Wall clock time and date at job start Tue Mar 31 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38155 * 120.35005 * 2 1 4 4 C 1.39660 * 118.49861 * 180.02562 * 3 2 1 5 5 N 1.38532 * 120.48122 * 180.02562 * 4 3 2 6 6 N 1.32912 * 119.03503 * 359.72541 * 4 3 2 7 7 C 1.32508 * 120.60789 * 0.54635 * 6 4 3 8 8 S 1.76201 * 119.18309 * 179.72143 * 7 6 4 9 9 C 1.81004 * 100.00021 * 359.72775 * 8 7 6 10 10 C 1.50693 * 109.47094 * 180.02562 * 9 8 7 11 11 O 1.21291 * 120.00084 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00312 * 179.97438 * 10 9 8 13 13 C 1.39926 * 120.00337 * 175.95852 * 12 10 9 14 14 C 1.38685 * 120.11636 * 34.42860 * 13 12 10 15 15 C 1.38219 * 120.02267 * 180.25169 * 14 13 12 16 16 C 1.38397 * 120.24812 * 359.73935 * 15 14 13 17 17 C 1.38079 * 120.23036 * 359.97438 * 16 15 14 18 18 C 1.38997 * 119.97715 * 0.02562 * 17 16 15 19 19 S 1.76203 * 120.12492 * 179.97438 * 18 17 16 20 20 C 1.76195 * 99.99710 * 6.86727 * 19 18 17 21 21 H 1.07993 * 120.00535 * 354.89210 * 20 19 18 22 22 C 1.38692 * 119.99924 * 174.89692 * 20 19 18 23 23 N 1.31655 * 120.00188 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99660 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47172 * 90.00276 * 24 22 20 26 26 H 1.48505 * 109.47019 * 210.00083 * 24 22 20 27 27 H 1.48499 * 109.47544 * 330.00014 * 24 22 20 28 28 N 1.32469 * 120.35676 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47365 * 269.98241 * 1 2 3 30 30 H 1.08999 * 109.47511 * 29.98086 * 1 2 3 31 31 H 1.08995 * 109.47061 * 149.98205 * 1 2 3 32 32 H 1.07999 * 120.74982 * 0.03836 * 3 2 1 33 33 H 0.97005 * 119.99858 * 359.97438 * 5 4 3 34 34 H 0.96996 * 120.00521 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47062 * 60.00177 * 9 8 7 36 36 H 1.09000 * 109.47068 * 300.00270 * 9 8 7 37 37 H 0.96998 * 119.99293 * 355.96745 * 12 10 9 38 38 H 1.08005 * 119.98535 * 359.97316 * 14 13 12 39 39 H 1.08003 * 119.87917 * 179.76915 * 15 14 13 40 40 H 1.08000 * 119.88035 * 179.97438 * 16 15 14 41 41 H 1.08002 * 120.01182 * 180.02562 * 17 16 15 42 42 H 0.97003 * 119.99687 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2050 1.1922 0.0000 4 6 3.6009 1.1471 -0.0005 5 7 4.3418 2.3176 0.0000 6 7 4.2081 -0.0352 0.0045 7 6 3.5019 -1.1564 -0.0009 8 16 4.3456 -2.7033 -0.0013 9 6 6.0610 -2.1256 -0.0018 10 6 6.9904 -3.3118 -0.0029 11 8 6.5377 -4.4370 -0.0038 12 7 8.3249 -3.1224 -0.0040 13 6 9.1875 -4.2209 0.0804 14 6 8.8437 -5.4234 -0.5188 15 6 9.6949 -6.5087 -0.4298 16 6 10.8946 -6.3998 0.2516 17 6 11.2500 -5.2058 0.8471 18 6 10.4011 -4.1083 0.7634 19 16 10.8504 -2.5829 1.5224 20 6 12.4938 -2.9659 2.0295 21 1 12.8805 -3.9656 1.8977 22 6 13.2908 -1.9836 2.5980 23 7 14.5186 -2.2699 2.9774 24 14 12.6222 -0.2542 2.8255 25 1 11.9710 -0.1463 4.1557 26 1 13.7372 0.7229 2.7394 27 1 11.6269 0.0356 1.7621 28 7 2.1764 -1.1431 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6831 2.1377 0.0006 33 1 3.8913 3.1767 0.0003 34 1 5.3110 2.2782 0.0000 35 1 6.2416 -1.5229 0.8881 36 1 6.2410 -1.5226 -0.8918 37 1 8.6871 -2.2246 -0.0631 38 1 7.9084 -5.5131 -1.0514 39 1 9.4231 -7.4452 -0.8942 40 1 11.5550 -7.2518 0.3178 41 1 12.1872 -5.1246 1.3776 42 1 15.0761 -1.5826 3.3746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022090387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:08 Heat of formation + Delta-G solvation = 42.746979 kcal Electronic energy + Delta-G solvation = -27328.188604 eV Core-core repulsion = 23332.700782 eV Total energy + Delta-G solvation = -3995.487822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.077 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.06936 -40.23157 -37.90657 -36.07322 -34.57575 -34.11666 -32.77147 -31.13070 -30.80415 -30.42648 -28.65412 -28.19034 -26.02522 -24.86224 -22.75824 -22.55106 -22.19069 -20.33660 -18.77244 -18.59263 -18.32989 -16.97080 -16.90587 -16.26089 -16.10275 -15.90945 -15.82954 -15.59839 -15.41383 -15.29384 -14.44117 -14.32713 -14.03653 -13.80042 -13.59019 -13.45184 -13.19358 -12.97937 -12.73850 -12.68140 -12.37316 -12.09379 -11.99572 -11.46199 -11.30917 -11.25399 -11.15985 -10.71611 -10.59769 -10.33500 -10.16264 -9.92450 -9.67300 -9.56174 -9.48555 -8.98434 -8.98110 -8.85286 -7.92185 -7.83067 -6.85135 -6.54775 -4.31234 0.60834 0.93890 1.08030 1.70164 1.80418 1.97001 2.62186 2.71200 3.00567 3.08087 3.17098 3.18538 3.35635 3.45974 3.90648 4.02204 4.31676 4.36891 4.38960 4.60179 4.72433 4.83588 4.85330 4.86492 4.98144 5.17433 5.19864 5.35141 5.48519 5.53111 5.58573 5.78745 5.92874 6.02234 6.11024 6.40584 6.45443 6.73606 6.76068 6.76611 6.98780 7.12597 7.22757 7.49757 7.54077 7.69014 7.82068 8.13002 8.27741 8.86420 10.52503 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.002371 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.320948 B =11806.997824 C =14376.447567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.215 3.785 3 C -0.306 4.306 4 C 0.455 3.545 5 N -0.835 5.835 6 N -0.591 5.591 7 C 0.329 3.671 8 S 0.097 5.903 9 C -0.152 4.152 10 C 0.530 3.470 11 O -0.513 6.513 12 N -0.651 5.651 13 C 0.123 3.877 14 C -0.103 4.103 15 C -0.140 4.140 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.079 4.079 19 S -0.055 6.055 20 C -0.533 4.533 21 H 0.111 0.889 22 C 0.099 3.901 23 N -0.864 5.864 24 Si 0.854 3.146 25 H -0.265 1.265 26 H -0.269 1.269 27 H -0.238 1.238 28 N -0.542 5.542 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.412 0.588 34 H 0.409 0.591 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.412 0.588 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.734 8.589 -7.742 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 C -0.338 4.338 4 C 0.206 3.794 5 N -0.379 5.379 6 N -0.321 5.321 7 C -0.048 4.048 8 S 0.332 5.668 9 C -0.304 4.304 10 C 0.315 3.685 11 O -0.389 6.389 12 N -0.296 5.296 13 C 0.022 3.978 14 C -0.124 4.124 15 C -0.163 4.163 16 C -0.133 4.133 17 C -0.145 4.145 18 C -0.196 4.196 19 S 0.197 5.803 20 C -0.679 4.679 21 H 0.129 0.871 22 C -0.112 4.112 23 N -0.498 5.498 24 Si 0.678 3.322 25 H -0.190 1.190 26 H -0.194 1.194 27 H -0.162 1.162 28 N -0.264 5.264 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.242 0.758 34 H 0.239 0.761 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.249 0.751 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.164 0.836 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.352 7.074 -7.372 25.489 hybrid contribution 1.308 2.841 0.152 3.131 sum -22.044 9.915 -7.220 25.226 Atomic orbital electron populations 1.20763 0.87785 1.03973 1.03687 1.21406 0.97176 0.87377 0.87064 1.21802 0.93300 1.00728 1.17923 1.18446 0.88498 0.86723 0.85737 1.42182 1.09972 1.04431 1.81302 1.68343 1.40115 0.97193 1.26464 1.25129 0.90433 0.96996 0.92212 1.86612 0.95371 0.95402 1.89401 1.23701 0.95827 1.01215 1.09629 1.19685 0.82504 0.89647 0.76658 1.90736 1.75833 1.24071 1.48259 1.43183 1.04750 1.09951 1.71723 1.17145 0.90865 0.88419 1.01388 1.20985 1.00143 0.91884 0.99432 1.20840 0.94996 0.98180 1.02297 1.21036 0.96609 0.97296 0.98375 1.21434 1.00652 0.91497 1.00898 1.21944 0.96597 1.00520 1.00502 1.82602 1.19068 1.12711 1.65961 1.22655 0.95356 1.02343 1.47556 0.87135 1.24794 0.94051 0.98943 0.93388 1.69921 1.06979 1.34906 1.38031 0.86825 0.80448 0.84056 0.80880 1.19001 1.19409 1.16155 1.68341 1.06997 1.29680 1.21399 0.89625 0.90233 0.89779 0.84201 0.75761 0.76103 0.85456 0.85686 0.75070 0.84896 0.86611 0.86631 0.83650 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.21 36.00 0.37 -0.25 16 2 C 0.22 2.08 6.81 -82.35 -0.56 1.52 16 3 C -0.31 -2.55 9.70 -39.08 -0.38 -2.93 16 4 C 0.45 4.32 7.82 -154.84 -1.21 3.11 16 5 N -0.84 -4.86 9.06 31.23 0.28 -4.58 16 6 N -0.59 -6.94 9.17 -12.68 -0.12 -7.06 16 7 C 0.33 4.26 7.85 -90.89 -0.71 3.55 16 8 S 0.10 1.27 21.38 -107.50 -2.30 -1.03 16 9 C -0.15 -1.80 5.29 36.00 0.19 -1.61 16 10 C 0.53 7.94 7.69 -10.99 -0.08 7.86 16 11 O -0.51 -9.06 13.28 5.55 0.07 -8.98 16 12 N -0.65 -10.27 5.03 -9.71 -0.05 -10.32 16 13 C 0.12 2.30 6.32 -83.45 -0.53 1.77 16 14 C -0.10 -1.83 8.70 -39.42 -0.34 -2.17 16 15 C -0.14 -2.32 10.04 -39.53 -0.40 -2.72 16 16 C -0.11 -1.97 10.03 -39.58 -0.40 -2.37 16 17 C -0.12 -2.46 9.26 -39.36 -0.36 -2.83 16 18 C -0.08 -1.65 6.12 -38.75 -0.24 -1.89 16 19 S -0.05 -1.23 18.50 -107.50 -1.99 -3.22 16 20 C -0.53 -14.11 9.62 30.90 0.30 -13.82 16 21 H 0.11 3.07 5.06 -52.49 -0.27 2.81 16 22 C 0.10 2.65 5.50 -17.46 -0.10 2.56 16 23 N -0.86 -24.27 13.97 55.49 0.78 -23.50 16 24 Si 0.85 19.33 27.73 -169.99 -4.71 14.61 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.24 -5.08 6.74 56.52 0.38 -4.70 16 28 N -0.54 -6.84 10.33 -9.75 -0.10 -6.94 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.41 1.20 8.84 -40.82 -0.36 0.84 16 34 H 0.41 2.22 8.95 -40.82 -0.37 1.85 16 35 H 0.13 1.42 8.11 -51.92 -0.42 1.00 16 36 H 0.12 1.26 8.11 -51.92 -0.42 0.84 16 37 H 0.41 5.82 7.95 -40.82 -0.32 5.49 16 38 H 0.13 2.29 6.19 -52.48 -0.32 1.97 16 39 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.15 3.23 4.95 -52.49 -0.26 2.97 16 42 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -32.74 385.37 -11.22 -43.96 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.43 Total: 11.46 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -4.46 Total: -10.22 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.79 Total: -52.39 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -4.29 Total: -4.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.74 -11.22 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022090387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.702 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds