Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38155 * 120.35005 * 2 1 4 4 C 1.39660 * 118.49861 * 180.02562 * 3 2 1 5 5 N 1.38532 * 120.48122 * 180.02562 * 4 3 2 6 6 N 1.32912 * 119.03503 * 359.72541 * 4 3 2 7 7 C 1.32508 * 120.60789 * 0.54635 * 6 4 3 8 8 S 1.76201 * 119.18309 * 179.72143 * 7 6 4 9 9 C 1.81004 * 100.00021 * 359.72775 * 8 7 6 10 10 C 1.50693 * 109.47094 * 180.02562 * 9 8 7 11 11 O 1.21291 * 120.00084 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00312 * 179.97438 * 10 9 8 13 13 C 1.39926 * 120.00337 * 175.95852 * 12 10 9 14 14 C 1.38685 * 120.11636 * 34.42860 * 13 12 10 15 15 C 1.38219 * 120.02267 * 180.25169 * 14 13 12 16 16 C 1.38397 * 120.24812 * 359.73935 * 15 14 13 17 17 C 1.38079 * 120.23036 * 359.97438 * 16 15 14 18 18 C 1.38997 * 119.97715 * 0.02562 * 17 16 15 19 19 S 1.76203 * 120.12492 * 179.97438 * 18 17 16 20 20 C 1.76195 * 99.99710 * 6.86727 * 19 18 17 21 21 H 1.07993 * 120.00535 * 354.89210 * 20 19 18 22 22 C 1.38692 * 119.99924 * 174.89692 * 20 19 18 23 23 N 1.31655 * 120.00188 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99660 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47172 * 90.00276 * 24 22 20 26 26 H 1.48505 * 109.47019 * 210.00083 * 24 22 20 27 27 H 1.48499 * 109.47544 * 330.00014 * 24 22 20 28 28 N 1.32469 * 120.35676 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47365 * 269.98241 * 1 2 3 30 30 H 1.08999 * 109.47511 * 29.98086 * 1 2 3 31 31 H 1.08995 * 109.47061 * 149.98205 * 1 2 3 32 32 H 1.07999 * 120.74982 * 0.03836 * 3 2 1 33 33 H 0.97005 * 119.99858 * 359.97438 * 5 4 3 34 34 H 0.96996 * 120.00521 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47062 * 60.00177 * 9 8 7 36 36 H 1.09000 * 109.47068 * 300.00270 * 9 8 7 37 37 H 0.96998 * 119.99293 * 355.96745 * 12 10 9 38 38 H 1.08005 * 119.98535 * 359.97316 * 14 13 12 39 39 H 1.08003 * 119.87917 * 179.76915 * 15 14 13 40 40 H 1.08000 * 119.88035 * 179.97438 * 16 15 14 41 41 H 1.08002 * 120.01182 * 180.02562 * 17 16 15 42 42 H 0.97003 * 119.99687 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2050 1.1922 0.0000 4 6 3.6009 1.1471 -0.0005 5 7 4.3418 2.3176 0.0000 6 7 4.2081 -0.0352 0.0045 7 6 3.5019 -1.1564 -0.0009 8 16 4.3456 -2.7033 -0.0013 9 6 6.0610 -2.1256 -0.0018 10 6 6.9904 -3.3118 -0.0029 11 8 6.5377 -4.4370 -0.0038 12 7 8.3249 -3.1224 -0.0040 13 6 9.1875 -4.2209 0.0804 14 6 8.8437 -5.4234 -0.5188 15 6 9.6949 -6.5087 -0.4298 16 6 10.8946 -6.3998 0.2516 17 6 11.2500 -5.2058 0.8471 18 6 10.4011 -4.1083 0.7634 19 16 10.8504 -2.5829 1.5224 20 6 12.4938 -2.9659 2.0295 21 1 12.8805 -3.9656 1.8977 22 6 13.2908 -1.9836 2.5980 23 7 14.5186 -2.2699 2.9774 24 14 12.6222 -0.2542 2.8255 25 1 11.9710 -0.1463 4.1557 26 1 13.7372 0.7229 2.7394 27 1 11.6269 0.0356 1.7621 28 7 2.1764 -1.1431 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6831 2.1377 0.0006 33 1 3.8913 3.1767 0.0003 34 1 5.3110 2.2782 0.0000 35 1 6.2416 -1.5229 0.8881 36 1 6.2410 -1.5226 -0.8918 37 1 8.6871 -2.2246 -0.0631 38 1 7.9084 -5.5131 -1.0514 39 1 9.4231 -7.4452 -0.8942 40 1 11.5550 -7.2518 0.3178 41 1 12.1872 -5.1246 1.3776 42 1 15.0761 -1.5826 3.3746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022090387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = 21.532062 kcal Electronic energy + Delta-G solvation = -27329.108552 eV Core-core repulsion = 23332.700782 eV Total energy + Delta-G solvation = -3996.407770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.077 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79314 -41.54898 -39.32500 -36.69914 -35.92149 -34.80277 -34.77208 -32.16018 -31.91208 -31.63522 -29.68549 -28.99038 -28.03563 -25.64905 -24.10253 -23.66634 -23.24158 -21.65425 -20.29057 -19.43447 -19.25001 -18.35780 -18.15793 -17.64957 -17.21793 -16.97337 -16.90641 -16.50545 -16.27797 -16.23640 -15.78377 -15.65264 -15.20523 -15.10565 -14.98330 -14.37307 -14.28936 -14.04252 -13.86952 -13.71727 -13.70344 -13.11096 -13.10857 -12.97793 -12.85467 -12.77748 -12.37118 -12.09957 -11.65208 -11.45938 -11.42205 -11.38117 -11.02742 -11.00227 -10.83545 -10.55955 -10.34071 -9.62566 -9.32188 -8.78151 -8.58977 -8.55014 -6.31243 -0.13794 0.00459 0.28168 0.37215 0.46332 0.89097 1.00204 1.29177 1.38156 1.38736 1.58651 1.99341 2.16424 2.43845 2.51198 2.71845 2.78227 2.90513 3.27439 3.43736 3.69818 3.94990 4.02319 4.08747 4.23682 4.28555 4.31877 4.41716 4.45566 4.60834 4.62076 4.78096 4.87131 4.98384 4.98977 5.29079 5.34268 5.40350 5.53731 5.65091 5.68713 5.80256 6.07380 6.19792 6.20745 6.25188 6.70032 6.83464 6.89105 7.13617 8.54474 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.002371 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.320948 B =11806.997824 C =14376.447567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.195 3.805 3 C -0.296 4.296 4 C 0.438 3.562 5 N -0.818 5.818 6 N -0.604 5.604 7 C 0.316 3.684 8 S 0.061 5.939 9 C -0.133 4.133 10 C 0.534 3.466 11 O -0.538 6.538 12 N -0.649 5.649 13 C 0.129 3.871 14 C -0.111 4.111 15 C -0.122 4.122 16 C -0.113 4.113 17 C -0.139 4.139 18 C -0.107 4.107 19 S -0.043 6.043 20 C -0.551 4.551 21 H 0.082 0.918 22 C 0.045 3.955 23 N -0.910 5.910 24 Si 0.912 3.088 25 H -0.263 1.263 26 H -0.261 1.261 27 H -0.217 1.217 28 N -0.569 5.569 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.176 0.824 33 H 0.427 0.573 34 H 0.412 0.588 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.420 0.580 38 H 0.142 0.858 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.119 0.881 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.441 10.494 -8.841 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 C -0.326 4.326 4 C 0.189 3.811 5 N -0.363 5.363 6 N -0.335 5.335 7 C -0.062 4.062 8 S 0.295 5.705 9 C -0.284 4.284 10 C 0.321 3.679 11 O -0.416 6.416 12 N -0.295 5.295 13 C 0.027 3.973 14 C -0.132 4.132 15 C -0.144 4.144 16 C -0.133 4.133 17 C -0.164 4.164 18 C -0.223 4.223 19 S 0.206 5.794 20 C -0.698 4.698 21 H 0.099 0.901 22 C -0.161 4.161 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.187 1.187 26 H -0.185 1.185 27 H -0.140 1.140 28 N -0.293 5.293 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.193 0.807 33 H 0.260 0.740 34 H 0.243 0.757 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.259 0.741 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.161 0.839 41 H 0.137 0.863 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.099 9.011 -8.500 28.890 hybrid contribution 2.020 2.140 0.406 2.971 sum -24.079 11.150 -8.095 27.742 Atomic orbital electron populations 1.20862 0.85347 1.04990 1.04584 1.22059 0.98835 0.87126 0.86850 1.22182 0.92938 1.01768 1.15741 1.18810 0.89509 0.86959 0.85871 1.42169 1.10146 1.04074 1.79862 1.68283 1.40432 0.97676 1.27111 1.24887 0.90760 0.96889 0.93648 1.86637 0.96439 0.97105 1.90277 1.23550 0.94207 0.99677 1.11005 1.20119 0.82235 0.90191 0.75387 1.90719 1.76182 1.25451 1.49233 1.43204 1.04879 1.09692 1.71734 1.17265 0.90208 0.89634 1.00193 1.21244 1.00690 0.91881 0.99395 1.21289 0.93625 0.99222 1.00270 1.21302 0.97521 0.96879 0.97600 1.21391 1.00002 0.93104 1.01877 1.21995 0.98025 0.99917 1.02337 1.82072 1.15988 1.14023 1.67351 1.22899 0.97898 1.01516 1.47517 0.90065 1.25721 0.94236 1.03164 0.92992 1.70028 1.08547 1.36479 1.39586 0.85945 0.80502 0.78949 0.81377 1.18726 1.18482 1.13963 1.68316 1.07078 1.31498 1.22421 0.88628 0.87499 0.90472 0.80676 0.73965 0.75704 0.84503 0.83675 0.74124 0.84043 0.82801 0.83915 0.86347 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.21 71.23 0.73 -0.22 16 2 C 0.20 3.42 6.81 42.44 0.29 3.71 16 3 C -0.30 -4.08 9.70 22.59 0.22 -3.86 16 4 C 0.44 7.28 7.82 133.20 1.04 8.32 16 5 N -0.82 -7.15 9.06 -55.11 -0.50 -7.65 16 6 N -0.60 -13.30 9.17 -194.02 -1.78 -15.08 16 7 C 0.32 7.99 7.85 180.44 1.42 9.40 16 8 S 0.06 1.58 21.38 -56.49 -1.21 0.38 16 9 C -0.13 -3.00 5.29 71.23 0.38 -2.62 16 10 C 0.53 15.39 7.69 87.65 0.67 16.07 16 11 O -0.54 -18.53 13.28 -3.06 -0.04 -18.57 16 12 N -0.65 -19.74 5.03 -303.00 -1.52 -21.26 16 13 C 0.13 4.69 6.32 38.31 0.24 4.93 16 14 C -0.11 -3.72 8.70 22.37 0.19 -3.53 16 15 C -0.12 -3.73 10.04 22.30 0.22 -3.51 16 16 C -0.11 -3.81 10.03 22.27 0.22 -3.59 16 17 C -0.14 -5.85 9.26 22.41 0.21 -5.64 16 18 C -0.11 -4.51 6.12 22.81 0.14 -4.37 16 19 S -0.04 -1.95 18.50 -56.49 -1.04 -3.00 16 20 C -0.55 -30.38 9.62 67.93 0.65 -29.73 16 21 H 0.08 4.84 5.06 -2.91 -0.01 4.83 16 22 C 0.05 2.49 5.50 84.83 0.47 2.95 16 23 N -0.91 -53.04 13.97 21.63 0.30 -52.74 16 24 Si 0.91 39.87 27.73 68.60 1.90 41.77 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 27 H -0.22 -8.65 6.74 99.48 0.67 -7.98 16 28 N -0.57 -14.03 10.33 -184.77 -1.91 -15.94 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.40 8.09 -2.39 -0.02 0.38 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.43 1.02 8.84 -92.70 -0.82 0.20 16 34 H 0.41 3.37 8.95 -92.71 -0.83 2.54 16 35 H 0.14 2.85 8.11 -2.40 -0.02 2.84 16 36 H 0.15 2.68 8.11 -2.40 -0.02 2.66 16 37 H 0.42 11.31 7.95 -92.71 -0.74 10.57 16 38 H 0.14 4.59 6.19 -2.91 -0.02 4.58 16 39 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 40 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.12 5.63 4.95 -2.91 -0.01 5.62 16 42 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -74.11 385.37 0.01 -74.10 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -1.29 Total: 29.65 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 7.10 Total: -11.67 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -5.41 Total: -112.67 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.04 Total: -18.57 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.90 Total: 41.77 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.25 Total: -2.62 kcal Total: -74.11 0.01 -74.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022090387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.636 kcal (2) G-P(sol) polarization free energy of solvation -74.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds