.65225 1.46219 1.40278 1.48912 1.06069 1.43884 1.35247 1.19748 0.93886 0.90579 0.86102 1.22890 0.89938 0.98357 0.98391 1.21790 1.02540 1.04013 0.93785 1.22054 0.97794 1.02362 1.02313 1.24612 1.02146 1.01510 0.82550 1.84205 1.42086 1.47128 1.32873 1.19972 0.92859 1.00022 1.02944 1.20635 0.95424 1.02711 1.03123 0.90363 0.87889 0.85694 0.77263 0.78391 0.79292 0.82166 0.85414 0.87353 0.83493 0.81786 0.76572 0.87018 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.27 13.93 21.81 0.30 -49.97 16 2 C 0.04 2.21 5.45 85.23 0.46 2.67 16 3 Si 0.97 44.46 24.40 68.60 1.67 46.14 16 4 H -0.26 -11.45 6.64 99.48 0.66 -10.79 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.25 -11.61 6.72 99.48 0.67 -10.94 16 7 C -0.48 -27.68 9.58 23.38 0.22 -27.45 16 8 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 9 C 0.03 1.72 5.14 -21.27 -0.11 1.61 16 10 C -0.17 -7.33 9.74 22.47 0.22 -7.11 16 11 C -0.15 -5.37 9.23 22.15 0.20 -5.17 16 12 C 0.14 4.77 6.59 38.67 0.25 5.02 16 13 N -0.72 -20.41 5.30 -331.07 -1.75 -22.16 16 14 C 0.41 10.14 3.85 128.83 0.50 10.64 16 15 H 0.13 3.19 5.42 -2.39 -0.01 3.17 16 16 C 0.13 2.97 7.17 43.04 0.31 3.28 16 17 N -0.48 -10.63 10.35 -182.60 -1.89 -12.52 16 18 C 0.13 1.71 11.17 84.69 0.95 2.66 16 19 C -0.15 -1.47 10.10 22.34 0.23 -1.25 16 20 C -0.01 -0.15 10.23 22.71 0.23 0.09 16 21 C -0.23 -4.90 6.28 -20.14 -0.13 -5.03 16 22 C 0.57 14.63 7.97 86.70 0.69 15.33 16 23 O -0.55 -16.65 17.72 -3.87 -0.07 -16.72 16 24 N -0.61 -14.67 2.82 -821.18 -2.32 -16.98 16 25 C 0.22 5.10 6.54 85.64 0.56 5.66 16 26 C -0.04 -1.20 6.90 24.83 0.17 -1.02 16 27 C -0.20 -5.20 10.81 22.19 0.24 -4.96 16 28 C -0.23 -5.37 10.91 22.19 0.24 -5.13 16 29 C -0.04 -1.01 12.09 66.97 0.81 -0.20 16 30 O -0.17 -5.08 10.58 -2.47 -0.03 -5.11 16 31 C -0.14 -5.32 9.82 22.15 0.22 -5.10 16 32 C -0.20 -9.21 6.98 22.47 0.16 -9.06 16 33 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 34 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.13 3.74 5.75 -2.91 -0.02 3.72 16 36 H 0.39 11.04 8.81 -92.70 -0.82 10.22 16 37 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.13 2.60 8.01 -2.39 -0.02 2.58 16 41 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.22 4.35 8.06 -2.91 -0.02 4.32 16 45 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.09 4.36 4.38 -2.91 -0.01 4.35 16 Total: -1.00 -71.99 393.46 2.51 -69.48 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.16 Total: 32.38 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 6.43 Total: -24.53 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -5.66 Total: -101.64 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.09 Total: -21.82 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.67 Total: 46.14 kcal Total: -71.99 2.51 -69.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021104913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.423 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds