Wall clock time and date at job start Tue Mar 31 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48500 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47120 * 300.00081 * 3 2 1 6 6 H 1.48493 * 109.47283 * 60.00137 * 3 2 1 7 7 C 1.37873 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00592 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99658 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47011 * 180.02562 * 9 7 2 11 11 C 1.46954 * 110.99862 * 169.99982 * 10 9 7 12 12 C 1.53053 * 109.36436 * 183.18699 * 11 10 9 13 13 N 1.46959 * 109.36486 * 301.60271 * 12 11 10 14 14 C 1.46906 * 110.99980 * 183.18661 * 13 12 11 15 15 C 1.50701 * 109.46922 * 169.99860 * 14 13 12 16 16 C 1.33604 * 125.11808 * 90.00383 * 15 14 13 17 17 C 1.37976 * 115.06186 * 179.73491 * 16 15 14 18 18 C 1.34783 * 114.70304 * 359.97438 * 17 16 15 19 19 C 1.47833 * 125.27061 * 179.97438 * 18 17 16 20 20 C 1.39575 * 120.14492 * 130.00224 * 19 18 17 21 21 C 1.37953 * 119.86264 * 179.97438 * 20 19 18 22 22 C 1.38386 * 120.16907 * 0.02562 * 21 20 19 23 23 C 1.38318 * 120.30237 * 359.97438 * 22 21 20 24 24 C 1.38098 * 120.13022 * 359.73803 * 23 22 21 25 25 Cl 1.73602 * 120.08359 * 180.27944 * 24 23 22 26 26 S 1.75857 * 125.11732 * 269.69415 * 15 14 13 27 27 C 1.46954 * 110.88345 * 59.31853 * 13 12 11 28 28 C 1.46959 * 110.99980 * 293.80215 * 10 9 7 29 29 H 0.96993 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47219 * 60.00564 * 9 7 2 31 31 H 1.08997 * 109.47214 * 300.00040 * 9 7 2 32 32 H 1.08998 * 109.49004 * 63.22641 * 11 10 9 33 33 H 1.08995 * 109.49076 * 303.15533 * 11 10 9 34 34 H 1.09003 * 109.49053 * 181.63301 * 12 11 10 35 35 H 1.09002 * 109.48631 * 61.56617 * 12 11 10 36 36 H 1.09000 * 109.47072 * 49.99697 * 14 13 12 37 37 H 1.08999 * 109.46871 * 289.99810 * 14 13 12 38 38 H 1.07999 * 122.46818 * 359.75153 * 16 15 14 39 39 H 1.08000 * 122.64486 * 180.02562 * 17 16 15 40 40 H 1.07990 * 120.07075 * 0.02562 * 20 19 18 41 41 H 1.07994 * 119.91440 * 180.02562 * 21 20 19 42 42 H 1.08000 * 119.84254 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.93151 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.49004 * 60.64235 * 27 13 12 45 45 H 1.08995 * 109.49076 * 180.71342 * 27 13 12 46 46 H 1.09002 * 109.48699 * 296.77644 * 28 10 9 47 47 H 1.08993 * 109.49142 * 56.82100 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5211 -4.8939 0.2377 12 6 2.5566 -6.0187 0.3093 13 7 3.3197 -6.0591 -0.9460 14 6 4.2744 -7.1757 -0.9460 15 6 4.8584 -7.3372 -2.3258 16 6 5.9629 -6.7300 -2.7688 17 6 6.3148 -7.0320 -4.0683 18 6 5.4872 -7.8955 -4.6897 19 6 5.6425 -8.3772 -6.0787 20 6 5.5865 -9.7437 -6.3571 21 6 5.7316 -10.1867 -7.6555 22 6 5.9328 -9.2799 -8.6813 23 6 5.9894 -7.9242 -8.4133 24 6 5.8398 -7.4666 -7.1189 25 17 5.9038 -5.7643 -6.7848 26 16 4.1929 -8.3593 -3.5927 27 6 4.0044 -4.7809 -1.1842 28 6 2.9689 -3.6561 -1.2558 29 1 -0.4849 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5570 0.8896 32 1 0.8256 -5.0915 -0.5780 33 1 0.9735 -4.8433 1.1788 34 1 2.0487 -6.9718 0.4571 35 1 3.2357 -5.8352 1.1419 36 1 3.7604 -8.0932 -0.6592 37 1 5.0742 -6.9698 -0.2347 38 1 6.5382 -6.0528 -2.1548 39 1 7.1851 -6.6105 -4.5492 40 1 5.4292 -10.4528 -5.5579 41 1 5.6881 -11.2439 -7.8719 42 1 6.0461 -9.6326 -9.6958 43 1 6.1463 -7.2217 -9.2185 44 1 4.6999 -4.5833 -0.3685 45 1 4.5520 -4.8315 -2.1253 46 1 2.2898 -3.8396 -2.0884 47 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022914380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:56 Heat of formation + Delta-G solvation = 47.621739 kcal Electronic energy + Delta-G solvation = -28337.703586 eV Core-core repulsion = 24443.923786 eV Total energy + Delta-G solvation = -3893.779800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.107 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.48423 -40.23344 -38.60089 -37.40820 -36.65593 -34.66832 -33.32375 -31.87459 -31.75421 -31.03204 -29.19628 -27.32918 -25.73302 -24.63049 -23.91223 -23.53969 -23.03410 -22.91768 -20.68287 -19.98577 -18.54145 -18.45279 -17.55408 -17.30172 -16.65945 -16.48673 -16.30810 -16.05952 -15.85267 -15.68975 -15.38335 -15.12828 -15.00371 -14.82166 -14.56666 -14.18498 -14.09319 -13.77066 -13.59974 -13.32119 -13.17737 -13.05182 -12.80883 -12.71992 -12.65024 -12.46805 -12.37909 -12.32640 -12.27030 -12.13392 -11.92556 -11.80174 -11.60767 -11.48413 -11.19317 -10.64527 -10.26892 -9.81793 -9.42768 -9.35176 -9.11443 -9.02862 -8.22795 -6.33121 -0.39719 0.18667 0.25774 0.80140 1.07919 1.16931 1.39054 1.39328 1.53222 1.78001 2.38250 2.67348 2.99492 3.09283 3.28281 3.51851 3.78941 3.83663 3.97656 4.06169 4.12457 4.19542 4.32992 4.35657 4.36813 4.44890 4.47433 4.53395 4.58835 4.63603 4.66568 4.73008 4.84869 4.87912 4.95470 5.00820 5.03790 5.11727 5.19296 5.21482 5.25929 5.30442 5.33882 5.42638 5.54860 5.61884 5.81099 5.97322 6.02487 6.05522 6.31417 6.60420 6.82728 7.36570 8.88754 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.002108 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.752832 B =13277.816578 C =14837.112101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.053 3.947 12 C 0.072 3.928 13 N -0.546 5.546 14 C 0.126 3.874 15 C -0.167 4.167 16 C -0.138 4.138 17 C -0.112 4.112 18 C -0.166 4.166 19 C -0.028 4.028 20 C -0.103 4.103 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.117 4.117 24 C -0.039 4.039 25 Cl -0.074 7.074 26 S 0.141 5.859 27 C 0.074 3.926 28 C 0.071 3.929 29 H 0.265 0.735 30 H -0.043 1.043 31 H 0.006 0.994 32 H 0.018 0.982 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.148 0.852 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.008 0.992 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.542 -25.675 -15.006 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.267 5.267 11 C -0.076 4.076 12 C -0.055 4.055 13 N -0.271 5.271 14 C -0.002 4.002 15 C -0.286 4.286 16 C -0.169 4.169 17 C -0.143 4.143 18 C -0.284 4.284 19 C -0.030 4.030 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.135 4.135 24 C -0.068 4.068 25 Cl -0.045 7.045 26 S 0.410 5.590 27 C -0.055 4.055 28 C -0.057 4.057 29 H 0.073 0.927 30 H -0.025 1.025 31 H 0.024 0.976 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.166 0.834 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.027 0.973 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.100 -26.374 -15.000 33.457 hybrid contribution 0.984 2.591 0.214 2.780 sum 15.084 -23.783 -14.786 31.809 Atomic orbital electron populations 1.70097 1.07748 1.27867 1.51792 1.25946 0.95788 1.03292 0.94789 0.85314 0.78945 0.78463 0.77781 1.18703 1.20445 1.20174 1.21465 0.93548 0.91021 1.49988 0.91956 1.19359 0.90100 0.89079 0.93275 1.62241 1.27210 1.03148 1.34078 1.22184 0.95782 0.89548 1.00038 1.22097 0.95302 0.98347 0.89784 1.62127 1.26407 1.03254 1.35320 1.20555 0.94543 0.94904 0.90203 1.24513 0.99750 1.04041 1.00260 1.20138 0.98087 1.02448 0.96262 1.20327 1.01043 0.98446 0.94475 1.22877 1.01151 1.06732 0.97615 1.18072 1.02425 0.93505 0.89044 1.21518 0.99128 0.92877 0.98738 1.21574 0.97704 1.01889 0.91513 1.21622 0.97453 0.91431 1.01353 1.21308 1.00281 0.97712 0.94224 1.21284 1.05748 0.84666 0.95089 1.98393 1.96722 1.13581 1.95800 1.84084 1.26636 1.44961 1.03345 1.22060 0.94625 0.87678 1.01095 1.21932 0.95659 0.98381 0.89752 0.92654 1.02548 0.97575 0.96380 0.90712 0.87928 0.93625 0.88133 0.91591 0.83550 0.84184 0.83977 0.82063 0.81843 0.83404 0.94045 0.89801 0.97327 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.52 -30.53 8.47 25.60 0.22 -30.31 16 8 H 0.06 3.58 7.13 -2.91 -0.02 3.56 16 9 C 0.21 11.62 4.72 85.56 0.40 12.03 16 10 N -0.54 -24.63 4.70 -900.28 -4.23 -28.86 16 11 C 0.05 1.98 5.61 86.31 0.48 2.47 16 12 C 0.07 2.03 5.61 86.31 0.48 2.52 16 13 N -0.55 -15.42 4.70 -900.27 -4.23 -19.65 16 14 C 0.13 2.70 5.45 85.56 0.47 3.17 16 15 C -0.17 -3.71 5.45 24.63 0.13 -3.58 16 16 C -0.14 -3.02 8.50 21.16 0.18 -2.84 16 17 C -0.11 -2.44 8.67 21.41 0.19 -2.26 16 18 C -0.17 -3.60 5.51 24.02 0.13 -3.46 16 19 C -0.03 -0.54 5.75 -20.08 -0.12 -0.65 16 20 C -0.10 -1.49 9.77 22.52 0.22 -1.27 16 21 C -0.11 -1.06 10.03 22.24 0.22 -0.84 16 22 C -0.10 -0.96 10.04 22.32 0.22 -0.73 16 23 C -0.12 -1.64 9.82 22.26 0.22 -1.42 16 24 C -0.04 -0.76 6.33 22.58 0.14 -0.62 16 25 Cl -0.07 -1.64 26.47 -2.72 -0.07 -1.71 16 26 S 0.14 3.02 23.28 -56.49 -1.31 1.70 16 27 C 0.07 2.36 5.36 86.31 0.46 2.82 16 28 C 0.07 2.99 5.43 86.31 0.47 3.46 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H -0.04 -2.65 8.12 -2.39 -0.02 -2.67 16 31 H 0.01 0.37 8.03 -2.39 -0.02 0.35 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 2.72 8.07 -2.39 -0.02 2.70 16 34 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.80 8.03 -2.39 -0.02 1.78 16 37 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.14 2.90 7.53 -2.91 -0.02 2.87 16 40 H 0.14 1.68 8.06 -2.92 -0.02 1.66 16 41 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 42 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 43 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 2.54 6.12 -2.39 -0.01 2.52 16 46 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.07 2.96 6.79 -2.39 -0.02 2.95 16 Total: -1.00 -70.02 406.41 -1.58 -71.60 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.97 Total: 7.99 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 4.99 Total: -21.07 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -8.18 Total: -105.86 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.31 Total: 1.70 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.07 Total: -1.71 kcal Total: -70.02 -1.58 -71.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022914380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.221 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds