Wall clock time and date at job start Tue Mar 31 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86807 * 120.00057 * 2 1 4 4 H 1.48502 * 109.46752 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47165 * 300.00160 * 3 2 1 6 6 H 1.48495 * 109.46903 * 60.00412 * 3 2 1 7 7 C 1.38634 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00816 * 179.97438 * 7 2 1 9 9 O 1.34819 * 119.99313 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99552 * 174.64117 * 9 7 2 11 11 C 1.38910 * 120.00101 * 354.40233 * 10 9 7 12 12 C 1.38004 * 120.00116 * 179.97438 * 11 10 9 13 13 C 1.38915 * 120.00200 * 0.25213 * 12 11 10 14 14 N 1.39989 * 120.00652 * 179.72406 * 13 12 11 15 15 C 1.34783 * 119.99730 * 34.71343 * 14 13 12 16 16 O 1.21285 * 119.99640 * 5.45011 * 15 14 13 17 17 C 1.50701 * 119.99745 * 185.44529 * 15 14 13 18 18 C 1.52999 * 109.47477 * 300.00155 * 17 15 14 19 19 C 1.52998 * 109.47066 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.46827 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46902 * 299.99589 * 19 18 17 22 22 C 1.52999 * 109.46925 * 60.00325 * 21 19 18 23 23 H 1.09006 * 109.47168 * 179.97438 * 22 21 19 24 24 C 1.53003 * 109.47281 * 60.00039 * 22 21 19 25 25 C 1.53003 * 109.46816 * 299.99604 * 24 22 21 26 26 Cl 1.80303 * 109.47259 * 179.97438 * 25 24 22 27 27 C 1.52998 * 109.47140 * 60.00031 * 19 18 17 28 28 C 1.52996 * 109.46788 * 179.97438 * 17 15 14 29 29 C 1.52998 * 109.46775 * 60.00326 * 17 15 14 30 30 C 1.38932 * 119.99448 * 359.49102 * 13 12 11 31 31 C 1.38000 * 119.99469 * 0.51007 * 30 13 12 32 32 H 0.97003 * 119.99992 * 359.97438 * 1 2 3 33 33 H 1.08001 * 119.99620 * 359.97438 * 11 10 9 34 34 H 1.08002 * 119.99697 * 179.97438 * 12 11 10 35 35 H 0.97003 * 120.00558 * 214.71385 * 14 13 12 36 36 H 1.08997 * 109.46938 * 300.00458 * 18 17 15 37 37 H 1.09003 * 109.46795 * 60.00071 * 18 17 15 38 38 H 1.08996 * 109.47785 * 300.00211 * 21 19 18 39 39 H 1.09002 * 109.46951 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.47178 * 180.02562 * 24 22 21 41 41 H 1.08992 * 109.47563 * 59.99442 * 24 22 21 42 42 H 1.09006 * 109.46932 * 180.02562 * 27 19 18 43 43 H 1.08996 * 109.47458 * 60.00006 * 27 19 18 44 44 H 1.08999 * 109.47723 * 300.00307 * 28 17 15 45 45 H 1.09005 * 109.47014 * 60.00668 * 28 17 15 46 46 H 1.08996 * 109.47563 * 299.99513 * 29 17 15 47 47 H 1.09006 * 109.47556 * 60.00014 * 29 17 15 48 48 H 1.07995 * 119.99916 * 180.23040 * 30 13 12 49 49 H 1.07998 * 119.99764 * 179.72247 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8910 2.3965 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0697 -3.5041 -0.1141 11 6 3.4381 -3.4265 -0.3400 12 6 4.1851 -4.5812 -0.4548 13 6 3.5678 -5.8212 -0.3498 14 7 4.3245 -6.9925 -0.4720 15 6 5.5892 -7.0294 -0.0072 16 8 6.0383 -6.0831 0.6042 17 6 6.4449 -8.2464 -0.2473 18 6 5.7817 -9.4698 0.3885 19 6 6.6509 -10.7052 0.1454 20 1 6.1781 -11.5768 0.5979 21 6 6.8040 -10.9327 -1.3599 22 6 7.4673 -9.7093 -1.9957 23 1 7.5768 -9.8715 -3.0680 24 6 8.8466 -9.4938 -1.3695 25 6 8.6934 -9.2662 0.1357 26 17 10.3188 -9.0130 0.8739 27 6 8.0301 -10.4897 0.7716 28 6 7.8246 -8.0310 0.3780 29 6 6.5976 -8.4736 -1.7525 30 6 2.2001 -5.8988 -0.1185 31 6 1.4532 -4.7440 -0.0037 32 1 -0.4850 0.8401 0.0004 33 1 3.9173 -2.4624 -0.4257 34 1 5.2490 -4.5207 -0.6309 35 1 3.9389 -7.7777 -0.8912 36 1 5.6728 -9.3078 1.4609 37 1 4.7989 -9.6230 -0.0574 38 1 5.8215 -11.0862 -1.8061 39 1 7.4236 -11.8126 -1.5331 40 1 9.3189 -8.6220 -1.8221 41 1 9.4658 -10.3739 -1.5427 42 1 8.6495 -11.3697 0.5979 43 1 7.9210 -10.3276 1.8439 44 1 8.2970 -7.1595 -0.0753 45 1 7.7162 -7.8688 1.4504 46 1 5.6149 -8.6269 -2.1984 47 1 7.0702 -7.6020 -2.2056 48 1 1.7207 -6.8627 -0.0331 49 1 0.3892 -4.8043 0.1716 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:45 Heat of formation + Delta-G solvation = -70.546529 kcal Electronic energy + Delta-G solvation = -32287.683444 eV Core-core repulsion = 28011.452523 eV Total energy + Delta-G solvation = -4276.230921 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.139 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.22435 -39.81169 -38.58622 -36.53880 -36.16808 -34.14293 -33.20226 -33.14435 -32.48361 -32.11131 -30.23079 -27.99292 -26.53614 -26.38417 -25.34053 -23.73609 -22.27666 -22.04991 -21.83760 -21.16577 -19.78007 -18.38187 -17.98657 -17.46920 -16.70532 -16.38696 -15.27521 -15.18652 -14.94501 -14.92685 -14.79979 -14.50930 -14.32434 -14.17648 -14.08583 -13.78488 -13.61188 -13.42326 -13.31480 -13.26162 -12.92620 -12.86772 -12.53015 -11.77061 -11.71119 -11.68391 -11.59419 -11.57363 -11.46527 -11.42010 -11.31577 -11.07140 -11.00646 -10.81513 -10.68442 -10.61655 -10.41953 -10.39311 -10.10498 -9.71508 -9.56082 -9.17566 -8.71752 -8.23127 -6.95140 -6.45516 -4.02866 1.87106 2.04368 2.18106 2.81211 3.13480 3.15307 3.19716 3.21165 3.94054 3.96772 3.98173 4.12925 4.42050 4.45179 4.55521 4.57062 4.61719 4.63618 4.68154 4.74416 4.82194 4.84437 5.10405 5.15335 5.18061 5.23070 5.24674 5.36411 5.47776 5.50627 5.51325 5.53081 5.60959 5.64765 5.65206 5.70497 5.76181 5.77727 5.87030 5.97624 5.98258 6.12736 6.16114 6.31315 6.70622 6.83267 6.98188 7.08602 7.27831 7.42078 7.65246 7.76415 7.99715 8.33866 9.00541 9.69614 10.72450 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.001978 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.905336 B =14155.387096 C =15111.026411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.146 3.854 11 C -0.218 4.218 12 C -0.062 4.062 13 C 0.035 3.965 14 N -0.658 5.658 15 C 0.516 3.484 16 O -0.521 6.521 17 C -0.066 4.066 18 C -0.106 4.106 19 C -0.082 4.082 20 H 0.084 0.916 21 C -0.113 4.113 22 C -0.082 4.082 23 H 0.084 0.916 24 C -0.112 4.112 25 C 0.038 3.962 26 Cl -0.184 7.184 27 C -0.111 4.111 28 C -0.090 4.090 29 C -0.106 4.106 30 C -0.092 4.092 31 C -0.178 4.178 32 H 0.269 0.731 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.114 0.886 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.021 -25.260 -3.861 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.092 3.908 11 C -0.238 4.238 12 C -0.082 4.082 13 C -0.057 4.057 14 N -0.302 5.302 15 C 0.302 3.698 16 O -0.396 6.396 17 C -0.070 4.070 18 C -0.144 4.144 19 C -0.100 4.100 20 H 0.102 0.898 21 C -0.150 4.150 22 C -0.101 4.101 23 H 0.102 0.898 24 C -0.149 4.149 25 C 0.013 3.987 26 Cl -0.157 7.157 27 C -0.149 4.149 28 C -0.128 4.128 29 C -0.143 4.143 30 C -0.113 4.113 31 C -0.198 4.198 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.132 0.868 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.073 -24.333 -3.343 28.818 hybrid contribution 0.415 0.519 -0.118 0.674 sum 15.488 -23.814 -3.461 28.618 Atomic orbital electron populations 1.70053 1.05943 1.27575 1.46158 1.25288 0.95852 0.98845 0.96547 0.85651 0.79251 0.80349 0.78250 1.19023 1.20135 1.20119 1.21380 0.91856 0.80811 1.52521 0.88998 1.83988 1.34217 1.11458 1.78293 1.19415 0.90325 0.88076 0.92945 1.21091 0.94023 0.98675 1.10049 1.20664 0.99203 0.90607 0.97758 1.17229 0.90635 0.85387 1.12449 1.43230 1.13362 1.14149 1.59491 1.20389 0.82138 0.88607 0.78693 1.90742 1.72282 1.37433 1.39109 1.20700 0.95155 0.93759 0.97375 1.21638 0.98535 0.92720 1.01491 1.21087 0.94809 0.98029 0.96109 0.89785 1.21633 1.01229 0.97481 0.94688 1.21101 0.93908 0.94873 1.00169 0.89774 1.21890 0.97608 1.03242 0.92182 1.23518 0.82821 0.97501 0.94870 1.98727 1.33634 1.97615 1.85733 1.21888 0.96014 0.96440 1.00563 1.21617 0.92255 0.96145 1.02796 1.21642 1.00973 0.98589 0.93129 1.20353 0.92101 0.97456 1.01356 1.19993 0.99846 0.89557 1.10387 0.92068 0.85201 0.86443 0.76554 0.90786 0.90827 0.91110 0.91368 0.90533 0.90595 0.90590 0.90541 0.89885 0.89901 0.90722 0.90804 0.86792 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.39 -10.95 9.44 30.88 0.29 -10.66 16 8 H 0.09 2.43 5.28 -52.49 -0.28 2.15 16 9 O -0.18 -5.02 9.76 0.00 0.00 -5.02 16 10 C 0.15 3.54 6.65 -39.08 -0.26 3.28 16 11 C -0.22 -4.92 9.13 -39.42 -0.36 -5.28 16 12 C -0.06 -1.24 8.64 -39.42 -0.34 -1.58 16 13 C 0.04 0.61 6.25 -83.62 -0.52 0.08 16 14 N -0.66 -8.46 5.12 -9.82 -0.05 -8.51 16 15 C 0.52 6.89 6.21 -10.98 -0.07 6.82 16 16 O -0.52 -9.35 13.77 5.55 0.08 -9.27 16 17 C -0.07 -0.60 0.62 -155.66 -0.10 -0.69 16 18 C -0.11 -0.74 4.37 -26.73 -0.12 -0.86 16 19 C -0.08 -0.44 3.19 -90.62 -0.29 -0.73 16 20 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 21 C -0.11 -0.52 5.19 -26.73 -0.14 -0.66 16 22 C -0.08 -0.45 3.19 -90.59 -0.29 -0.74 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 24 C -0.11 -0.73 4.60 -26.73 -0.12 -0.85 16 25 C 0.04 0.30 1.04 -90.64 -0.09 0.20 16 26 Cl -0.18 -1.77 28.08 -51.86 -1.46 -3.22 16 27 C -0.11 -0.72 4.60 -26.73 -0.12 -0.84 16 28 C -0.09 -0.90 3.16 -26.76 -0.08 -0.98 16 29 C -0.11 -0.76 4.38 -26.71 -0.12 -0.88 16 30 C -0.09 -1.58 9.96 -39.41 -0.39 -1.97 16 31 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.13 2.96 5.70 -52.49 -0.30 2.66 16 34 H 0.12 2.30 6.52 -52.49 -0.34 1.96 16 35 H 0.40 3.69 7.69 -40.82 -0.31 3.37 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.43 7.45 -51.93 -0.39 0.04 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 45 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 46 H 0.07 0.47 7.70 -51.93 -0.40 0.07 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 49 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -32.72 389.75 -10.50 -43.22 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.07 Total: 5.15 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -3.61 Total: -19.42 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.71 Total: -33.03 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.46 Total: -3.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.72 -10.50 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.327 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds