Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.53005 * 109.46952 * 120.00128 * 2 1 3 5 5 H 1.09006 * 109.46869 * 294.89020 * 4 2 1 6 6 N 1.46904 * 109.46699 * 174.89935 * 4 2 1 7 7 C 1.46906 * 110.99680 * 155.45203 * 6 4 2 8 8 C 1.53003 * 109.46956 * 174.91982 * 7 6 4 9 9 H 1.09005 * 109.46663 * 305.00264 * 8 7 6 10 10 O 1.42897 * 109.46952 * 64.99808 * 8 7 6 11 11 C 1.52990 * 109.47267 * 185.00178 * 8 7 6 12 12 O 1.42903 * 109.47529 * 174.99890 * 11 8 7 13 13 C 1.35672 * 117.00165 * 179.97438 * 12 11 8 14 14 C 1.39315 * 119.81694 * 359.72977 * 13 12 11 15 15 C 1.36436 * 120.18228 * 179.76025 * 14 13 12 16 16 C 1.40832 * 119.81265 * 0.50546 * 15 14 13 17 17 C 1.41213 * 120.18238 * 179.72070 * 16 15 14 18 18 H 1.07998 * 120.00253 * 155.07358 * 17 16 15 19 19 C 1.39899 * 120.00066 * 335.07929 * 17 16 15 20 20 N 1.30878 * 119.99616 * 340.55265 * 19 17 16 21 21 Si 1.86792 * 120.00003 * 160.54838 * 19 17 16 22 22 H 1.48501 * 109.47133 * 94.98769 * 21 19 17 23 23 H 1.48505 * 109.47221 * 214.98682 * 21 19 17 24 24 H 1.48499 * 109.47247 * 334.98590 * 21 19 17 25 25 C 1.40833 * 119.64269 * 359.74983 * 16 15 14 26 26 C 1.36442 * 119.80984 * 359.97438 * 25 16 15 27 27 C 1.50691 * 109.47185 * 54.89416 * 4 2 1 28 28 C 1.33383 * 125.20704 * 259.99629 * 27 4 2 29 29 C 1.38424 * 114.92300 * 179.97438 * 28 27 4 30 30 C 1.33380 * 114.92211 * 0.02562 * 29 28 27 31 31 S 1.75884 * 125.20055 * 79.69751 * 27 4 2 32 32 H 1.08999 * 109.47374 * 300.00055 * 1 2 3 33 33 H 1.08995 * 109.47091 * 60.00445 * 1 2 3 34 34 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47374 * 239.99944 * 2 1 3 36 36 H 1.09000 * 109.46867 * 185.66715 * 3 2 1 37 37 H 1.09002 * 109.47129 * 305.65986 * 3 2 1 38 38 H 1.09002 * 109.47019 * 65.66697 * 3 2 1 39 39 H 1.00904 * 111.00201 * 31.49767 * 6 4 2 40 40 H 1.08998 * 109.47167 * 54.92288 * 7 6 4 41 41 H 1.08995 * 109.47045 * 294.91893 * 7 6 4 42 42 H 0.96700 * 114.00318 * 60.00230 * 10 8 7 43 43 H 1.09009 * 109.47313 * 295.00320 * 11 8 7 44 44 H 1.09005 * 109.47233 * 54.99831 * 11 8 7 45 45 H 1.08000 * 119.90897 * 0.02562 * 14 13 12 46 46 H 1.07998 * 120.09399 * 180.25351 * 15 14 13 47 47 H 0.96999 * 119.99985 * 180.02562 * 20 19 17 48 48 H 1.08004 * 120.09574 * 179.97438 * 25 16 15 49 49 H 1.08000 * 119.90833 * 179.97438 * 26 25 16 50 50 H 1.08004 * 122.53715 * 0.02562 * 28 27 4 51 51 H 1.08001 * 122.53669 * 180.02562 * 29 28 27 52 52 H 1.08003 * 125.20818 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7533 -0.1573 2.1369 6 7 3.5039 -0.8288 1.1892 7 6 4.0778 -0.9589 2.5353 8 6 5.5855 -1.1950 2.4262 9 1 5.7727 -2.0589 1.7884 10 8 6.2086 -0.0406 1.8594 11 6 6.1632 -1.4544 3.8189 12 8 7.5478 -1.7895 3.7055 13 6 8.2147 -2.0506 4.8578 14 6 7.5449 -1.9788 6.0773 15 6 8.2071 -2.2447 7.2402 16 6 9.5740 -2.5820 7.2062 17 6 10.2684 -2.8529 8.4056 18 1 11.1488 -3.4782 8.3904 19 6 9.8158 -2.3114 9.6135 20 7 9.0130 -1.2778 9.6072 21 14 10.3572 -3.0637 11.2353 22 1 11.5361 -2.3250 11.7546 23 1 9.2463 -2.9760 12.2170 24 1 10.7195 -4.4882 11.0237 25 6 10.2448 -2.6471 5.9697 26 6 9.5666 -2.3839 4.8154 27 6 1.4371 -2.1008 1.3141 28 6 0.3953 -2.4500 2.0703 29 6 0.0165 -3.7772 1.9645 30 6 0.7510 -4.5059 1.1228 31 16 1.9949 -3.4951 0.3985 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 3.1252 1.4442 -0.1015 37 1 1.5962 1.9848 -0.8350 38 1 1.7618 1.9262 0.9364 39 1 3.9044 -0.0426 0.6997 40 1 3.6142 -1.8017 3.0480 41 1 3.8930 -0.0445 3.0989 42 1 6.0829 0.7675 2.3755 43 1 6.0551 -0.5582 4.4299 44 1 5.6267 -2.2799 4.2868 45 1 6.4976 -1.7162 6.1019 46 1 7.6855 -2.1926 8.1844 47 1 8.6995 -0.9021 10.4447 48 1 11.2932 -2.9047 5.9351 49 1 10.0796 -2.4329 3.8663 50 1 -0.1146 -1.7500 2.7157 51 1 -0.8111 -4.1912 2.5213 52 1 0.6020 -5.5552 0.9145 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023677389.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = -63.348029 kcal Electronic energy + Delta-G solvation = -30943.545651 eV Core-core repulsion = 26805.503682 eV Total energy + Delta-G solvation = -4138.041969 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.166 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.69877 -39.93772 -38.83288 -37.84738 -37.25881 -35.21389 -34.55315 -31.85443 -31.51119 -31.03161 -30.36287 -27.91336 -27.33957 -26.49242 -25.11264 -23.74619 -23.18719 -22.56379 -22.06128 -21.10572 -20.15039 -19.27686 -18.68540 -17.94944 -17.78305 -17.53693 -17.06757 -16.85786 -16.32926 -15.98224 -15.84213 -15.66079 -15.40841 -15.01456 -14.87481 -14.53881 -14.38564 -14.20263 -13.98058 -13.78450 -13.69465 -13.49255 -13.44474 -13.28773 -13.18924 -13.05390 -12.91534 -12.75850 -12.73226 -12.59866 -12.31387 -12.04098 -11.94843 -11.80769 -11.69995 -11.63311 -11.58714 -11.46603 -11.23389 -11.01805 -10.85288 -9.58115 -9.54989 -9.47362 -9.25776 -8.92394 -8.62168 -6.22597 0.17798 0.85992 0.92974 1.03042 1.29633 1.39165 1.48633 1.55367 1.90016 2.22293 2.36084 2.70866 3.15972 3.44458 3.69089 3.70013 3.84770 3.97785 3.99942 4.03044 4.05124 4.27381 4.28703 4.30006 4.36346 4.40357 4.46318 4.49985 4.64623 4.70837 4.71771 4.75344 4.80273 4.87070 4.96682 4.98650 5.01289 5.07379 5.14462 5.21551 5.23723 5.35323 5.38169 5.39404 5.45975 5.50920 5.61192 5.65328 5.94958 5.95891 6.05077 6.22677 6.39068 6.55010 6.76125 6.80736 6.94199 7.09316 8.35325 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.001691 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.944580 B =16553.456320 C =17252.108231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.150 4.150 4 C 0.163 3.837 5 H 0.068 0.932 6 N -0.684 5.684 7 C 0.046 3.954 8 C 0.129 3.871 9 H 0.099 0.901 10 O -0.563 6.563 11 C 0.032 3.968 12 O -0.328 6.328 13 C -0.001 4.001 14 C -0.174 4.174 15 C -0.155 4.155 16 C 0.055 3.945 17 C -0.500 4.500 18 H 0.076 0.924 19 C 0.035 3.965 20 N -0.829 5.829 21 Si 0.980 3.020 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.205 4.205 26 C -0.122 4.122 27 C -0.161 4.161 28 C -0.153 4.153 29 C -0.142 4.142 30 C -0.239 4.239 31 S 0.111 5.889 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.358 0.642 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.384 0.616 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.118 0.882 46 H 0.105 0.895 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.146 0.854 51 H 0.151 0.849 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.670 3.111 -16.020 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.207 4.207 4 C 0.052 3.948 5 H 0.085 0.915 6 N -0.318 5.318 7 C -0.084 4.084 8 C 0.069 3.931 9 H 0.116 0.884 10 O -0.369 6.369 11 C -0.044 4.044 12 O -0.244 6.244 13 C -0.045 4.045 14 C -0.193 4.193 15 C -0.175 4.175 16 C 0.053 3.947 17 C -0.530 4.530 18 H 0.094 0.906 19 C -0.179 4.179 20 N -0.456 5.456 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.191 1.191 24 H -0.184 1.184 25 C -0.225 4.225 26 C -0.141 4.141 27 C -0.279 4.279 28 C -0.184 4.184 29 C -0.173 4.173 30 C -0.374 4.374 31 S 0.375 5.625 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.180 0.820 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.233 0.767 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.123 0.877 47 H 0.098 0.902 48 H 0.127 0.873 49 H 0.135 0.865 50 H 0.164 0.836 51 H 0.169 0.831 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.375 1.927 -17.700 27.058 hybrid contribution -1.188 1.049 2.897 3.302 sum -21.563 2.976 -14.803 26.324 Atomic orbital electron populations 1.21794 0.93848 1.01909 1.02375 1.21225 0.96872 0.96213 0.96555 1.21896 1.01218 0.94822 1.02767 1.20036 0.86767 0.89144 0.98837 0.91453 1.60242 1.03994 1.50550 1.17063 1.22371 0.93166 1.01961 0.90904 1.21739 0.90315 0.89589 0.91416 0.88359 1.86611 1.78057 1.19290 1.52970 1.23444 0.81162 1.00493 0.99347 1.85863 1.23413 1.85841 1.29253 1.18705 0.92637 1.08691 0.84478 1.20785 0.99430 1.06721 0.92383 1.20857 0.94586 1.05402 0.96631 1.17955 0.92264 0.91297 0.93222 1.19696 1.12094 1.28916 0.92293 0.90629 1.26720 0.93576 0.93132 1.04485 1.69894 1.27778 1.17278 1.30665 0.85229 0.78878 0.79679 0.76140 1.18794 1.19052 1.18361 1.20797 0.98840 1.10574 0.92240 1.19905 0.91913 1.04147 0.98135 1.24666 1.01154 0.99052 1.03039 1.20271 0.98729 0.96970 1.02424 1.20355 1.02292 0.93709 1.00920 1.25996 1.01599 1.04714 1.05107 1.84588 1.32846 1.00991 1.44043 0.92129 0.91777 0.93058 0.91107 0.92319 0.91279 0.92200 0.81986 0.90366 0.92778 0.76708 0.92086 0.91961 0.86446 0.87741 0.90212 0.87260 0.86470 0.83591 0.83122 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.75 71.98 0.63 -0.94 16 2 C -0.09 -1.09 2.62 -10.79 -0.03 -1.12 16 3 C -0.15 -1.48 8.91 71.98 0.64 -0.84 16 4 C 0.16 2.37 2.07 44.17 0.09 2.46 16 5 H 0.07 0.92 7.84 -2.38 -0.02 0.91 16 6 N -0.68 -11.34 6.05 -495.43 -3.00 -14.33 16 7 C 0.05 0.82 5.12 86.30 0.44 1.26 16 8 C 0.13 3.08 3.49 30.59 0.11 3.18 16 9 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 10 O -0.56 -13.49 12.91 -144.35 -1.86 -15.35 16 11 C 0.03 0.96 4.36 71.98 0.31 1.27 16 12 O -0.33 -13.19 10.09 -85.26 -0.86 -14.05 16 13 C 0.00 -0.06 6.71 22.79 0.15 0.10 16 14 C -0.17 -8.18 8.96 22.11 0.20 -7.98 16 15 C -0.16 -8.25 8.64 22.48 0.19 -8.05 16 16 C 0.05 3.02 5.56 -21.28 -0.12 2.90 16 17 C -0.50 -27.32 9.03 23.40 0.21 -27.11 16 18 H 0.08 3.98 7.92 -2.91 -0.02 3.96 16 19 C 0.04 1.78 5.09 85.24 0.43 2.21 16 20 N -0.83 -43.55 11.08 21.82 0.24 -43.31 16 21 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 C -0.20 -10.38 9.74 22.49 0.22 -10.16 16 26 C -0.12 -5.78 9.92 22.11 0.22 -5.56 16 27 C -0.16 -2.73 3.97 24.58 0.10 -2.63 16 28 C -0.15 -2.44 9.23 21.21 0.20 -2.24 16 29 C -0.14 -2.25 10.18 21.21 0.22 -2.03 16 30 C -0.24 -3.99 11.23 66.72 0.75 -3.24 16 31 S 0.11 2.11 23.08 -56.49 -1.30 0.80 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.68 6.60 -2.39 -0.02 0.67 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 0.60 6.63 -2.39 -0.02 0.58 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.36 5.55 6.25 -89.69 -0.56 4.99 16 40 H 0.08 1.53 7.90 -2.39 -0.02 1.52 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.38 6.52 9.05 -74.06 -0.67 5.85 16 43 H 0.06 1.72 7.63 -2.38 -0.02 1.71 16 44 H 0.06 1.82 7.66 -2.38 -0.02 1.80 16 45 H 0.12 4.76 6.27 -2.91 -0.02 4.75 16 46 H 0.10 5.73 6.25 -2.91 -0.02 5.72 16 47 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 48 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 49 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 50 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 51 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 52 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -64.05 433.31 -0.08 -64.13 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -0.30 Total: 40.20 kcal Atomic # 6 Polarization: -63.49 SS G_CDS: 4.97 Total: -58.52 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -2.76 Total: -57.65 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -2.72 Total: -29.40 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.30 Total: 0.80 kcal Total: -64.05 -0.08 -64.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023677389.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.785 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds