Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48500 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47120 * 300.00081 * 3 2 1 6 6 H 1.48493 * 109.47283 * 60.00137 * 3 2 1 7 7 C 1.37873 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00592 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99658 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47011 * 180.02562 * 9 7 2 11 11 C 1.46954 * 110.99862 * 169.99982 * 10 9 7 12 12 C 1.53053 * 109.36436 * 183.18699 * 11 10 9 13 13 N 1.46959 * 109.36486 * 301.60271 * 12 11 10 14 14 C 1.46906 * 110.99980 * 183.18661 * 13 12 11 15 15 C 1.50701 * 109.46922 * 169.99860 * 14 13 12 16 16 C 1.33604 * 125.11808 * 90.00383 * 15 14 13 17 17 C 1.37976 * 115.06186 * 179.73491 * 16 15 14 18 18 C 1.34783 * 114.70304 * 359.97438 * 17 16 15 19 19 C 1.47833 * 125.27061 * 179.97438 * 18 17 16 20 20 C 1.39575 * 120.14492 * 130.00224 * 19 18 17 21 21 C 1.37953 * 119.86264 * 179.97438 * 20 19 18 22 22 C 1.38386 * 120.16907 * 0.02562 * 21 20 19 23 23 C 1.38318 * 120.30237 * 359.97438 * 22 21 20 24 24 C 1.38098 * 120.13022 * 359.73803 * 23 22 21 25 25 Cl 1.73602 * 120.08359 * 180.27944 * 24 23 22 26 26 S 1.75857 * 125.11732 * 269.69415 * 15 14 13 27 27 C 1.46954 * 110.88345 * 59.31853 * 13 12 11 28 28 C 1.46959 * 110.99980 * 293.80215 * 10 9 7 29 29 H 0.96993 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47219 * 60.00564 * 9 7 2 31 31 H 1.08997 * 109.47214 * 300.00040 * 9 7 2 32 32 H 1.08998 * 109.49004 * 63.22641 * 11 10 9 33 33 H 1.08995 * 109.49076 * 303.15533 * 11 10 9 34 34 H 1.09003 * 109.49053 * 181.63301 * 12 11 10 35 35 H 1.09002 * 109.48631 * 61.56617 * 12 11 10 36 36 H 1.09000 * 109.47072 * 49.99697 * 14 13 12 37 37 H 1.08999 * 109.46871 * 289.99810 * 14 13 12 38 38 H 1.07999 * 122.46818 * 359.75153 * 16 15 14 39 39 H 1.08000 * 122.64486 * 180.02562 * 17 16 15 40 40 H 1.07990 * 120.07075 * 0.02562 * 20 19 18 41 41 H 1.07994 * 119.91440 * 180.02562 * 21 20 19 42 42 H 1.08000 * 119.84254 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.93151 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.49004 * 60.64235 * 27 13 12 45 45 H 1.08995 * 109.49076 * 180.71342 * 27 13 12 46 46 H 1.09002 * 109.48699 * 296.77644 * 28 10 9 47 47 H 1.08993 * 109.49142 * 56.82100 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5211 -4.8939 0.2377 12 6 2.5566 -6.0187 0.3093 13 7 3.3197 -6.0591 -0.9460 14 6 4.2744 -7.1757 -0.9460 15 6 4.8584 -7.3372 -2.3258 16 6 5.9629 -6.7300 -2.7688 17 6 6.3148 -7.0320 -4.0683 18 6 5.4872 -7.8955 -4.6897 19 6 5.6425 -8.3772 -6.0787 20 6 5.5865 -9.7437 -6.3571 21 6 5.7316 -10.1867 -7.6555 22 6 5.9328 -9.2799 -8.6813 23 6 5.9894 -7.9242 -8.4133 24 6 5.8398 -7.4666 -7.1189 25 17 5.9038 -5.7643 -6.7848 26 16 4.1929 -8.3593 -3.5927 27 6 4.0044 -4.7809 -1.1842 28 6 2.9689 -3.6561 -1.2558 29 1 -0.4849 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8896 32 1 0.8256 -5.0915 -0.5780 33 1 0.9735 -4.8433 1.1788 34 1 2.0487 -6.9718 0.4571 35 1 3.2357 -5.8352 1.1419 36 1 3.7604 -8.0932 -0.6592 37 1 5.0742 -6.9698 -0.2347 38 1 6.5382 -6.0528 -2.1548 39 1 7.1851 -6.6105 -4.5492 40 1 5.4292 -10.4528 -5.5579 41 1 5.6881 -11.2439 -7.8719 42 1 6.0461 -9.6326 -9.6958 43 1 6.1463 -7.2217 -9.2185 44 1 4.6999 -4.5833 -0.3685 45 1 4.5520 -4.8315 -2.1253 46 1 2.2898 -3.8396 -2.0884 47 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022914380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = 64.854407 kcal Electronic energy + Delta-G solvation = -28336.956322 eV Core-core repulsion = 24443.923786 eV Total energy + Delta-G solvation = -3893.032535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.107 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.77813 -39.01214 -37.60756 -36.66973 -35.17555 -32.86212 -32.25258 -31.18403 -30.43907 -29.84092 -27.66866 -25.99897 -24.39687 -23.30725 -23.07662 -22.48338 -22.21324 -21.30767 -19.38061 -19.00538 -17.73348 -16.84893 -16.29749 -15.95053 -15.91181 -15.61683 -15.14210 -14.72149 -14.54538 -14.27669 -14.18018 -14.17166 -13.86023 -13.51982 -13.41047 -13.36987 -12.81205 -12.56200 -12.31693 -12.10760 -12.01694 -11.87831 -11.78371 -11.67647 -11.64169 -11.16316 -11.03367 -10.84932 -10.79359 -10.72058 -10.61613 -10.36512 -10.26301 -9.71877 -9.58220 -9.18851 -9.14486 -8.52485 -8.44047 -8.39560 -8.11319 -7.20531 -6.01084 -4.02286 0.32815 0.78549 1.02237 1.59768 1.86272 1.92939 2.62101 3.26448 3.31876 3.39127 3.43910 4.14283 4.19889 4.40379 4.43847 4.52245 4.72359 4.84358 4.91179 4.97686 5.04820 5.15487 5.28249 5.34563 5.37435 5.42204 5.49644 5.53501 5.57728 5.75757 5.76969 5.82307 5.83911 5.92976 5.95867 6.03593 6.10231 6.14051 6.21327 6.34278 6.38643 6.44473 6.61611 6.72863 7.17431 7.18679 7.36943 7.39958 7.82104 8.11083 8.22971 8.57405 9.05501 9.61881 11.09867 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.002108 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.752832 B =13277.816578 C =14837.112101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.535 5.535 14 C 0.122 3.878 15 C -0.152 4.152 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.171 4.171 19 C -0.002 4.002 20 C -0.097 4.097 21 C -0.114 4.114 22 C -0.107 4.107 23 C -0.109 4.109 24 C -0.022 4.022 25 Cl -0.053 7.053 26 S 0.143 5.857 27 C 0.056 3.944 28 C 0.069 3.931 29 H 0.260 0.740 30 H -0.008 1.008 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.809 -23.778 -14.145 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.066 4.066 13 N -0.260 5.260 14 C -0.008 4.008 15 C -0.270 4.270 16 C -0.169 4.169 17 C -0.130 4.130 18 C -0.288 4.288 19 C -0.005 4.005 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.050 4.050 25 Cl -0.024 7.024 26 S 0.412 5.588 27 C -0.071 4.071 28 C -0.060 4.060 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.352 -24.445 -14.143 30.824 hybrid contribution 1.547 2.132 0.071 2.635 sum 13.899 -22.313 -14.072 29.817 Atomic orbital electron populations 1.69970 1.06045 1.26622 1.51163 1.24995 0.94867 0.99309 0.95513 0.86457 0.80067 0.83501 0.77492 1.19692 1.21111 1.21031 1.21188 0.93463 0.89953 1.49811 0.91904 1.19705 0.90060 0.87322 0.96105 1.62296 1.28100 1.02716 1.33255 1.22053 0.94697 0.89973 1.00509 1.22171 0.96089 0.98713 0.89600 1.62190 1.25352 1.03219 1.35218 1.20516 0.94726 0.95691 0.89831 1.24485 0.99316 1.03195 1.00015 1.19994 0.98117 1.02660 0.96117 1.20237 1.00584 0.97870 0.94347 1.22665 1.01756 1.07322 0.97086 1.17916 1.00581 0.92454 0.89527 1.21296 0.99327 0.93615 0.97424 1.21180 0.99372 1.00245 0.92377 1.21209 0.99335 0.92286 0.99790 1.21037 1.00534 0.96468 0.94766 1.21100 1.04193 0.85666 0.94073 1.98408 1.96509 1.11851 1.95632 1.84156 1.26461 1.44937 1.03255 1.22316 0.96198 0.88232 1.00400 1.21972 0.95437 0.97366 0.91232 0.93003 0.99068 0.95230 0.95118 0.90942 0.91153 0.94129 0.89979 0.92800 0.84258 0.84462 0.84902 0.85078 0.84955 0.84622 0.94374 0.90771 0.95374 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.37 8.47 -34.44 -0.29 -14.66 16 8 H 0.06 1.77 7.13 -52.48 -0.37 1.40 16 9 C 0.19 5.14 4.72 -4.97 -0.02 5.11 16 10 N -0.54 -11.89 4.70 -235.91 -1.11 -13.00 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 12 C 0.06 0.93 5.61 -3.76 -0.02 0.91 16 13 N -0.53 -7.94 4.70 -235.90 -1.11 -9.05 16 14 C 0.12 1.44 5.45 -4.97 -0.03 1.41 16 15 C -0.15 -1.78 5.45 -35.93 -0.20 -1.98 16 16 C -0.14 -1.57 8.50 -41.30 -0.35 -1.92 16 17 C -0.10 -1.10 8.67 -40.90 -0.35 -1.45 16 18 C -0.17 -1.89 5.51 -36.88 -0.20 -2.09 16 19 C 0.00 -0.02 5.75 -104.95 -0.60 -0.62 16 20 C -0.10 -0.79 9.77 -39.19 -0.38 -1.17 16 21 C -0.11 -0.73 10.03 -39.63 -0.40 -1.12 16 22 C -0.11 -0.68 10.04 -39.50 -0.40 -1.07 16 23 C -0.11 -0.85 9.82 -39.60 -0.39 -1.24 16 24 C -0.02 -0.22 6.33 -39.11 -0.25 -0.46 16 25 Cl -0.05 -0.58 26.47 -51.86 -1.37 -1.95 16 26 S 0.14 1.60 23.28 -107.50 -2.50 -0.90 16 27 C 0.06 0.92 5.36 -3.77 -0.02 0.90 16 28 C 0.07 1.40 5.43 -3.76 -0.02 1.38 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 37 H 0.05 0.61 8.12 -51.93 -0.42 0.18 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.14 1.41 7.53 -52.49 -0.40 1.01 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.14 6.12 -51.93 -0.32 0.83 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.09 1.86 6.79 -51.93 -0.35 1.51 16 LS Contribution 406.41 15.07 6.12 6.12 Total: -1.00 -31.34 406.41 -15.19 -46.53 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.89 Total: -2.73 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -4.04 Total: -15.60 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -1.48 Total: -48.34 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.50 Total: -0.90 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.37 Total: -1.95 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.34 -15.19 -46.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022914380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.384 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds