Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29021 * 124.91978 * 2 1 4 4 C 1.31780 * 117.12718 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.75026 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46953 * 305.02680 * 5 4 3 7 7 N 1.46506 * 109.46684 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99873 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99754 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.00137 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.47300 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.46919 * 179.97438 * 11 10 8 13 13 C 1.39876 * 126.04030 * 90.02345 * 12 11 10 14 14 C 1.50702 * 125.89784 * 359.95942 * 13 12 11 15 15 N 1.30837 * 108.20267 * 179.97438 * 13 12 11 16 16 N 1.40086 * 108.20450 * 359.97438 * 15 13 12 17 17 C 1.46495 * 126.03537 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47271 * 90.02834 * 17 16 15 19 19 H 1.07998 * 119.99792 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00084 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99686 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00025 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47079 * 89.99916 * 22 20 18 24 24 H 1.48503 * 109.46874 * 209.99755 * 22 20 18 25 25 H 1.48502 * 109.47230 * 330.00009 * 22 20 18 26 26 C 1.34947 * 107.92409 * 359.76271 * 16 15 13 27 27 C 1.50702 * 126.12637 * 180.23721 * 26 16 15 28 28 C 1.33632 * 114.49933 * 0.23188 * 4 3 2 29 29 S 1.70979 * 124.91352 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47136 * 90.00040 * 1 2 3 31 31 H 1.08998 * 109.47409 * 210.00346 * 1 2 3 32 32 H 1.09002 * 109.47171 * 330.00355 * 1 2 3 33 33 H 1.09000 * 109.46974 * 185.02428 * 5 4 3 34 34 H 1.09001 * 109.46547 * 65.02519 * 5 4 3 35 35 H 1.09000 * 109.47486 * 60.00062 * 6 5 4 36 36 H 1.09001 * 109.47362 * 299.99339 * 6 5 4 37 37 H 0.96995 * 120.00050 * 359.72237 * 7 6 5 38 38 H 1.09004 * 109.47043 * 299.99732 * 10 8 7 39 39 H 1.09000 * 109.46978 * 59.99653 * 10 8 7 40 40 H 1.09000 * 109.46497 * 299.99731 * 11 10 8 41 41 H 1.08987 * 109.47025 * 59.99846 * 11 10 8 42 42 H 1.08990 * 109.47244 * 89.99698 * 14 13 12 43 43 H 1.09003 * 109.46741 * 209.99987 * 14 13 12 44 44 H 1.08998 * 109.47039 * 329.99344 * 14 13 12 45 45 H 1.09000 * 109.47290 * 210.02936 * 17 16 15 46 46 H 1.08999 * 109.47436 * 330.02658 * 17 16 15 47 47 H 0.97003 * 119.99516 * 180.02562 * 21 20 18 48 48 H 1.08995 * 109.47185 * 270.17312 * 27 26 16 49 49 H 1.09005 * 109.46834 * 30.17295 * 27 26 16 50 50 H 1.08992 * 109.47074 * 150.17106 * 27 26 16 51 51 H 1.08006 * 126.04349 * 179.77015 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8792 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.2335 2.9494 -1.1820 7 7 5.1862 4.0623 -1.1827 8 6 5.1152 5.0095 -2.1390 9 8 4.2629 4.9401 -2.9991 10 6 6.0948 6.1546 -2.1395 11 6 5.7976 7.0795 -3.3216 12 6 6.7768 8.2249 -3.3216 13 6 8.0158 8.2484 -3.9704 14 6 8.6047 7.1302 -4.7914 15 7 8.5754 9.4086 -3.7410 16 7 7.7086 10.1615 -2.9384 17 6 7.9499 11.5209 -2.4488 18 6 7.4135 12.5163 -3.4450 19 1 6.9397 12.1708 -4.3519 20 6 7.5265 13.8681 -3.1981 21 7 7.0578 14.7367 -4.0673 22 14 8.3453 14.4657 -1.6291 23 1 9.8010 14.6396 -1.8657 24 1 7.7509 15.7651 -1.2245 25 1 8.1350 13.4676 -0.5498 26 6 6.6100 9.4150 -2.6998 27 6 5.4134 9.8308 -1.8834 28 6 3.9354 -0.4007 -0.0039 29 16 2.4856 -1.4021 0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 5.5449 1.6351 -0.0894 34 1 4.4369 2.5832 0.9312 35 1 3.2193 3.3388 -1.0925 36 1 4.3274 2.3906 -2.1131 37 1 5.8653 4.1199 -0.4926 38 1 6.0012 6.7132 -1.2082 39 1 7.1089 5.7652 -2.2293 40 1 5.8915 6.5206 -4.2526 41 1 4.7836 7.4688 -3.2322 42 1 8.2985 7.2429 -5.8313 43 1 9.6922 7.1659 -4.7269 44 1 8.2494 6.1731 -4.4096 45 1 7.4463 11.6573 -1.4918 46 1 9.0212 11.6763 -2.3209 47 1 7.1377 15.6877 -3.8938 48 1 5.5695 9.5513 -0.8415 49 1 5.2827 10.9106 -1.9543 50 1 4.5226 9.3312 -2.2640 51 1 4.9545 -0.7583 -0.0078 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022956563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = 56.239292 kcal Electronic energy + Delta-G solvation = -30208.384098 eV Core-core repulsion = 26042.394665 eV Total energy + Delta-G solvation = -4165.989434 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.167 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.69513 -40.49603 -39.59613 -35.74097 -34.42954 -33.41785 -33.27085 -32.47797 -30.91312 -30.13775 -29.24927 -28.61611 -26.88642 -26.08575 -24.78478 -23.42596 -22.57919 -21.83311 -20.55106 -20.07445 -18.85375 -18.66643 -18.06519 -17.12488 -16.95952 -16.39794 -16.02074 -15.68777 -15.41573 -15.31088 -14.70443 -14.63582 -14.23028 -14.11604 -13.79305 -13.67902 -13.50248 -13.18925 -13.17881 -12.88470 -12.71774 -12.65891 -12.58471 -12.34033 -12.27417 -12.18589 -12.02637 -11.96888 -11.87073 -11.60028 -11.50384 -11.27041 -10.95859 -10.74476 -10.72134 -10.22403 -10.11844 -9.90065 -9.88478 -9.67778 -9.64679 -9.23951 -9.19092 -8.78872 -8.22422 -7.50413 -6.26704 -4.29968 0.20840 0.86036 1.22752 2.25460 2.64375 2.68778 3.01340 3.14523 3.20186 3.21857 3.37077 3.50745 3.56429 4.20673 4.36676 4.49686 4.60150 4.72108 4.78398 4.84385 4.94226 5.00613 5.03233 5.10905 5.18412 5.25409 5.32079 5.35336 5.36188 5.58574 5.61189 5.64033 5.72262 5.78614 5.84918 5.93807 5.94908 5.97841 6.02145 6.21930 6.22982 6.34036 6.37055 6.47311 6.52217 6.82554 6.94967 7.26056 7.28640 7.34700 7.43843 7.86982 8.17624 8.31209 8.60560 8.79090 9.28447 10.85824 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.001320 C = 0.001284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.155308 B =21205.070464 C =21804.700526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.054 3.946 3 N -0.469 5.469 4 C 0.076 3.924 5 C -0.055 4.055 6 C 0.128 3.872 7 N -0.739 5.739 8 C 0.513 3.487 9 O -0.537 6.537 10 C -0.133 4.133 11 C -0.012 4.012 12 C -0.265 4.265 13 C 0.054 3.946 14 C -0.064 4.064 15 N -0.294 5.294 16 N -0.325 5.325 17 C 0.230 3.770 18 C -0.542 4.542 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.886 5.886 22 Si 0.874 3.126 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.265 1.265 26 C 0.097 3.903 27 C -0.093 4.093 28 C -0.259 4.259 29 S 0.116 5.884 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.400 0.600 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.269 0.731 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -33.930 12.726 37.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.224 4.224 3 N -0.184 5.184 4 C -0.056 4.056 5 C -0.096 4.096 6 C 0.003 3.997 7 N -0.392 5.392 8 C 0.300 3.700 9 O -0.413 6.413 10 C -0.173 4.173 11 C -0.051 4.051 12 C -0.277 4.277 13 C -0.111 4.111 14 C -0.123 4.123 15 N -0.118 5.118 16 N -0.105 5.105 17 C 0.111 3.889 18 C -0.580 4.580 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.523 5.523 22 Si 0.700 3.300 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.189 1.189 26 C -0.034 4.034 27 C -0.152 4.152 28 C -0.398 4.398 29 S 0.370 5.630 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.234 0.766 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.197 -33.435 11.900 36.424 hybrid contribution 0.780 0.778 1.233 1.654 sum -7.418 -32.657 13.134 35.972 Atomic orbital electron populations 1.20489 0.84955 1.04381 1.04220 1.27097 1.01936 0.90803 1.02576 1.66079 1.04417 1.31644 1.16258 1.19993 0.90054 0.93812 1.01739 1.20364 0.96286 0.93020 0.99899 1.21170 0.93955 0.87068 0.97466 1.46074 1.35755 1.26025 1.31353 1.21038 0.85387 0.83023 0.80521 1.90710 1.37000 1.76507 1.37116 1.21743 0.98550 0.94647 1.02338 1.19408 0.97032 0.92211 0.96426 1.19370 0.99193 0.97268 1.11837 1.21978 0.94364 0.94637 1.00096 1.20031 1.00321 0.93785 0.98167 1.77268 1.17687 1.03917 1.12913 1.48781 1.11973 1.13293 1.36409 1.19961 0.98432 0.74947 0.95564 1.21180 1.40228 0.89859 1.06720 0.90142 1.24817 0.94733 0.96261 0.96706 1.69880 1.44971 1.02160 1.35252 0.86887 0.80441 0.79036 0.83617 1.19626 1.20527 1.18941 1.20757 0.91050 0.91616 0.99931 1.20432 0.93466 1.03512 0.97759 1.26836 1.03351 0.95718 1.13876 1.84034 0.97823 1.12797 1.68327 0.89288 0.90002 0.89029 0.89456 0.89282 0.90520 0.91713 0.76629 0.89035 0.89016 0.91184 0.91256 0.91228 0.91603 0.91365 0.93513 0.93733 0.92117 0.91271 0.89914 0.90394 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.46 36.01 0.38 0.04 16 2 C 0.05 0.39 7.39 -13.46 -0.10 0.29 16 3 N -0.47 -4.32 10.34 -8.06 -0.08 -4.41 16 4 C 0.08 0.59 6.08 -84.23 -0.51 0.08 16 5 C -0.06 -0.34 5.82 -27.88 -0.16 -0.50 16 6 C 0.13 1.13 5.58 -4.04 -0.02 1.10 16 7 N -0.74 -6.26 5.56 -60.29 -0.33 -6.60 16 8 C 0.51 6.09 7.83 -10.99 -0.09 6.00 16 9 O -0.54 -8.66 15.98 5.55 0.09 -8.57 16 10 C -0.13 -1.47 5.68 -27.88 -0.16 -1.63 16 11 C -0.01 -0.17 4.45 -27.88 -0.12 -0.29 16 12 C -0.26 -4.69 5.35 -105.05 -0.56 -5.25 16 13 C 0.05 1.02 7.22 -82.40 -0.59 0.42 16 14 C -0.06 -0.91 10.12 36.01 0.36 -0.54 16 15 N -0.29 -6.67 12.58 33.67 0.42 -6.25 16 16 N -0.33 -7.43 3.60 -58.32 -0.21 -7.64 16 17 C 0.23 5.55 4.88 -5.20 -0.03 5.53 16 18 C -0.54 -15.29 9.94 -34.44 -0.34 -15.63 16 19 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 22 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 26 C 0.10 1.90 6.93 -82.26 -0.57 1.33 16 27 C -0.09 -1.51 9.68 36.01 0.35 -1.16 16 28 C -0.26 -1.59 11.07 29.12 0.32 -1.27 16 29 S 0.12 0.65 23.18 -107.50 -2.49 -1.84 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.35 8.03 -51.93 -0.42 -0.07 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.15 8.47 -40.82 -0.35 1.80 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 41 H 0.07 1.05 7.09 -51.94 -0.37 0.68 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.79 7.92 -51.93 -0.41 0.37 16 45 H 0.05 1.05 6.73 -51.93 -0.35 0.70 16 46 H 0.04 1.08 7.57 -51.93 -0.39 0.68 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 50 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 51 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 439.86 15.07 6.63 6.63 Total: -1.00 -36.50 439.86 -9.95 -46.44 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.13 Total: 1.73 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.94 Total: -9.36 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.57 Total: -50.60 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.49 Total: -1.84 kcal Total LS contribution 6.63 Total: 6.63 kcal Total: -36.50 -9.95 -46.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022956563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.681 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds