Wall clock time and date at job start Tue Mar 31 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.47084 * 2 1 4 4 C 1.35603 * 124.72609 * 265.30583 * 3 2 1 5 5 C 1.37839 * 109.47273 * 180.12078 * 4 3 2 6 6 C 1.46139 * 126.86368 * 179.89157 * 5 4 3 7 7 C 1.36282 * 119.99987 * 359.68308 * 6 5 4 8 8 O 1.35402 * 125.74415 * 0.02718 * 7 6 5 9 9 C 1.35041 * 111.42977 * 179.97438 * 8 7 6 10 10 C 1.38796 * 132.13499 * 180.32449 * 9 8 7 11 11 C 1.38687 * 119.89756 * 180.18001 * 10 9 8 12 12 O 1.35603 * 119.73803 * 179.76724 * 11 10 9 13 13 C 1.34793 * 116.99667 * 5.26940 * 12 11 10 14 14 H 1.07999 * 120.00118 * 354.91608 * 13 12 11 15 15 C 1.38714 * 120.00087 * 174.64899 * 13 12 11 16 16 N 1.31510 * 119.99966 * 0.27148 * 15 13 12 17 17 Si 1.86800 * 120.00142 * 180.27547 * 15 13 12 18 18 H 1.48500 * 109.47153 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47424 * 119.99809 * 17 15 13 20 20 H 1.48503 * 109.47135 * 239.99605 * 17 15 13 21 21 C 1.39383 * 120.52875 * 359.48160 * 11 10 9 22 22 C 1.36580 * 120.21242 * 0.24296 * 21 11 10 23 23 C 1.39532 * 119.87883 * 0.02562 * 22 21 11 24 24 C 1.42004 * 125.74352 * 180.02562 * 7 6 5 25 25 O 1.22006 * 127.40349 * 359.97438 * 24 7 6 26 26 C 1.47566 * 106.26805 * 359.63039 * 5 4 3 27 27 C 1.39245 * 133.87723 * 180.22638 * 26 5 4 28 28 C 1.37777 * 119.68974 * 179.97438 * 27 26 5 29 29 C 1.38732 * 120.27873 * 0.04170 * 28 27 26 30 30 C 1.37772 * 120.63130 * 359.97438 * 29 28 27 31 31 C 1.38007 * 124.73077 * 85.00243 * 3 2 1 32 32 H 1.08992 * 109.47117 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46827 * 300.00253 * 1 2 3 34 34 H 1.08994 * 109.46725 * 59.99575 * 1 2 3 35 35 H 1.09001 * 109.46827 * 239.99747 * 2 1 3 36 36 H 1.09003 * 109.47299 * 119.99864 * 2 1 3 37 37 H 1.07999 * 125.26067 * 359.97438 * 4 3 2 38 38 H 1.08005 * 120.00252 * 179.68873 * 6 5 4 39 39 H 1.07995 * 120.04844 * 359.91736 * 10 9 8 40 40 H 0.97000 * 120.00100 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.89593 * 180.25555 * 21 11 10 42 42 H 1.08003 * 120.06083 * 180.02562 * 22 21 11 43 43 H 1.08000 * 120.15081 * 359.97438 * 27 26 5 44 44 H 1.07998 * 119.86176 * 180.02562 * 28 27 26 45 45 H 1.08003 * 119.68772 * 180.02562 * 29 28 27 46 46 H 1.08004 * 120.02492 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3619 2.0791 -1.1108 5 6 2.7797 3.3419 -0.7491 6 6 3.2364 4.4038 -1.6432 7 6 3.2848 4.1885 -2.9881 8 8 2.9384 3.0412 -3.6184 9 6 3.0981 3.1452 -4.9552 10 6 2.8721 2.2509 -5.9924 11 6 3.1319 2.6299 -7.3009 12 8 2.9144 1.7520 -8.3112 13 6 2.3452 0.5741 -7.9864 14 1 2.1595 0.3315 -6.9506 15 6 1.9928 -0.3242 -8.9830 16 7 2.2190 -0.0288 -10.2444 17 14 1.1969 -1.9532 -8.5334 18 1 1.0528 -2.0433 -7.0582 19 1 -0.1425 -2.0417 -9.1683 20 1 2.0483 -3.0700 -9.0162 21 6 3.6092 3.9080 -7.5864 22 6 3.8309 4.8003 -6.5765 23 6 3.5791 4.4308 -5.2547 24 6 3.7070 5.1294 -3.9642 25 8 4.0919 6.2716 -3.7748 26 6 2.6677 3.4092 0.7207 27 6 2.9300 4.3991 1.6643 28 6 2.7152 4.1420 3.0007 29 6 2.2408 2.9034 3.4074 30 6 1.9776 1.9150 2.4844 31 6 2.1873 2.1555 1.1299 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3632 0.5139 -0.8899 35 1 1.8934 -0.5139 -0.8900 36 1 1.8935 -0.5138 0.8900 37 1 2.3173 1.7028 -2.1221 38 1 3.5356 5.3593 -1.2383 39 1 2.4985 1.2601 -5.7803 40 1 1.9723 -0.6568 -10.9413 41 1 3.8042 4.1936 -8.6095 42 1 4.2004 5.7901 -6.8005 43 1 3.3000 5.3638 1.3500 44 1 2.9173 4.9079 3.7349 45 1 2.0755 2.7123 4.4574 46 1 1.6089 0.9541 2.8119 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028182768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:34 Heat of formation + Delta-G solvation = 13.869346 kcal Electronic energy + Delta-G solvation = -32269.638663 eV Core-core repulsion = 27863.668045 eV Total energy + Delta-G solvation = -4405.970619 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.27837 -42.36191 -40.62093 -39.15839 -38.14426 -37.66692 -35.61249 -34.41236 -33.25567 -31.91527 -31.35533 -31.24605 -30.15773 -29.07670 -27.73716 -26.19384 -24.52139 -24.18184 -23.52131 -22.86819 -21.97007 -21.67022 -20.75376 -19.76772 -19.23306 -18.40317 -17.86523 -17.49876 -17.36110 -17.10402 -16.49563 -16.37206 -16.10350 -15.93459 -15.72502 -15.65566 -15.44775 -15.26515 -14.94724 -14.73854 -14.73139 -14.52625 -14.42986 -13.97503 -13.77391 -13.69461 -13.59916 -13.43009 -13.03297 -12.97613 -12.59925 -12.57526 -12.54075 -12.31610 -12.18953 -12.10528 -11.82544 -11.53945 -11.37701 -10.89861 -10.78231 -10.23086 -9.55175 -9.24835 -9.23181 -8.59219 -8.28156 -6.26424 -0.97589 0.08602 0.35123 0.53974 0.72036 1.36068 1.41943 1.54454 1.57690 1.59138 1.79287 2.11861 2.19577 2.68545 2.94635 2.96408 3.01598 3.25674 3.59649 3.63272 3.69703 3.76845 3.89440 4.00643 4.04685 4.08218 4.20344 4.25997 4.29987 4.31534 4.34234 4.49064 4.58065 4.60656 4.70542 4.73457 4.80087 4.84518 4.90644 4.96150 5.02332 5.14790 5.16724 5.25393 5.38126 5.42965 5.52677 5.61990 5.65329 5.68744 5.76670 5.87818 6.11091 6.13379 6.23963 6.44145 6.83967 7.52586 8.61622 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.009212 B = 0.002539 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.922305 B =11024.025280 C =13964.921489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 N -0.464 5.464 4 C 0.118 3.882 5 C -0.210 4.210 6 C 0.072 3.928 7 C -0.105 4.105 8 O -0.219 6.219 9 C 0.182 3.818 10 C -0.263 4.263 11 C 0.186 3.814 12 O -0.194 6.194 13 C -0.420 4.420 14 H 0.112 0.888 15 C -0.011 4.011 16 N -0.903 5.903 17 Si 1.019 2.981 18 H -0.247 1.247 19 H -0.268 1.268 20 H -0.267 1.267 21 C -0.220 4.220 22 C 0.032 3.968 23 C -0.365 4.365 24 C 0.417 3.583 25 O -0.488 6.488 26 C -0.100 4.100 27 C -0.094 4.094 28 C -0.137 4.137 29 C -0.104 4.104 30 C -0.125 4.125 31 C 0.070 3.930 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.279 0.721 41 H 0.140 0.860 42 H 0.153 0.847 43 H 0.135 0.865 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -0.349 27.469 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.144 5.144 4 C -0.016 4.016 5 C -0.217 4.217 6 C 0.052 3.948 7 C -0.149 4.149 8 O -0.128 6.128 9 C 0.136 3.864 10 C -0.283 4.283 11 C 0.131 3.869 12 O -0.096 6.096 13 C -0.495 4.495 14 H 0.129 0.871 15 C -0.212 4.212 16 N -0.538 5.538 17 Si 0.838 3.162 18 H -0.170 1.170 19 H -0.193 1.193 20 H -0.192 1.192 21 C -0.239 4.239 22 C 0.014 3.986 23 C -0.368 4.368 24 C 0.306 3.694 25 O -0.373 6.373 26 C -0.104 4.104 27 C -0.112 4.112 28 C -0.155 4.155 29 C -0.123 4.123 30 C -0.145 4.145 31 C -0.034 4.034 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.199 0.801 38 H 0.195 0.805 39 H 0.159 0.841 40 H 0.088 0.912 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.153 0.847 44 H 0.167 0.833 45 H 0.172 0.828 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.743 -0.462 27.232 27.374 hybrid contribution -0.239 -0.633 -0.810 1.056 sum -2.981 -1.096 26.422 26.612 Atomic orbital electron populations 1.22158 0.93653 1.04277 1.02371 1.22209 0.96118 0.78331 1.06160 1.44188 1.52868 1.13152 1.04144 1.23068 0.95013 0.91414 0.92077 1.19184 1.15916 0.94788 0.91830 1.21350 0.89177 0.98009 0.86227 1.20475 1.13096 0.87344 0.93986 1.84192 1.77417 1.35055 1.16124 1.19160 0.91473 0.93537 0.82264 1.19802 1.17687 1.01671 0.89121 1.19507 0.90406 0.89908 0.87059 1.83961 1.68035 1.25672 1.31959 1.22040 1.40020 0.91518 0.95885 0.87118 1.26662 0.96804 1.03587 0.94141 1.70141 1.44637 1.38228 1.00820 0.84523 0.77666 0.74306 0.79749 1.17025 1.19267 1.19201 1.20145 1.11376 0.91541 1.00878 1.20158 0.90904 0.98829 0.88711 1.20954 1.21155 0.97999 0.96655 1.19119 0.75274 0.86684 0.88324 1.90653 1.41575 1.18254 1.86812 1.19203 1.04312 0.94994 0.91860 1.20762 0.99638 0.98318 0.92507 1.21300 1.00781 0.98229 0.95217 1.21222 0.98324 0.92535 1.00215 1.20389 1.04288 1.01538 0.88269 1.18594 1.04375 0.91148 0.89275 0.88397 0.92096 0.93276 0.87868 0.87116 0.80101 0.80512 0.84149 0.91198 0.84175 0.82929 0.84744 0.83340 0.82754 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 71.98 0.74 -1.18 16 2 C 0.09 1.14 6.66 86.38 0.58 1.71 16 3 N -0.46 -9.11 2.75 -513.74 -1.41 -10.52 16 4 C 0.12 2.85 10.49 84.02 0.88 3.73 16 5 C -0.21 -5.38 6.27 -18.86 -0.12 -5.50 16 6 C 0.07 1.94 10.09 23.87 0.24 2.18 16 7 C -0.10 -3.45 6.76 22.75 0.15 -3.30 16 8 O -0.22 -7.66 7.80 -21.11 -0.16 -7.83 16 9 C 0.18 7.21 7.32 22.95 0.17 7.38 16 10 C -0.26 -11.33 9.18 22.51 0.21 -11.13 16 11 C 0.19 8.77 6.65 22.65 0.15 8.92 16 12 O -0.19 -10.70 9.74 -20.75 -0.20 -10.90 16 13 C -0.42 -22.38 9.48 67.93 0.64 -21.74 16 14 H 0.11 5.37 5.17 -2.91 -0.02 5.36 16 15 C -0.01 -0.59 5.49 84.85 0.47 -0.12 16 16 N -0.90 -51.28 13.67 21.62 0.30 -50.98 16 17 Si 1.02 38.98 29.55 68.60 2.03 41.01 16 18 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 21 C -0.22 -9.05 9.93 22.16 0.22 -8.83 16 22 C 0.03 1.21 10.04 22.19 0.22 1.43 16 23 C -0.36 -14.36 6.37 -20.03 -0.13 -14.49 16 24 C 0.42 15.60 7.55 25.59 0.19 15.80 16 25 O -0.49 -19.30 18.02 -5.33 -0.10 -19.40 16 26 C -0.10 -2.28 6.35 -20.06 -0.13 -2.41 16 27 C -0.09 -1.73 10.09 22.40 0.23 -1.50 16 28 C -0.14 -1.91 10.03 22.28 0.22 -1.69 16 29 C -0.10 -1.31 10.01 22.28 0.22 -1.08 16 30 C -0.12 -1.86 9.96 22.38 0.22 -1.63 16 31 C 0.07 1.41 6.78 38.91 0.26 1.67 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 1.16 8.11 -2.39 -0.02 1.14 16 36 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.18 4.52 6.06 -2.91 -0.02 4.51 16 38 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.14 5.90 5.59 -2.91 -0.02 5.89 16 40 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.14 5.36 8.06 -2.91 -0.02 5.34 16 42 H 0.15 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 45 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 46 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -70.56 400.80 7.14 -63.42 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 1.04 Total: 26.95 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 5.65 Total: -31.77 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -1.12 Total: -61.50 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.46 Total: -38.12 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -70.56 7.14 -63.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028182768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.293 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds