Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86799 * 119.99978 * 2 1 4 4 H 1.48499 * 109.46882 * 240.00088 * 3 2 1 5 5 H 1.48501 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46977 * 120.00140 * 3 2 1 7 7 C 1.37872 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00423 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47221 * 179.97438 * 9 7 2 11 11 C 1.36830 * 125.06457 * 265.02298 * 10 9 7 12 12 C 1.34231 * 109.92970 * 179.97438 * 11 10 9 13 13 C 1.50702 * 126.50123 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46892 * 260.02445 * 13 12 11 15 15 C 1.46905 * 111.00030 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47334 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47422 * 179.97438 * 16 15 14 18 18 N 1.30800 * 126.24920 * 269.98094 * 17 16 15 19 19 N 1.28684 * 110.29281 * 179.97438 * 18 17 16 20 20 C 1.32307 * 109.48098 * 0.05683 * 19 18 17 21 21 C 1.40816 * 133.46652 * 179.97438 * 20 19 18 22 22 C 1.36026 * 119.22832 * 179.97438 * 21 20 19 23 23 C 1.40543 * 119.74629 * 359.97438 * 22 21 20 24 24 C 1.34954 * 120.36606 * 359.97438 * 23 22 21 25 25 N 1.36074 * 126.24250 * 90.00014 * 17 16 15 26 26 C 1.46491 * 107.00080 * 0.26696 * 12 11 10 27 27 C 1.39636 * 134.03696 * 180.50980 * 26 12 11 28 28 C 1.36626 * 119.76358 * 179.56501 * 27 26 12 29 29 C 1.38825 * 120.53321 * 359.69981 * 28 27 26 30 30 C 1.37756 * 120.66395 * 359.97438 * 29 28 27 31 31 C 1.37682 * 125.05921 * 84.98287 * 10 9 7 32 32 H 0.97001 * 119.99670 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.46493 * 59.99950 * 9 7 2 34 34 H 1.08994 * 109.46923 * 300.00033 * 9 7 2 35 35 H 1.07995 * 125.03282 * 359.96855 * 11 10 9 36 36 H 1.09005 * 109.47016 * 140.03197 * 13 12 11 37 37 H 1.08997 * 109.47386 * 20.02462 * 13 12 11 38 38 H 1.00900 * 111.00305 * 303.95125 * 14 13 12 39 39 H 1.09003 * 109.46870 * 60.00338 * 15 14 13 40 40 H 1.08995 * 109.46996 * 300.00426 * 15 14 13 41 41 H 1.09004 * 109.47363 * 59.99606 * 16 15 14 42 42 H 1.09004 * 109.47050 * 300.00193 * 16 15 14 43 43 H 1.08004 * 120.39039 * 359.95108 * 21 20 19 44 44 H 1.07996 * 120.12877 * 179.97438 * 22 21 20 45 45 H 1.07998 * 119.81679 * 180.02562 * 23 22 21 46 46 H 1.08006 * 119.74725 * 179.74654 * 24 23 22 47 47 H 1.08000 * 120.11336 * 359.24269 * 27 26 12 48 48 H 1.07998 * 119.73120 * 179.71411 * 28 27 26 49 49 H 1.07997 * 119.66759 * 180.02562 * 29 28 27 50 50 H 1.08001 * 120.10669 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6391 -4.2729 -1.1181 12 6 3.5050 -5.2378 -0.7701 13 6 4.2110 -6.1877 -1.7030 14 7 3.5173 -7.4827 -1.7003 15 6 4.1788 -8.4361 -2.6011 16 6 3.4292 -9.7695 -2.5719 17 6 4.1073 -10.7474 -3.4965 18 7 3.8430 -10.9228 -4.7654 19 7 4.6055 -11.8348 -5.2582 20 6 5.4081 -12.2970 -4.3133 21 6 6.4185 -13.2776 -4.2947 22 6 7.0802 -13.5275 -3.1328 23 6 6.7488 -12.8068 -1.9726 24 6 5.7788 -11.8691 -2.0058 25 7 5.1061 -11.6094 -3.1634 26 6 3.6290 -5.1961 0.6889 27 6 4.3690 -5.9260 1.6214 28 6 4.2671 -5.6283 2.9509 29 6 3.4383 -4.6015 3.3823 30 6 2.7046 -3.8644 2.4789 31 6 2.7927 -4.1503 1.1202 32 1 -0.4850 0.8401 0.0004 33 1 0.6241 -2.5567 -0.8903 34 1 0.6248 -2.5571 0.8896 35 1 2.3321 -4.0505 -2.1294 36 1 5.2398 -6.3261 -1.3704 37 1 4.2075 -5.7758 -2.7121 38 1 3.4505 -7.8552 -0.7649 39 1 5.2075 -8.5901 -2.2752 40 1 4.1747 -8.0396 -3.6163 41 1 2.4005 -9.6153 -2.8979 42 1 3.4328 -10.1663 -1.5567 43 1 6.6649 -13.8254 -5.1923 44 1 7.8574 -14.2768 -3.1019 45 1 7.2737 -13.0040 -1.0496 46 1 5.5294 -11.3241 -1.1073 47 1 5.0156 -6.7264 1.2932 48 1 4.8362 -6.1961 3.6721 49 1 3.3687 -4.3778 4.4365 50 1 2.0623 -3.0679 2.8245 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022024974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = 164.298797 kcal Electronic energy + Delta-G solvation = -31727.363980 eV Core-core repulsion = 27528.335068 eV Total energy + Delta-G solvation = -4199.028911 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.175 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.90546 -40.66051 -38.61923 -36.93360 -36.45895 -34.69027 -33.59577 -32.66173 -31.65655 -31.00091 -29.65948 -29.02590 -28.18991 -26.94349 -24.74748 -24.68311 -23.67453 -23.07548 -22.67219 -21.91856 -21.45233 -20.52380 -19.01232 -18.45764 -17.55728 -16.96856 -16.76471 -16.37065 -16.22935 -15.99656 -15.67242 -15.27470 -15.23319 -14.96576 -14.54386 -14.12738 -14.03372 -13.50525 -13.40973 -13.23775 -13.14995 -13.04646 -12.93264 -12.46099 -12.33254 -12.25216 -12.01310 -11.93934 -11.86298 -11.55050 -11.51564 -11.45742 -11.23189 -11.00037 -10.83671 -10.80511 -10.77704 -10.38194 -10.11795 -9.97461 -9.69274 -8.98196 -8.69044 -8.50421 -8.42626 -7.53829 -6.94014 -6.28481 -4.39125 0.12951 0.64913 1.68838 1.86651 2.21338 2.32760 2.87648 3.19239 3.20359 3.23899 3.28357 3.58606 3.80423 3.90831 3.97765 4.23561 4.25917 4.30434 4.40223 4.45106 4.61757 4.73623 4.79829 5.01933 5.03318 5.08292 5.18605 5.27167 5.32314 5.35578 5.43645 5.47061 5.55267 5.57507 5.61670 5.70994 5.74695 5.77370 5.83814 5.85692 6.08010 6.22781 6.35692 6.39645 6.43422 6.57076 6.81919 6.95791 6.97259 7.01956 7.09422 7.35424 7.38497 7.48681 7.62310 7.84457 8.06544 8.14073 8.20658 8.68702 9.28726 10.76834 Molecular weight = 375.18amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.001633 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.993502 B =17142.392979 C =18441.152235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.235 3.765 10 N -0.450 5.450 11 C 0.098 3.902 12 C -0.214 4.214 13 C 0.149 3.851 14 N -0.681 5.681 15 C 0.065 3.935 16 C -0.029 4.029 17 C 0.154 3.846 18 N -0.243 5.243 19 N -0.289 5.289 20 C 0.187 3.813 21 C -0.078 4.078 22 C -0.090 4.090 23 C -0.139 4.139 24 C 0.068 3.932 25 N -0.390 5.390 26 C -0.105 4.105 27 C -0.086 4.086 28 C -0.156 4.156 29 C -0.122 4.122 30 C -0.107 4.107 31 C 0.106 3.894 32 H 0.268 0.732 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.160 0.840 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.342 0.658 39 H 0.024 0.976 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.157 0.843 44 H 0.148 0.852 45 H 0.156 0.844 46 H 0.169 0.831 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 -25.772 -0.136 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.117 3.883 10 N -0.126 5.126 11 C -0.034 4.034 12 C -0.221 4.221 13 C 0.020 3.980 14 N -0.313 5.313 15 C -0.066 4.066 16 C -0.069 4.069 17 C -0.109 4.109 18 N -0.082 5.082 19 N -0.135 5.135 20 C -0.062 4.062 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.161 4.161 24 C -0.055 4.055 25 N -0.070 5.070 26 C -0.110 4.110 27 C -0.104 4.104 28 C -0.175 4.175 29 C -0.141 4.141 30 C -0.127 4.127 31 C -0.003 4.003 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.177 0.823 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.160 0.840 39 H 0.042 0.958 40 H 0.100 0.900 41 H 0.133 0.867 42 H 0.100 0.900 43 H 0.174 0.826 44 H 0.165 0.835 45 H 0.174 0.826 46 H 0.187 0.813 47 H 0.123 0.877 48 H 0.128 0.872 49 H 0.133 0.867 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.895 -24.852 -2.092 27.631 hybrid contribution 1.784 0.681 1.780 2.611 sum 13.679 -24.171 -0.312 27.775 Atomic orbital electron populations 1.69917 1.06056 1.27789 1.49009 1.24945 0.94944 0.99500 0.94351 0.86444 0.79481 0.81972 0.78987 1.19937 1.20945 1.19946 1.21323 0.93691 0.89899 1.53133 0.91799 1.19704 0.87064 0.81996 0.99525 1.44809 1.36248 1.28093 1.03471 1.21614 0.96368 0.93540 0.91903 1.19671 1.07832 1.03323 0.91311 1.19967 0.93318 0.86909 0.97780 1.60517 1.53793 1.03234 1.13727 1.21887 0.94426 0.90999 0.99289 1.20040 1.00561 0.90491 0.95767 1.24907 0.93109 0.97885 0.94988 1.74275 1.18217 1.10945 1.04799 1.75002 1.06110 1.09399 1.22956 1.22376 1.01282 0.98966 0.83596 1.20311 0.93381 0.95825 1.00421 1.21204 0.99372 0.99295 0.91581 1.20973 0.98032 0.96487 1.00563 1.21704 0.94846 1.00033 0.88891 1.43760 1.25815 1.27175 1.10283 1.19017 1.00701 0.98477 0.92775 1.19966 0.99024 0.99185 0.92271 1.20398 1.01937 0.99959 0.95224 1.20636 0.98230 0.96829 0.98418 1.20175 1.01683 1.00904 0.89912 1.18250 0.97339 0.95716 0.88993 0.92197 0.93428 0.93797 0.82285 0.95194 0.90690 0.84012 0.95790 0.90038 0.86726 0.89968 0.82588 0.83465 0.82624 0.81330 0.87732 0.87234 0.86707 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 13.29 55.43 0.74 -23.96 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.24 5.74 5.76 -5.19 -0.03 5.71 16 10 N -0.45 -9.67 2.76 -115.71 -0.32 -9.99 16 11 C 0.10 1.83 11.19 -16.73 -0.19 1.64 16 12 C -0.21 -3.57 5.83 -102.71 -0.60 -4.17 16 13 C 0.15 1.94 6.22 -4.97 -0.03 1.91 16 14 N -0.68 -7.72 6.49 -115.05 -0.75 -8.47 16 15 C 0.06 0.62 5.67 -3.82 -0.02 0.59 16 16 C -0.03 -0.24 6.00 -27.89 -0.17 -0.41 16 17 C 0.15 1.66 7.39 -154.22 -1.14 0.52 16 18 N -0.24 -3.39 12.19 32.94 0.40 -2.99 16 19 N -0.29 -3.99 12.31 31.14 0.38 -3.61 16 20 C 0.19 1.97 7.92 -156.06 -1.24 0.74 16 21 C -0.08 -0.51 10.11 -39.40 -0.40 -0.91 16 22 C -0.09 -0.36 10.07 -39.51 -0.40 -0.75 16 23 C -0.14 -0.51 9.98 -39.88 -0.40 -0.91 16 24 C 0.07 0.38 10.91 -16.70 -0.18 0.19 16 25 N -0.39 -3.61 2.95 -59.73 -0.18 -3.78 16 26 C -0.10 -1.87 6.35 -105.13 -0.67 -2.54 16 27 C -0.09 -1.30 10.05 -39.64 -0.40 -1.70 16 28 C -0.16 -2.27 9.97 -39.95 -0.40 -2.67 16 29 C -0.12 -1.93 10.01 -39.54 -0.40 -2.33 16 30 C -0.11 -2.03 10.00 -39.43 -0.39 -2.42 16 31 C 0.11 2.16 6.81 -83.99 -0.57 1.59 16 32 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 33 H 0.05 1.19 8.12 -51.93 -0.42 0.77 16 34 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.16 2.68 8.06 -52.49 -0.42 2.26 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.34 3.67 8.72 -39.29 -0.34 3.33 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.15 0.13 8.06 -52.49 -0.42 -0.29 16 45 H 0.16 0.09 8.06 -52.49 -0.42 -0.33 16 46 H 0.17 0.49 8.06 -52.48 -0.42 0.06 16 47 H 0.10 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 49 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 50 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 428.39 15.07 6.46 6.46 Total: -1.00 -32.84 428.39 -13.40 -46.24 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.07 Total: 3.34 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -8.03 Total: -18.99 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.28 Total: -52.79 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -32.84 -13.40 -46.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022024974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.535 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds