Wall clock time and date at job start Tue Mar 31 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.47084 * 2 1 4 4 C 1.35603 * 124.72609 * 265.30583 * 3 2 1 5 5 C 1.37839 * 109.47273 * 180.12078 * 4 3 2 6 6 C 1.46139 * 126.86368 * 179.89157 * 5 4 3 7 7 C 1.36282 * 119.99987 * 359.68308 * 6 5 4 8 8 O 1.35402 * 125.74415 * 0.02718 * 7 6 5 9 9 C 1.35041 * 111.42977 * 179.97438 * 8 7 6 10 10 C 1.38796 * 132.13499 * 180.32449 * 9 8 7 11 11 C 1.38687 * 119.89756 * 180.18001 * 10 9 8 12 12 O 1.35603 * 119.73803 * 179.76724 * 11 10 9 13 13 C 1.34793 * 116.99667 * 5.26940 * 12 11 10 14 14 H 1.07999 * 120.00118 * 354.91608 * 13 12 11 15 15 C 1.38714 * 120.00087 * 174.64899 * 13 12 11 16 16 N 1.31510 * 119.99966 * 0.27148 * 15 13 12 17 17 Si 1.86800 * 120.00142 * 180.27547 * 15 13 12 18 18 H 1.48500 * 109.47153 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47424 * 119.99809 * 17 15 13 20 20 H 1.48503 * 109.47135 * 239.99605 * 17 15 13 21 21 C 1.39383 * 120.52875 * 359.48160 * 11 10 9 22 22 C 1.36580 * 120.21242 * 0.24296 * 21 11 10 23 23 C 1.39532 * 119.87883 * 0.02562 * 22 21 11 24 24 C 1.42004 * 125.74352 * 180.02562 * 7 6 5 25 25 O 1.22006 * 127.40349 * 359.97438 * 24 7 6 26 26 C 1.47566 * 106.26805 * 359.63039 * 5 4 3 27 27 C 1.39245 * 133.87723 * 180.22638 * 26 5 4 28 28 C 1.37777 * 119.68974 * 179.97438 * 27 26 5 29 29 C 1.38732 * 120.27873 * 0.04170 * 28 27 26 30 30 C 1.37772 * 120.63130 * 359.97438 * 29 28 27 31 31 C 1.38007 * 124.73077 * 85.00243 * 3 2 1 32 32 H 1.08992 * 109.47117 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46827 * 300.00253 * 1 2 3 34 34 H 1.08994 * 109.46725 * 59.99575 * 1 2 3 35 35 H 1.09001 * 109.46827 * 239.99747 * 2 1 3 36 36 H 1.09003 * 109.47299 * 119.99864 * 2 1 3 37 37 H 1.07999 * 125.26067 * 359.97438 * 4 3 2 38 38 H 1.08005 * 120.00252 * 179.68873 * 6 5 4 39 39 H 1.07995 * 120.04844 * 359.91736 * 10 9 8 40 40 H 0.97000 * 120.00100 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.89593 * 180.25555 * 21 11 10 42 42 H 1.08003 * 120.06083 * 180.02562 * 22 21 11 43 43 H 1.08000 * 120.15081 * 359.97438 * 27 26 5 44 44 H 1.07998 * 119.86176 * 180.02562 * 28 27 26 45 45 H 1.08003 * 119.68772 * 180.02562 * 29 28 27 46 46 H 1.08004 * 120.02492 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3619 2.0791 -1.1108 5 6 2.7797 3.3419 -0.7491 6 6 3.2364 4.4038 -1.6432 7 6 3.2848 4.1885 -2.9881 8 8 2.9384 3.0412 -3.6184 9 6 3.0981 3.1452 -4.9552 10 6 2.8721 2.2509 -5.9924 11 6 3.1319 2.6299 -7.3009 12 8 2.9144 1.7520 -8.3112 13 6 2.3452 0.5741 -7.9864 14 1 2.1595 0.3315 -6.9506 15 6 1.9928 -0.3242 -8.9830 16 7 2.2190 -0.0288 -10.2444 17 14 1.1969 -1.9532 -8.5334 18 1 1.0528 -2.0433 -7.0582 19 1 -0.1425 -2.0417 -9.1683 20 1 2.0483 -3.0700 -9.0162 21 6 3.6092 3.9080 -7.5864 22 6 3.8309 4.8003 -6.5765 23 6 3.5791 4.4308 -5.2547 24 6 3.7070 5.1294 -3.9642 25 8 4.0919 6.2716 -3.7748 26 6 2.6677 3.4092 0.7207 27 6 2.9300 4.3991 1.6643 28 6 2.7152 4.1420 3.0007 29 6 2.2408 2.9034 3.4074 30 6 1.9776 1.9150 2.4844 31 6 2.1873 2.1555 1.1299 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3632 0.5139 -0.8899 35 1 1.8934 -0.5139 -0.8900 36 1 1.8935 -0.5138 0.8900 37 1 2.3173 1.7028 -2.1221 38 1 3.5356 5.3593 -1.2383 39 1 2.4985 1.2601 -5.7803 40 1 1.9723 -0.6568 -10.9413 41 1 3.8042 4.1936 -8.6095 42 1 4.2004 5.7901 -6.8005 43 1 3.3000 5.3638 1.3500 44 1 2.9173 4.9079 3.7349 45 1 2.0755 2.7123 4.4574 46 1 1.6089 0.9541 2.8119 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028182768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:36 Heat of formation + Delta-G solvation = 27.455938 kcal Electronic energy + Delta-G solvation = -32269.049505 eV Core-core repulsion = 27863.668045 eV Total energy + Delta-G solvation = -4405.381460 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.90961 -41.43906 -38.92943 -37.68502 -37.38513 -36.07977 -34.66968 -32.63706 -32.24821 -31.00160 -29.92907 -29.71056 -29.35761 -27.99827 -26.08230 -24.88485 -23.69618 -22.91250 -22.36702 -21.68215 -21.02835 -20.23976 -19.54857 -18.20227 -17.68976 -17.22877 -16.77315 -16.37262 -15.93978 -15.75914 -15.56002 -15.27405 -14.94447 -14.69417 -14.46351 -14.36200 -14.14595 -13.89787 -13.81088 -13.67514 -13.29415 -13.24263 -13.14959 -12.89311 -12.79548 -12.67144 -12.31001 -12.09570 -11.92881 -11.82953 -11.65139 -11.56668 -11.42221 -11.08831 -11.00414 -10.93558 -10.63237 -10.32675 -9.82164 -9.28514 -9.17276 -9.09678 -8.41933 -8.16760 -7.57820 -7.22212 -6.79394 -4.34651 0.32631 1.01254 1.42134 1.83747 2.10325 2.48095 2.74451 2.95192 2.96512 3.02481 3.11752 3.46483 3.70999 3.77617 4.24809 4.29443 4.32585 4.39431 4.63433 4.71530 4.78044 4.79328 4.86104 4.87439 4.92803 5.01915 5.21110 5.22523 5.26979 5.33143 5.42314 5.43740 5.48351 5.60969 5.68609 5.70868 5.77368 5.83357 6.04887 6.11835 6.17418 6.32105 6.38630 6.47008 6.52902 6.57967 6.69587 6.85281 6.96859 6.98747 7.04183 7.09716 7.20854 7.61550 7.66774 7.90089 8.64486 9.27707 10.36270 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.009212 B = 0.002539 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.922305 B =11024.025280 C =13964.921489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.470 5.470 4 C 0.108 3.892 5 C -0.174 4.174 6 C 0.015 3.985 7 C -0.054 4.054 8 O -0.227 6.227 9 C 0.179 3.821 10 C -0.257 4.257 11 C 0.202 3.798 12 O -0.147 6.147 13 C -0.394 4.394 14 H 0.101 0.899 15 C 0.044 3.956 16 N -0.843 5.843 17 Si 0.947 3.053 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.215 4.215 22 C 0.026 3.974 23 C -0.361 4.361 24 C 0.415 3.585 25 O -0.467 6.467 26 C -0.081 4.081 27 C -0.075 4.075 28 C -0.142 4.142 29 C -0.106 4.106 30 C -0.124 4.124 31 C 0.088 3.912 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.186 0.814 38 H 0.158 0.842 39 H 0.140 0.860 40 H 0.276 0.724 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 0.071 22.397 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.151 5.151 4 C -0.022 4.022 5 C -0.180 4.180 6 C -0.005 4.005 7 C -0.099 4.099 8 O -0.136 6.136 9 C 0.134 3.866 10 C -0.277 4.277 11 C 0.144 3.856 12 O -0.046 6.046 13 C -0.469 4.469 14 H 0.119 0.881 15 C -0.164 4.164 16 N -0.475 5.475 17 Si 0.770 3.230 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.198 1.198 21 C -0.235 4.235 22 C 0.007 3.993 23 C -0.364 4.364 24 C 0.301 3.699 25 O -0.350 6.350 26 C -0.085 4.085 27 C -0.093 4.093 28 C -0.161 4.161 29 C -0.125 4.125 30 C -0.144 4.144 31 C -0.016 4.016 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.175 0.825 39 H 0.157 0.843 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.159 -0.063 22.076 22.181 hybrid contribution -0.451 -0.990 0.095 1.092 sum -2.609 -1.053 22.171 22.349 Atomic orbital electron populations 1.22198 0.94260 1.03178 1.03388 1.21884 0.95667 0.79901 1.04636 1.43915 1.54221 1.12216 1.04750 1.22991 0.96292 0.91300 0.91566 1.19071 1.13657 0.94446 0.90870 1.20928 0.94850 0.97553 0.87204 1.20616 1.07986 0.87723 0.93539 1.84198 1.77371 1.34569 1.17463 1.19208 0.92129 0.93929 0.81334 1.19813 1.17403 1.01290 0.89181 1.19067 0.90477 0.89337 0.86733 1.83963 1.65378 1.24650 1.30611 1.21606 1.39080 0.91103 0.95090 0.88132 1.25451 0.96556 0.99910 0.94446 1.70018 1.41599 1.36344 0.99517 0.85554 0.78818 0.79374 0.79219 1.18765 1.19744 1.19760 1.19924 1.11588 0.92129 0.99816 1.19843 0.92087 0.97975 0.89363 1.20482 1.22509 0.97713 0.95699 1.19098 0.75705 0.86728 0.88324 1.90667 1.40016 1.17631 1.86693 1.19006 1.03356 0.93723 0.92372 1.20496 0.98878 0.98041 0.91896 1.20900 1.02466 0.97343 0.95424 1.20766 0.99874 0.93145 0.98735 1.20025 1.05002 1.00157 0.89212 1.18253 1.03707 0.91267 0.88343 0.90525 0.91926 0.91491 0.88563 0.89374 0.79676 0.82505 0.84251 0.91340 0.85213 0.85775 0.85754 0.85913 0.85848 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.10 0.76 6.66 -4.04 -0.03 0.73 16 3 N -0.47 -5.11 2.75 -113.73 -0.31 -5.42 16 4 C 0.11 1.38 10.49 -16.03 -0.17 1.21 16 5 C -0.17 -2.35 6.27 -103.07 -0.65 -3.00 16 6 C 0.01 0.21 10.09 -37.12 -0.37 -0.17 16 7 C -0.05 -0.90 6.76 -38.84 -0.26 -1.16 16 8 O -0.23 -3.97 7.80 0.50 0.00 -3.96 16 9 C 0.18 3.50 7.32 -38.53 -0.28 3.22 16 10 C -0.26 -5.34 9.18 -39.21 -0.36 -5.70 16 11 C 0.20 4.54 6.65 -38.99 -0.26 4.28 16 12 O -0.15 -3.81 9.74 0.61 0.01 -3.80 16 13 C -0.39 -9.97 9.48 30.91 0.29 -9.68 16 14 H 0.10 2.33 5.17 -52.49 -0.27 2.06 16 15 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 16 N -0.84 -22.61 13.67 55.48 0.76 -21.85 16 17 Si 0.95 18.56 29.55 -169.99 -5.02 13.53 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 C -0.22 -4.30 9.93 -39.75 -0.39 -4.70 16 22 C 0.03 0.49 10.04 -39.70 -0.40 0.09 16 23 C -0.36 -7.10 6.37 -104.88 -0.67 -7.77 16 24 C 0.41 7.83 7.55 -34.45 -0.26 7.57 16 25 O -0.47 -9.39 18.02 4.91 0.09 -9.30 16 26 C -0.08 -1.01 6.35 -104.92 -0.67 -1.67 16 27 C -0.07 -0.79 10.09 -39.38 -0.40 -1.19 16 28 C -0.14 -1.27 10.03 -39.57 -0.40 -1.67 16 29 C -0.11 -0.90 10.01 -39.57 -0.40 -1.30 16 30 C -0.12 -1.16 9.96 -39.41 -0.39 -1.55 16 31 C 0.09 1.01 6.78 -83.94 -0.57 0.44 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.19 2.36 6.06 -52.49 -0.32 2.04 16 38 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 39 H 0.14 2.81 5.59 -52.49 -0.29 2.52 16 40 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 42 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 46 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -30.53 400.80 -9.87 -40.40 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.09 Total: 6.17 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -6.34 Total: -21.81 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.45 Total: -27.27 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.10 Total: -17.06 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.53 -9.87 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028182768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.860 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds