Wall clock time and date at job start Tue Mar 31 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86799 * 119.99978 * 2 1 4 4 H 1.48499 * 109.46882 * 240.00088 * 3 2 1 5 5 H 1.48501 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46977 * 120.00140 * 3 2 1 7 7 C 1.37872 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00423 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47221 * 179.97438 * 9 7 2 11 11 C 1.36830 * 125.06457 * 265.02298 * 10 9 7 12 12 C 1.34231 * 109.92970 * 179.97438 * 11 10 9 13 13 C 1.50702 * 126.50123 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46892 * 260.02445 * 13 12 11 15 15 C 1.46905 * 111.00030 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47334 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47422 * 179.97438 * 16 15 14 18 18 N 1.30800 * 126.24920 * 269.98094 * 17 16 15 19 19 N 1.28684 * 110.29281 * 179.97438 * 18 17 16 20 20 C 1.32307 * 109.48098 * 0.05683 * 19 18 17 21 21 C 1.40816 * 133.46652 * 179.97438 * 20 19 18 22 22 C 1.36026 * 119.22832 * 179.97438 * 21 20 19 23 23 C 1.40543 * 119.74629 * 359.97438 * 22 21 20 24 24 C 1.34954 * 120.36606 * 359.97438 * 23 22 21 25 25 N 1.36074 * 126.24250 * 90.00014 * 17 16 15 26 26 C 1.46491 * 107.00080 * 0.26696 * 12 11 10 27 27 C 1.39636 * 134.03696 * 180.50980 * 26 12 11 28 28 C 1.36626 * 119.76358 * 179.56501 * 27 26 12 29 29 C 1.38825 * 120.53321 * 359.69981 * 28 27 26 30 30 C 1.37756 * 120.66395 * 359.97438 * 29 28 27 31 31 C 1.37682 * 125.05921 * 84.98287 * 10 9 7 32 32 H 0.97001 * 119.99670 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.46493 * 59.99950 * 9 7 2 34 34 H 1.08994 * 109.46923 * 300.00033 * 9 7 2 35 35 H 1.07995 * 125.03282 * 359.96855 * 11 10 9 36 36 H 1.09005 * 109.47016 * 140.03197 * 13 12 11 37 37 H 1.08997 * 109.47386 * 20.02462 * 13 12 11 38 38 H 1.00900 * 111.00305 * 303.95125 * 14 13 12 39 39 H 1.09003 * 109.46870 * 60.00338 * 15 14 13 40 40 H 1.08995 * 109.46996 * 300.00426 * 15 14 13 41 41 H 1.09004 * 109.47363 * 59.99606 * 16 15 14 42 42 H 1.09004 * 109.47050 * 300.00193 * 16 15 14 43 43 H 1.08004 * 120.39039 * 359.95108 * 21 20 19 44 44 H 1.07996 * 120.12877 * 179.97438 * 22 21 20 45 45 H 1.07998 * 119.81679 * 180.02562 * 23 22 21 46 46 H 1.08006 * 119.74725 * 179.74654 * 24 23 22 47 47 H 1.08000 * 120.11336 * 359.24269 * 27 26 12 48 48 H 1.07998 * 119.73120 * 179.71411 * 28 27 26 49 49 H 1.07997 * 119.66759 * 180.02562 * 29 28 27 50 50 H 1.08001 * 120.10669 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6391 -4.2729 -1.1181 12 6 3.5050 -5.2378 -0.7701 13 6 4.2110 -6.1877 -1.7030 14 7 3.5173 -7.4827 -1.7003 15 6 4.1788 -8.4361 -2.6011 16 6 3.4292 -9.7695 -2.5719 17 6 4.1073 -10.7474 -3.4965 18 7 3.8430 -10.9228 -4.7654 19 7 4.6055 -11.8348 -5.2582 20 6 5.4081 -12.2970 -4.3133 21 6 6.4185 -13.2776 -4.2947 22 6 7.0802 -13.5275 -3.1328 23 6 6.7488 -12.8068 -1.9726 24 6 5.7788 -11.8691 -2.0058 25 7 5.1061 -11.6094 -3.1634 26 6 3.6290 -5.1961 0.6889 27 6 4.3690 -5.9260 1.6214 28 6 4.2671 -5.6283 2.9509 29 6 3.4383 -4.6015 3.3823 30 6 2.7046 -3.8644 2.4789 31 6 2.7927 -4.1503 1.1202 32 1 -0.4850 0.8401 0.0004 33 1 0.6241 -2.5567 -0.8903 34 1 0.6248 -2.5571 0.8896 35 1 2.3321 -4.0505 -2.1294 36 1 5.2398 -6.3261 -1.3704 37 1 4.2075 -5.7758 -2.7121 38 1 3.4505 -7.8552 -0.7649 39 1 5.2075 -8.5901 -2.2752 40 1 4.1747 -8.0396 -3.6163 41 1 2.4005 -9.6153 -2.8979 42 1 3.4328 -10.1663 -1.5567 43 1 6.6649 -13.8254 -5.1923 44 1 7.8574 -14.2768 -3.1019 45 1 7.2737 -13.0040 -1.0496 46 1 5.5294 -11.3241 -1.1073 47 1 5.0156 -6.7264 1.2932 48 1 4.8362 -6.1961 3.6721 49 1 3.3687 -4.3778 4.4365 50 1 2.0623 -3.0679 2.8245 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022024974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:03 Heat of formation + Delta-G solvation = 147.464500 kcal Electronic energy + Delta-G solvation = -31728.093969 eV Core-core repulsion = 27528.335068 eV Total energy + Delta-G solvation = -4199.758901 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.175 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.56496 -42.06749 -39.12962 -37.91936 -37.72532 -35.62484 -35.14130 -33.83627 -32.60098 -31.72765 -31.13236 -30.04801 -29.41238 -28.36592 -26.07803 -25.17877 -24.61962 -24.22509 -23.60739 -23.29337 -22.11135 -21.92993 -20.32533 -19.06126 -18.82049 -18.04607 -17.76673 -17.52652 -17.32744 -16.75854 -16.71238 -16.34566 -16.14133 -16.00628 -15.80055 -15.45007 -15.06108 -14.67738 -14.63632 -14.50750 -14.13268 -14.05898 -13.66591 -13.55374 -13.46333 -13.36854 -13.11884 -13.02218 -12.86009 -12.84010 -12.64595 -12.50734 -12.41740 -12.37411 -12.22168 -12.09667 -12.01562 -11.54944 -11.53973 -11.48887 -10.77122 -10.57455 -10.36124 -9.33070 -9.06529 -8.93437 -8.50840 -8.18295 -6.53766 -0.28142 0.10875 0.36227 0.90769 1.30012 1.34284 1.35796 1.44718 1.61913 1.87849 2.22742 2.38916 2.39253 2.93871 2.94967 3.13886 3.31144 3.52025 3.71996 3.74881 3.89655 3.94254 3.99740 4.04263 4.11548 4.15561 4.22443 4.30691 4.40784 4.45151 4.50370 4.66745 4.67444 4.72000 4.76340 4.83163 4.89791 4.91867 4.97733 5.00563 5.02695 5.10681 5.11338 5.15896 5.20119 5.39074 5.47227 5.51587 5.73171 5.80919 5.81533 5.92741 5.99210 6.10795 6.19755 6.42322 6.53775 6.60557 6.71213 7.18912 7.46735 8.70219 Molecular weight = 375.18amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.001633 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.993502 B =17142.392979 C =18441.152235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.253 3.747 10 N -0.471 5.471 11 C 0.058 3.942 12 C -0.187 4.187 13 C 0.155 3.845 14 N -0.687 5.687 15 C 0.076 3.924 16 C -0.018 4.018 17 C 0.147 3.853 18 N -0.292 5.292 19 N -0.350 5.350 20 C 0.180 3.820 21 C -0.113 4.113 22 C -0.061 4.061 23 C -0.127 4.127 24 C 0.047 3.953 25 N -0.391 5.391 26 C -0.118 4.118 27 C -0.075 4.075 28 C -0.150 4.150 29 C -0.108 4.108 30 C -0.147 4.147 31 C 0.070 3.930 32 H 0.272 0.728 33 H 0.030 0.970 34 H 0.018 0.982 35 H 0.164 0.836 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.350 0.650 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.167 0.833 44 H 0.187 0.813 45 H 0.199 0.801 46 H 0.199 0.801 47 H 0.145 0.855 48 H 0.154 0.846 49 H 0.142 0.858 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.718 -28.473 2.623 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.593 4.593 8 H 0.070 0.930 9 C 0.133 3.867 10 N -0.150 5.150 11 C -0.071 4.071 12 C -0.195 4.195 13 C 0.026 3.974 14 N -0.319 5.319 15 C -0.054 4.054 16 C -0.058 4.058 17 C -0.117 4.117 18 N -0.130 5.130 19 N -0.195 5.195 20 C -0.070 4.070 21 C -0.134 4.134 22 C -0.085 4.085 23 C -0.148 4.148 24 C -0.074 4.074 25 N -0.071 5.071 26 C -0.123 4.123 27 C -0.094 4.094 28 C -0.169 4.169 29 C -0.127 4.127 30 C -0.168 4.168 31 C -0.038 4.038 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.181 0.819 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.169 0.831 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.184 0.816 44 H 0.204 0.796 45 H 0.216 0.784 46 H 0.216 0.784 47 H 0.163 0.837 48 H 0.172 0.828 49 H 0.160 0.840 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.018 -27.590 0.656 31.910 hybrid contribution 0.679 1.295 1.111 1.836 sum 16.697 -26.295 1.767 31.199 Atomic orbital electron populations 1.70017 1.07406 1.28792 1.49591 1.25786 0.95779 1.02850 0.93723 0.85438 0.78342 0.77865 0.79078 1.19342 1.19907 1.19565 1.21493 0.93173 0.91288 1.53307 0.93042 1.19156 0.87300 0.82933 0.97278 1.44585 1.37106 1.28331 1.04956 1.21932 0.98378 0.95081 0.91738 1.20041 1.05668 1.02180 0.91591 1.19930 0.93656 0.86976 0.96816 1.60363 1.54125 1.02928 1.14492 1.21741 0.95176 0.90742 0.97768 1.19985 0.99367 0.89677 0.96789 1.25064 0.93724 0.98480 0.94440 1.74109 1.19821 1.12258 1.06845 1.74843 1.08368 1.11303 1.25035 1.22915 1.01214 0.99267 0.83563 1.20646 0.93906 0.96345 1.02498 1.21779 0.98100 0.98311 0.90314 1.21597 0.96708 0.94609 1.01883 1.22494 0.95159 1.01213 0.88530 1.43881 1.25587 1.26539 1.11090 1.19353 1.00980 0.98358 0.93583 1.20433 0.97974 0.98978 0.91978 1.20894 1.00978 0.99066 0.95947 1.21040 0.96590 0.95938 0.99179 1.20272 1.03787 1.02282 0.90432 1.18749 0.98647 0.97175 0.89217 0.91886 0.95181 0.96355 0.81878 0.93433 0.90793 0.83146 0.94197 0.92054 0.88030 0.86987 0.81576 0.79561 0.78447 0.78412 0.83734 0.82840 0.84025 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.99 13.29 21.45 0.28 -52.70 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.17 9.39 25.60 0.24 -30.93 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.25 13.39 5.76 85.64 0.49 13.88 16 10 N -0.47 -21.59 2.76 -520.00 -1.44 -23.02 16 11 C 0.06 2.27 11.19 83.00 0.93 3.20 16 12 C -0.19 -6.17 5.83 -18.63 -0.11 -6.28 16 13 C 0.15 3.78 6.22 85.56 0.53 4.31 16 14 N -0.69 -14.22 6.49 -517.92 -3.36 -17.58 16 15 C 0.08 1.33 5.67 86.30 0.49 1.82 16 16 C -0.02 -0.29 6.00 29.84 0.18 -0.11 16 17 C 0.15 3.19 7.39 137.71 1.02 4.21 16 18 N -0.29 -8.73 12.19 -49.68 -0.61 -9.34 16 19 N -0.35 -10.38 12.31 -55.40 -0.68 -11.07 16 20 C 0.18 3.82 7.92 134.06 1.06 4.88 16 21 C -0.11 -1.31 10.11 22.39 0.23 -1.08 16 22 C -0.06 -0.22 10.07 22.32 0.22 0.01 16 23 C -0.13 -0.27 9.98 22.08 0.22 -0.05 16 24 C 0.05 0.34 10.91 83.23 0.91 1.25 16 25 N -0.39 -6.72 2.95 -342.88 -1.01 -7.73 16 26 C -0.12 -4.06 6.35 -20.19 -0.13 -4.19 16 27 C -0.08 -1.97 10.05 22.23 0.22 -1.75 16 28 C -0.15 -3.69 9.97 22.03 0.22 -3.47 16 29 C -0.11 -3.22 10.01 22.30 0.22 -3.00 16 30 C -0.15 -5.79 10.00 22.37 0.22 -5.57 16 31 C 0.07 2.95 6.81 39.03 0.27 3.21 16 32 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.03 1.65 8.12 -2.39 -0.02 1.63 16 34 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.16 5.94 8.06 -2.91 -0.02 5.92 16 36 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.35 6.38 8.72 -89.69 -0.78 5.60 16 39 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.19 -0.78 8.06 -2.91 -0.02 -0.80 16 45 H 0.20 -1.19 8.06 -2.91 -0.02 -1.22 16 46 H 0.20 0.11 8.06 -2.91 -0.02 0.09 16 47 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 48 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 49 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 50 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -80.07 428.39 3.30 -76.78 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.18 Total: 17.31 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 7.90 Total: -18.13 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -6.81 Total: -121.43 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -80.07 3.30 -76.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022024974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.243 kcal (2) G-P(sol) polarization free energy of solvation -80.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds