Wall clock time and date at job start Tue Mar 31 2020 05:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47271 * 2 1 4 4 C 1.52999 * 109.47375 * 120.00412 * 2 1 3 5 5 H 1.08998 * 109.47072 * 60.00063 * 4 2 1 6 6 N 1.46900 * 109.47184 * 179.97438 * 4 2 1 7 7 C 1.46898 * 111.00066 * 275.00224 * 6 4 2 8 8 C 1.53005 * 109.47064 * 180.02562 * 7 6 4 9 9 H 1.08996 * 109.47206 * 59.99602 * 8 7 6 10 10 O 1.42908 * 109.46994 * 300.00013 * 8 7 6 11 11 C 1.52992 * 109.47289 * 179.97438 * 8 7 6 12 12 O 1.42902 * 109.47372 * 184.99860 * 11 8 7 13 13 C 1.35679 * 117.00160 * 179.97438 * 12 11 8 14 14 C 1.39313 * 119.81577 * 359.72326 * 13 12 11 15 15 C 1.36434 * 120.18268 * 179.75997 * 14 13 12 16 16 C 1.40836 * 119.81087 * 0.51425 * 15 14 13 17 17 C 1.41215 * 120.18241 * 179.71865 * 16 15 14 18 18 H 1.08004 * 119.99430 * 24.56772 * 17 16 15 19 19 C 1.39888 * 120.00529 * 204.56801 * 17 16 15 20 20 N 1.30884 * 119.99428 * 17.93736 * 19 17 16 21 21 Si 1.86797 * 120.00336 * 197.94362 * 19 17 16 22 22 H 1.48502 * 109.47051 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47109 * 119.99702 * 21 19 17 24 24 H 1.48497 * 109.47333 * 240.00056 * 21 19 17 25 25 C 1.40839 * 119.64115 * 359.74061 * 16 15 14 26 26 C 1.36431 * 119.80892 * 0.02562 * 25 16 15 27 27 C 1.50699 * 109.47282 * 299.99754 * 4 2 1 28 28 C 1.33383 * 125.20027 * 99.99733 * 27 4 2 29 29 C 1.38428 * 114.91956 * 180.25417 * 28 27 4 30 30 C 1.33397 * 114.91751 * 359.48721 * 29 28 27 31 31 S 1.75878 * 125.20139 * 279.97644 * 27 4 2 32 32 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46676 * 299.99706 * 1 2 3 34 34 H 1.08996 * 109.47362 * 59.99373 * 1 2 3 35 35 H 1.09006 * 109.46676 * 240.00294 * 2 1 3 36 36 H 1.09004 * 109.46983 * 180.02562 * 3 2 1 37 37 H 1.08996 * 109.47439 * 300.00579 * 3 2 1 38 38 H 1.09000 * 109.46628 * 60.00316 * 3 2 1 39 39 H 1.00901 * 110.99791 * 151.04871 * 6 4 2 40 40 H 1.08994 * 109.47069 * 299.99532 * 7 6 4 41 41 H 1.08996 * 109.47434 * 59.99942 * 7 6 4 42 42 H 0.96700 * 113.99627 * 300.00256 * 10 8 7 43 43 H 1.08999 * 109.47371 * 305.00055 * 11 8 7 44 44 H 1.08997 * 109.47296 * 64.99886 * 11 8 7 45 45 H 1.08001 * 119.90804 * 0.02724 * 14 13 12 46 46 H 1.07997 * 120.09754 * 180.25736 * 15 14 13 47 47 H 0.97004 * 119.99426 * 179.97438 * 20 19 17 48 48 H 1.08002 * 120.08933 * 179.97438 * 25 16 15 49 49 H 1.08004 * 119.90548 * 179.97438 * 26 25 16 50 50 H 1.08000 * 122.54623 * 359.97438 * 28 27 4 51 51 H 1.07998 * 122.54151 * 179.72972 * 29 28 27 52 52 H 1.07998 * 125.19922 * 180.20724 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2491 6 7 3.5090 -0.7218 1.2488 7 6 4.0349 -1.8454 0.4621 8 6 5.5644 -1.8129 0.4857 9 1 5.9137 -1.8949 1.5149 10 8 6.0234 -0.5817 -0.0763 11 6 6.1121 -2.9834 -0.3331 12 8 7.5358 -3.0219 -0.2159 13 6 8.1827 -4.0083 -0.8863 14 6 7.4546 -4.9267 -1.6393 15 6 8.0977 -5.9187 -2.3203 16 6 9.5008 -6.0191 -2.2516 17 6 10.1741 -7.0464 -2.9485 18 1 9.7187 -7.4972 -3.8179 19 6 11.4307 -7.4800 -2.5129 20 7 11.8311 -7.2086 -1.2968 21 14 12.5371 -8.4463 -3.6668 22 1 11.8566 -8.6198 -4.9753 23 1 13.8106 -7.7086 -3.8647 24 1 12.8234 -9.7790 -3.0777 25 6 10.2289 -5.0897 -1.4837 26 6 9.5707 -4.1009 -0.8126 27 6 1.5378 -0.0110 2.4797 28 6 0.4943 -0.3945 3.2168 29 6 0.2155 0.4197 4.3010 30 6 1.0391 1.4583 4.4505 31 16 2.2382 1.4500 3.1638 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 1.8932 -0.5138 -0.8901 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 3.8708 -0.7391 2.1906 40 1 3.6853 -2.7844 0.8911 41 1 3.6852 -1.7636 -0.5670 42 1 5.7490 -0.4414 -0.9929 43 1 5.6915 -3.9168 0.0410 44 1 5.8371 -2.8548 -1.3799 45 1 6.3783 -4.8507 -1.6877 46 1 7.5323 -6.6275 -2.9070 47 1 12.7024 -7.5096 -0.9946 48 1 11.3050 -5.1602 -1.4256 49 1 10.1275 -3.3876 -0.2229 50 1 -0.0916 -1.2710 2.9828 51 1 -0.6043 0.2263 4.9770 52 1 0.9762 2.1943 5.2384 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023677392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:37 Heat of formation + Delta-G solvation = -58.929940 kcal Electronic energy + Delta-G solvation = -30748.070544 eV Core-core repulsion = 26610.220158 eV Total energy + Delta-G solvation = -4137.850387 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.166 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.67475 -39.93562 -38.81025 -37.82624 -37.13614 -35.17947 -34.53303 -32.03537 -31.37231 -30.91259 -30.14643 -27.95983 -27.31798 -26.47247 -24.99792 -24.15610 -23.26036 -22.46958 -22.17998 -20.82252 -20.00687 -19.25683 -18.71325 -18.10499 -17.54067 -17.32997 -17.03347 -16.62850 -16.23131 -16.13460 -15.82816 -15.70382 -15.41195 -15.20191 -14.93490 -14.62877 -14.46302 -14.06994 -13.91288 -13.69658 -13.60313 -13.52044 -13.41683 -13.24707 -13.10436 -13.00785 -12.82768 -12.79620 -12.64015 -12.59274 -12.37708 -12.01772 -11.84443 -11.76642 -11.69133 -11.57679 -11.51331 -11.43676 -11.20620 -10.90415 -10.86786 -9.56318 -9.53992 -9.42015 -9.21801 -8.92435 -8.59747 -6.22751 0.11773 0.78172 0.94569 1.02554 1.21454 1.40006 1.51041 1.55248 1.86851 2.22865 2.38964 2.72494 3.16902 3.56028 3.62421 3.70250 3.91302 3.99912 4.03204 4.11719 4.19614 4.28731 4.28977 4.34944 4.36039 4.44583 4.47524 4.53265 4.65205 4.68629 4.75116 4.84301 4.86798 4.88768 5.03423 5.07612 5.09979 5.15792 5.21515 5.21993 5.28188 5.28534 5.40555 5.49199 5.57295 5.58357 5.59892 5.64501 5.88415 5.96430 6.05948 6.26291 6.29099 6.56827 6.80831 6.91193 6.95114 7.10589 8.37008 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.001405 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.250643 B =19917.972822 C =20228.061123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.144 4.144 4 C 0.165 3.835 5 H 0.066 0.934 6 N -0.674 5.674 7 C 0.042 3.958 8 C 0.126 3.874 9 H 0.092 0.908 10 O -0.557 6.557 11 C 0.030 3.970 12 O -0.331 6.331 13 C 0.001 3.999 14 C -0.165 4.165 15 C -0.207 4.207 16 C 0.053 3.947 17 C -0.499 4.499 18 H 0.076 0.924 19 C 0.033 3.967 20 N -0.832 5.832 21 Si 0.982 3.018 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.152 4.152 26 C -0.135 4.135 27 C -0.183 4.183 28 C -0.141 4.141 29 C -0.143 4.143 30 C -0.234 4.234 31 S 0.119 5.881 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.343 0.657 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.383 0.617 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.130 0.870 46 H 0.106 0.894 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.105 0.895 50 H 0.148 0.852 51 H 0.153 0.847 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.401 14.960 7.676 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 C -0.202 4.202 4 C 0.054 3.946 5 H 0.084 0.916 6 N -0.306 5.306 7 C -0.087 4.087 8 C 0.066 3.934 9 H 0.110 0.890 10 O -0.363 6.363 11 C -0.046 4.046 12 O -0.247 6.247 13 C -0.043 4.043 14 C -0.183 4.183 15 C -0.226 4.226 16 C 0.051 3.949 17 C -0.528 4.528 18 H 0.095 0.905 19 C -0.181 4.181 20 N -0.459 5.459 21 Si 0.803 3.197 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.192 1.192 25 C -0.172 4.172 26 C -0.154 4.154 27 C -0.301 4.301 28 C -0.172 4.172 29 C -0.173 4.173 30 C -0.370 4.370 31 S 0.383 5.617 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.162 0.838 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.231 0.769 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.148 0.852 46 H 0.124 0.876 47 H 0.098 0.902 48 H 0.127 0.873 49 H 0.123 0.877 50 H 0.165 0.835 51 H 0.171 0.829 52 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.608 16.528 7.676 29.038 hybrid contribution -0.994 -2.391 0.175 2.596 sum -23.602 14.137 7.852 28.610 Atomic orbital electron populations 1.21832 0.94479 1.01983 1.01942 1.21050 0.95574 0.96868 0.96252 1.21858 1.01820 0.95381 1.01127 1.20090 0.87031 0.96963 0.90536 0.91632 1.60425 1.06099 1.45128 1.18938 1.22482 0.93002 0.92772 1.00492 1.21732 0.92327 0.82106 0.97252 0.89036 1.86609 1.78530 1.38382 1.32753 1.23498 0.79857 1.00138 1.01154 1.85883 1.20723 1.49215 1.68874 1.18685 0.91544 0.93005 1.01021 1.20700 0.99076 0.97277 1.01284 1.20802 0.93901 1.01601 1.06327 1.17973 0.92014 0.92547 0.92379 1.19735 1.02799 1.17875 1.12432 0.90546 1.26746 0.99029 0.96233 0.96090 1.69902 1.20346 1.38759 1.16905 0.85161 0.77739 0.77857 0.78944 1.18095 1.19038 1.19175 1.20893 0.99398 0.95029 1.01864 1.20009 0.91894 1.00343 1.03167 1.24562 1.02332 1.01053 1.02122 1.20311 0.98521 1.02448 0.95914 1.20368 1.01959 0.95394 0.99624 1.26093 1.01340 1.04813 1.04733 1.84711 1.32554 1.24176 1.20228 0.92264 0.92922 0.92213 0.90683 0.92178 0.93074 0.92854 0.83811 0.92859 0.88967 0.76888 0.91551 0.91471 0.85226 0.87566 0.90239 0.87322 0.87658 0.83485 0.82913 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.88 71.98 0.64 -1.05 16 2 C -0.08 -1.04 2.83 -10.79 -0.03 -1.07 16 3 C -0.14 -2.22 8.47 71.98 0.61 -1.61 16 4 C 0.16 2.27 2.28 44.17 0.10 2.37 16 5 H 0.07 0.85 7.78 -2.39 -0.02 0.83 16 6 N -0.67 -10.62 5.21 -495.46 -2.58 -13.20 16 7 C 0.04 0.65 5.15 86.31 0.44 1.10 16 8 C 0.13 2.79 3.45 30.59 0.11 2.90 16 9 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 10 O -0.56 -13.93 13.17 -144.37 -1.90 -15.83 16 11 C 0.03 0.82 4.37 71.98 0.31 1.13 16 12 O -0.33 -13.05 10.09 -85.35 -0.86 -13.91 16 13 C 0.00 0.06 6.71 22.79 0.15 0.21 16 14 C -0.16 -7.15 8.96 22.11 0.20 -6.95 16 15 C -0.21 -10.08 9.74 22.48 0.22 -9.86 16 16 C 0.05 2.90 5.57 -21.28 -0.12 2.79 16 17 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 18 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 19 C 0.03 1.67 5.13 85.23 0.44 2.11 16 20 N -0.83 -44.32 10.96 21.82 0.24 -44.08 16 21 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 25 C -0.15 -8.28 8.64 22.48 0.19 -8.08 16 26 C -0.14 -6.74 9.92 22.11 0.22 -6.52 16 27 C -0.18 -2.64 3.65 24.59 0.09 -2.55 16 28 C -0.14 -1.85 9.26 21.22 0.20 -1.65 16 29 C -0.14 -1.78 10.18 21.22 0.22 -1.56 16 30 C -0.23 -3.06 11.23 66.72 0.75 -2.31 16 31 S 0.12 1.83 20.46 -56.49 -1.16 0.67 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.68 6.70 -2.38 -0.02 0.67 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.00 7.45 -2.38 -0.02 0.98 16 36 H 0.06 1.10 7.61 -2.38 -0.02 1.08 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.86 5.43 -2.42 -0.01 0.85 16 39 H 0.34 5.88 8.15 -89.69 -0.73 5.15 16 40 H 0.05 0.75 8.05 -2.39 -0.02 0.73 16 41 H 0.09 1.25 7.43 -2.39 -0.02 1.23 16 42 H 0.38 7.20 9.05 -74.06 -0.67 6.53 16 43 H 0.07 1.71 7.63 -2.39 -0.02 1.69 16 44 H 0.07 1.67 7.66 -2.39 -0.02 1.66 16 45 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 46 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 47 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 48 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 49 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 50 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 51 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 52 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -64.16 428.70 0.26 -63.91 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.46 Total: 39.37 kcal Atomic # 6 Polarization: -62.49 SS G_CDS: 4.95 Total: -57.54 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -2.34 Total: -57.28 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -2.76 Total: -29.74 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.16 Total: 0.67 kcal Total: -64.16 0.26 -63.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023677392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.976 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds