Wall clock time and date at job start Tue Mar 31 2020 05:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35865 * 125.64455 * 2 1 4 4 C 1.35919 * 108.76569 * 180.13972 * 3 2 1 5 5 N 1.40662 * 126.12698 * 179.83669 * 4 3 2 6 6 C 1.34773 * 120.00190 * 179.71651 * 5 4 3 7 7 O 1.21719 * 120.00166 * 5.29490 * 6 5 4 8 8 C 1.46665 * 120.00310 * 185.29381 * 6 5 4 9 9 C 1.37878 * 126.23141 * 5.00400 * 8 6 5 10 10 C 1.39843 * 107.08764 * 179.97438 * 9 8 6 11 11 N 1.48024 * 126.06752 * 179.97438 * 10 9 8 12 12 O 1.21794 * 120.00022 * 359.97438 * 11 10 9 13 13 O 1.21808 * 119.99972 * 179.97438 * 11 10 9 14 14 C 1.35446 * 107.86337 * 359.73599 * 10 9 8 15 15 N 1.35554 * 108.87119 * 0.43133 * 14 10 9 16 16 C 1.46495 * 125.67934 * 179.83132 * 15 14 10 17 17 C 1.40223 * 107.74844 * 359.57053 * 4 3 2 18 18 C 1.37604 * 125.64877 * 179.65852 * 2 1 3 19 19 C 1.46663 * 126.16283 * 0.05066 * 18 2 1 20 20 O 1.21694 * 119.99724 * 354.80149 * 19 18 2 21 21 N 1.34776 * 119.99686 * 174.79915 * 19 18 2 22 22 C 1.46498 * 119.99626 * 185.03134 * 21 19 18 23 23 C 1.50706 * 109.47095 * 179.97438 * 22 21 19 24 24 H 1.07994 * 119.99710 * 359.97438 * 23 22 21 25 25 C 1.37885 * 119.99824 * 179.97438 * 23 22 21 26 26 N 1.31508 * 119.99907 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99509 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47498 * 60.00027 * 27 25 23 29 29 H 1.48500 * 109.46886 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.46991 * 299.99547 * 27 25 23 31 31 H 1.09009 * 109.46831 * 275.07241 * 1 2 3 32 32 H 1.09003 * 109.47524 * 35.06761 * 1 2 3 33 33 H 1.08994 * 109.47286 * 155.07495 * 1 2 3 34 34 H 1.08000 * 125.61703 * 359.97438 * 3 2 1 35 35 H 0.97007 * 119.99995 * 359.70738 * 5 4 3 36 36 H 1.08000 * 126.45771 * 359.97438 * 9 8 6 37 37 H 1.08008 * 125.56310 * 180.25771 * 14 10 9 38 38 H 1.08997 * 109.47192 * 264.48903 * 16 15 14 39 39 H 1.08998 * 109.47312 * 144.49026 * 16 15 14 40 40 H 1.08998 * 109.47220 * 24.48978 * 16 15 14 41 41 H 1.07994 * 126.44655 * 180.28042 * 17 4 3 42 42 H 0.96998 * 120.00391 * 5.02963 * 21 19 18 43 43 H 1.09002 * 109.47171 * 299.99779 * 22 21 19 44 44 H 1.09006 * 109.47264 * 60.00165 * 22 21 19 45 45 H 0.97004 * 119.99551 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2567 1.1041 0.0000 4 6 3.5574 0.7095 -0.0031 5 7 4.6808 1.5559 -0.0074 6 6 5.9214 1.0292 -0.0044 7 8 6.0714 -0.1753 -0.0953 8 6 7.0907 1.9073 0.1083 9 6 7.0692 3.2705 0.3140 10 6 8.3992 3.7005 0.3572 11 7 8.8588 5.0931 0.5589 12 8 8.0453 5.9876 0.7059 13 8 10.0505 5.3444 0.5780 14 6 9.1923 2.6158 0.1870 15 7 8.4093 1.5207 0.0288 16 6 8.8870 0.1524 -0.1850 17 6 3.5787 -0.6926 0.0048 18 6 2.2669 -1.1182 0.0067 19 6 1.8091 -2.5115 0.0139 20 8 0.6220 -2.7614 0.1099 21 7 2.7032 -3.5150 -0.0858 22 6 2.2401 -4.9010 -0.1896 23 6 3.4289 -5.8218 -0.2891 24 1 4.4293 -5.4152 -0.2766 25 6 3.2393 -7.1834 -0.3959 26 7 2.0210 -7.6784 -0.4105 27 14 4.7130 -8.3247 -0.5185 28 1 5.5579 -8.1742 0.6933 29 1 4.2435 -9.7296 -0.6239 30 1 5.5089 -7.9778 -1.7232 31 1 -0.3633 0.0909 1.0237 32 1 -0.3634 0.8411 -0.5904 33 1 -0.3633 -0.9319 -0.4331 34 1 1.9098 2.1269 -0.0004 35 1 4.5627 2.5187 -0.0126 36 1 6.1908 3.8896 0.4215 37 1 10.2723 2.6228 0.1761 38 1 8.9010 -0.0649 -1.2530 39 1 8.2213 -0.5479 0.3194 40 1 9.8941 0.0518 0.2195 41 1 4.4570 -1.3209 0.0091 42 1 3.6533 -3.3197 -0.0888 43 1 1.6555 -5.1559 0.6944 44 1 1.6201 -5.0113 -1.0794 45 1 1.8877 -8.6363 -0.4861 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026023640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:38 Heat of formation + Delta-G solvation = 33.024474 kcal Electronic energy + Delta-G solvation = -32781.309843 eV Core-core repulsion = 27997.613341 eV Total energy + Delta-G solvation = -4783.696502 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.87984 -41.85100 -41.44680 -39.50165 -38.26431 -36.73966 -35.42461 -34.32955 -33.89956 -32.68260 -32.03588 -30.69374 -29.23513 -28.32881 -27.02453 -26.35955 -25.77199 -23.97200 -23.26847 -21.91752 -21.60118 -20.70947 -20.18088 -19.70597 -18.97146 -18.68145 -18.00301 -17.80104 -17.23419 -16.46631 -16.41286 -16.28271 -15.83450 -15.63210 -15.16134 -15.11614 -14.91046 -14.74297 -14.30269 -14.10814 -14.03894 -13.65395 -13.43483 -13.16656 -13.08200 -12.88559 -12.55750 -12.42426 -12.30396 -11.95492 -11.84642 -11.83503 -11.53018 -11.37785 -11.02509 -10.91557 -10.84550 -10.34067 -10.32882 -10.05549 -9.45582 -9.44416 -9.29448 -8.76903 -8.42471 -8.01713 -7.72338 -6.19069 -4.25660 -0.05292 0.53796 0.97206 1.65108 1.76087 1.78605 2.35898 2.52660 2.97251 3.06538 3.24005 3.28657 3.30348 3.77258 3.87615 3.92321 4.01386 4.12244 4.24822 4.36271 4.58536 4.65988 4.79541 4.85456 4.88819 5.06365 5.17274 5.18975 5.24905 5.29495 5.32311 5.61519 5.69175 5.75634 5.93686 5.97209 6.05084 6.15394 6.66760 6.94787 7.12274 7.17392 7.26310 7.36158 7.42691 7.46597 7.64174 7.68978 7.93112 8.55617 8.72368 8.99245 9.40322 10.91114 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.002055 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.156402 B =13621.364918 C =16489.182056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.403 5.403 3 C -0.021 4.021 4 C 0.050 3.950 5 N -0.626 5.626 6 C 0.587 3.413 7 O -0.513 6.513 8 C -0.021 4.021 9 C -0.087 4.087 10 C -0.130 4.130 11 N 0.064 4.936 12 O -0.163 6.163 13 O -0.175 6.175 14 C 0.112 3.888 15 N -0.386 5.386 16 C 0.057 3.943 17 C -0.145 4.145 18 C -0.018 4.018 19 C 0.570 3.430 20 O -0.563 6.563 21 N -0.694 5.694 22 C 0.251 3.749 23 C -0.543 4.543 24 H 0.064 0.936 25 C 0.064 3.936 26 N -0.886 5.886 27 Si 0.905 3.095 28 H -0.275 1.275 29 H -0.285 1.285 30 H -0.275 1.275 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.170 0.830 35 H 0.411 0.589 36 H 0.172 0.828 37 H 0.201 0.799 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.168 0.832 42 H 0.395 0.605 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.751 23.885 0.407 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.076 5.076 3 C -0.157 4.157 4 C -0.049 4.049 5 N -0.269 5.269 6 C 0.374 3.626 7 O -0.389 6.389 8 C -0.134 4.134 9 C -0.112 4.112 10 C -0.221 4.221 11 N 0.581 4.419 12 O -0.378 6.378 13 O -0.387 6.387 14 C -0.032 4.032 15 N -0.057 5.057 16 C -0.082 4.082 17 C -0.172 4.172 18 C -0.134 4.134 19 C 0.355 3.645 20 O -0.445 6.445 21 N -0.341 5.341 22 C 0.131 3.869 23 C -0.581 4.581 24 H 0.082 0.918 25 C -0.140 4.140 26 N -0.523 5.523 27 Si 0.732 3.268 28 H -0.200 1.200 29 H -0.211 1.211 30 H -0.200 1.200 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.187 0.813 35 H 0.246 0.754 36 H 0.189 0.811 37 H 0.218 0.782 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.185 0.815 42 H 0.229 0.771 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.393 21.526 0.227 23.487 hybrid contribution 1.333 0.520 -0.006 1.431 sum 10.726 22.046 0.221 24.518 Atomic orbital electron populations 1.22315 0.75504 1.05785 1.03674 1.43598 1.06841 1.04430 1.52771 1.21149 0.88501 0.91969 1.14122 1.16654 0.85069 0.90521 1.12628 1.42255 1.03074 1.09547 1.72059 1.16552 0.81494 0.86727 0.77844 1.90820 1.85302 1.14064 1.48704 1.20094 0.85175 0.92793 1.15375 1.21186 0.96018 0.92456 1.01584 1.20091 0.95095 0.82672 1.24252 1.42593 1.00470 1.01779 0.97013 1.94553 1.50947 1.38907 1.53373 1.94550 0.99831 1.88870 1.55418 1.21803 0.98329 0.83652 0.99442 1.44111 1.04647 1.08779 1.48145 1.22682 1.02485 0.77889 1.05148 1.21641 0.95686 0.92953 1.06941 1.20583 0.89636 0.88629 1.14546 1.16984 0.86244 0.83128 0.78120 1.90728 1.16366 1.84851 1.52549 1.46233 1.09063 1.08250 1.70539 1.19175 0.95891 0.74030 0.97787 1.21178 0.92500 0.91576 1.52893 0.91803 1.24942 0.96274 0.98057 0.94704 1.69960 1.20327 1.13388 1.48630 0.86457 0.82172 0.79449 0.78740 1.20034 1.21080 1.20045 0.90577 0.90269 0.87133 0.81285 0.75386 0.81057 0.78238 0.88811 0.86420 0.88464 0.81458 0.77097 0.95158 0.95324 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.66 59.84 0.64 1.39 16 2 N -0.40 -5.38 3.17 -120.02 -0.38 -5.76 16 3 C -0.02 -0.22 11.42 -16.60 -0.19 -0.41 16 4 C 0.05 0.60 6.90 -83.89 -0.58 0.02 16 5 N -0.63 -5.48 5.44 -11.21 -0.06 -5.54 16 6 C 0.59 5.88 7.74 -12.86 -0.10 5.78 16 7 O -0.51 -6.62 11.96 5.17 0.06 -6.56 16 8 C -0.02 -0.17 6.88 -81.99 -0.56 -0.73 16 9 C -0.09 -0.62 10.07 -39.11 -0.39 -1.01 16 10 C -0.13 -1.06 7.11 -80.34 -0.57 -1.63 16 11 N 0.06 0.67 4.45 33.77 0.15 0.82 16 12 O -0.16 -1.86 19.05 -29.46 -0.56 -2.42 16 13 O -0.17 -1.93 19.03 -29.46 -0.56 -2.49 16 14 C 0.11 0.67 11.05 -16.90 -0.19 0.48 16 15 N -0.39 -2.52 3.16 -120.24 -0.38 -2.90 16 16 C 0.06 0.27 10.50 59.84 0.63 0.90 16 17 C -0.15 -2.19 9.14 -38.96 -0.36 -2.55 16 18 C -0.02 -0.31 6.88 -82.00 -0.56 -0.87 16 19 C 0.57 11.76 7.77 -12.86 -0.10 11.66 16 20 O -0.56 -13.04 14.62 5.19 0.08 -12.97 16 21 N -0.69 -15.03 5.53 -62.80 -0.35 -15.38 16 22 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 23 C -0.54 -14.67 9.28 -34.43 -0.32 -14.99 16 24 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 25 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 26 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 27 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 30 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 31 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.11 1.54 6.16 -51.93 -0.32 1.22 16 34 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.41 2.08 7.77 -40.82 -0.32 1.76 16 36 H 0.17 0.80 7.49 -52.49 -0.39 0.40 16 37 H 0.20 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.12 0.80 6.52 -51.93 -0.34 0.46 16 40 H 0.10 0.18 8.12 -51.93 -0.42 -0.24 16 41 H 0.17 2.65 5.37 -52.49 -0.28 2.37 16 42 H 0.40 7.70 7.21 -40.82 -0.29 7.41 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -36.24 398.23 -7.93 -44.17 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.86 Total: 6.07 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.78 Total: 6.31 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.28 Total: -53.80 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.98 Total: -24.43 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.24 -7.93 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026023640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.192 kcal (2) G-P(sol) polarization free energy of solvation -36.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds