Wall clock time and date at job start Tue Mar 31 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38792 * 120.04753 * 2 1 4 4 C 1.40485 * 119.08519 * 179.97438 * 3 2 1 5 5 C 1.39540 * 120.40039 * 0.04468 * 4 3 2 6 6 C 1.36575 * 119.87031 * 359.97438 * 5 4 3 7 7 C 1.38689 * 120.05252 * 179.97438 * 2 1 3 8 8 O 1.35600 * 119.73693 * 0.02562 * 7 2 1 9 9 C 1.34787 * 117.00005 * 174.38361 * 8 7 2 10 10 H 1.08003 * 120.00151 * 5.06852 * 9 8 7 11 11 C 1.38714 * 120.00378 * 185.06549 * 9 8 7 12 12 N 1.31516 * 119.99559 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00514 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47239 * 59.99340 * 13 11 9 15 15 H 1.48496 * 109.47405 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46592 * 299.99784 * 13 11 9 17 17 C 1.47309 * 106.08292 * 180.02562 * 4 3 2 18 18 O 1.22012 * 127.40309 * 179.97438 * 17 4 3 19 19 C 1.42001 * 105.19526 * 0.02562 * 17 4 3 20 20 C 1.36279 * 125.74519 * 179.97438 * 19 17 4 21 21 C 1.46144 * 120.00103 * 180.02562 * 20 19 17 22 22 C 1.37841 * 126.86604 * 0.02562 * 21 20 19 23 23 N 1.35603 * 109.47607 * 179.97438 * 22 21 20 24 24 C 1.46497 * 124.72630 * 180.02562 * 23 22 21 25 25 C 1.38015 * 110.54255 * 0.02562 * 23 22 21 26 26 C 1.39151 * 132.95868 * 180.02562 * 25 23 22 27 27 C 1.37779 * 119.94847 * 179.97438 * 26 25 23 28 28 C 1.38729 * 120.63518 * 0.02562 * 27 26 25 29 29 C 1.37787 * 120.27943 * 0.02562 * 28 27 26 30 30 C 1.39245 * 119.68198 * 359.67440 * 29 28 27 31 31 O 1.35044 * 132.13370 * 0.02647 * 3 2 1 32 32 H 1.09004 * 109.46600 * 270.00263 * 1 2 3 33 33 H 1.09000 * 109.47378 * 29.99911 * 1 2 3 34 34 H 1.09002 * 109.46799 * 150.00341 * 1 2 3 35 35 H 1.07996 * 120.06523 * 180.02562 * 5 4 3 36 36 H 1.08004 * 119.88897 * 180.02562 * 6 5 4 37 37 H 0.97006 * 119.99944 * 179.97438 * 12 11 9 38 38 H 1.08003 * 119.99802 * 359.97438 * 20 19 17 39 39 H 1.07999 * 125.26098 * 359.97438 * 22 21 20 40 40 H 1.09004 * 109.46950 * 90.03030 * 24 23 22 41 41 H 1.08998 * 109.46646 * 210.02521 * 24 23 22 42 42 H 1.08997 * 109.47539 * 330.02281 * 24 23 22 43 43 H 1.07997 * 120.02356 * 359.97438 * 26 25 23 44 44 H 1.08001 * 119.68185 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.86093 * 179.97438 * 28 27 26 46 46 H 1.07994 * 120.16231 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2020 1.2014 0.0000 4 6 3.6067 1.1778 0.0005 5 6 4.2925 -0.0374 0.0001 6 6 3.5954 -1.2119 -0.0003 7 6 2.2016 -1.2005 0.0005 8 8 1.5193 -2.3723 0.0005 9 6 2.2443 -3.5025 -0.1165 10 1 3.3232 -3.4539 -0.1223 11 6 1.6048 -4.7283 -0.2293 12 7 0.2910 -4.7876 -0.2216 13 14 2.6095 -6.2947 -0.3908 14 1 3.4774 -6.4515 0.8040 15 1 1.6957 -7.4606 -0.4946 16 1 3.4545 -6.2174 -1.6096 17 6 4.0385 2.5862 0.0010 18 8 5.1824 3.0106 0.0020 19 6 2.8374 3.3437 0.0013 20 6 2.7541 4.7040 0.0023 21 6 1.4462 5.3560 0.0031 22 6 0.2141 4.7380 0.0034 23 7 -0.7633 5.6780 0.0047 24 6 -2.1994 5.3888 0.0060 25 6 -0.2164 6.9452 0.0047 26 6 -0.7756 8.2194 0.0062 27 6 0.0411 9.3290 0.0062 28 6 1.4215 9.1908 0.0043 29 6 1.9942 7.9376 0.0017 30 6 1.1805 6.8076 0.0080 31 8 1.7888 2.4871 0.0005 32 1 -0.3633 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 5.3724 -0.0493 0.0010 36 1 4.1259 -2.1526 -0.0001 37 1 -0.1563 -5.6447 -0.3009 38 1 3.6547 5.3001 0.0034 39 1 0.0521 3.6702 0.0028 40 1 -2.5547 5.3172 1.0340 41 1 -2.7316 6.1895 -0.5074 42 1 -2.3804 4.4446 -0.5076 43 1 -1.8490 8.3384 0.0073 44 1 -0.3976 10.3159 0.0069 45 1 2.0499 10.0692 0.0039 46 1 3.0690 7.8321 -0.0002 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028182770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:08 Heat of formation + Delta-G solvation = 28.465543 kcal Electronic energy + Delta-G solvation = -32314.746840 eV Core-core repulsion = 27909.409160 eV Total energy + Delta-G solvation = -4405.337680 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.91655 -41.39952 -39.05239 -37.69625 -37.28904 -36.07970 -34.13279 -32.75041 -32.14395 -31.14642 -30.52022 -29.60072 -28.75785 -26.84442 -26.32435 -25.57338 -24.39174 -22.95496 -22.23048 -21.56965 -21.22978 -19.79827 -19.38698 -18.57658 -17.26392 -16.85345 -16.81549 -16.05605 -15.98741 -15.88692 -15.64201 -15.59330 -14.91577 -14.48248 -14.43727 -14.21820 -14.15065 -14.04060 -13.80169 -13.25867 -13.21978 -13.16991 -13.02674 -12.82214 -12.53150 -12.50737 -12.41626 -12.08146 -11.93110 -11.77478 -11.62815 -11.31553 -11.28410 -11.11975 -11.03678 -10.89319 -10.66863 -10.31442 -9.64780 -9.29540 -9.14699 -9.07615 -8.43237 -8.00601 -7.52201 -7.20249 -6.78197 -4.32083 0.32117 1.00307 1.40924 1.83486 2.08690 2.49741 2.74055 2.94702 3.00467 3.02265 3.08959 3.45915 3.75864 3.76666 4.24636 4.30615 4.41077 4.41285 4.73371 4.78400 4.81018 4.85385 4.90110 4.99621 5.06869 5.14714 5.20187 5.22994 5.34301 5.44101 5.44342 5.58085 5.61042 5.70288 5.79505 5.95304 6.06656 6.10813 6.16312 6.27938 6.30768 6.36127 6.42675 6.50767 6.56084 6.69993 6.75906 6.91131 6.95562 7.01671 7.06946 7.09158 7.18284 7.65559 7.66842 7.90231 8.65803 9.28372 10.37210 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.016988 B = 0.002015 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.866372 B =13889.977954 C =15509.281034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.180 4.180 3 C 0.172 3.828 4 C -0.357 4.357 5 C 0.030 3.970 6 C -0.258 4.258 7 C 0.202 3.798 8 O -0.144 6.144 9 C -0.392 4.392 10 H 0.101 0.899 11 C 0.044 3.956 12 N -0.844 5.844 13 Si 0.947 3.053 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.266 1.266 17 C 0.415 3.585 18 O -0.467 6.467 19 C -0.051 4.051 20 C 0.012 3.988 21 C -0.172 4.172 22 C 0.106 3.894 23 N -0.475 5.475 24 C 0.073 3.927 25 C 0.086 3.914 26 C -0.124 4.124 27 C -0.106 4.106 28 C -0.142 4.142 29 C -0.074 4.074 30 C -0.081 4.081 31 O -0.223 6.223 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.277 0.723 38 H 0.158 0.842 39 H 0.187 0.813 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 20.382 0.180 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.182 4.182 3 C 0.127 3.873 4 C -0.360 4.360 5 C 0.011 3.989 6 C -0.277 4.277 7 C 0.143 3.857 8 O -0.043 6.043 9 C -0.467 4.467 10 H 0.118 0.882 11 C -0.163 4.163 12 N -0.475 5.475 13 Si 0.770 3.230 14 H -0.191 1.191 15 H -0.200 1.200 16 H -0.191 1.191 17 C 0.301 3.699 18 O -0.350 6.350 19 C -0.096 4.096 20 C -0.008 4.008 21 C -0.179 4.179 22 C -0.024 4.024 23 N -0.156 5.156 24 C -0.069 4.069 25 C -0.018 4.018 26 C -0.145 4.145 27 C -0.125 4.125 28 C -0.161 4.161 29 C -0.093 4.093 30 C -0.085 4.085 31 O -0.132 6.132 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.175 0.825 39 H 0.204 0.796 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.601 20.291 0.183 20.807 hybrid contribution 0.435 -0.934 -0.047 1.031 sum -4.166 19.357 0.136 19.801 Atomic orbital electron populations 1.20331 0.90529 1.02095 1.01478 1.17526 0.95832 0.86478 1.18328 1.18718 0.91679 0.82798 0.94151 1.20463 0.94216 0.95327 1.26015 1.19940 0.98909 0.89607 0.90462 1.20846 0.93676 0.98808 1.14385 1.18772 0.90042 0.86339 0.90515 1.83874 1.35459 1.11013 1.73959 1.21545 0.91733 0.81514 1.51958 0.88166 1.25440 0.96259 0.98951 0.95670 1.70003 1.07660 1.27362 1.42521 0.85672 0.78866 0.78795 0.79628 1.19089 1.19990 1.19070 1.19108 0.88162 0.88555 0.74040 1.90669 1.22572 1.79756 1.41967 1.20617 0.87787 0.90830 1.10367 1.20909 0.96078 0.88747 0.95077 1.19085 0.91715 0.90655 1.16443 1.22990 0.86329 0.95039 0.97996 1.43694 1.06654 1.04236 1.60990 1.22069 0.77703 1.03560 1.03524 1.18270 0.92386 0.85775 1.05380 1.20025 0.99457 0.89172 1.05798 1.20770 0.93518 0.97556 1.00627 1.20910 0.94838 0.96890 1.03478 1.20503 0.99363 0.90672 0.98736 1.19011 0.92025 0.92574 1.04859 1.84169 1.32063 1.13586 1.83353 0.92481 0.93054 0.90688 0.86232 0.84324 0.91291 0.82505 0.79573 0.90764 0.89904 0.89233 0.86403 0.85801 0.85878 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.79 36.01 0.35 -1.23 16 2 C -0.18 -3.67 5.91 -104.25 -0.62 -4.29 16 3 C 0.17 3.33 6.99 -38.53 -0.27 3.06 16 4 C -0.36 -7.09 6.37 -104.88 -0.67 -7.76 16 5 C 0.03 0.57 10.04 -39.70 -0.40 0.17 16 6 C -0.26 -5.33 9.10 -39.76 -0.36 -5.69 16 7 C 0.20 4.54 6.62 -38.99 -0.26 4.29 16 8 O -0.14 -3.68 8.76 0.63 0.01 -3.67 16 9 C -0.39 -9.90 9.48 30.91 0.29 -9.60 16 10 H 0.10 2.31 5.17 -52.48 -0.27 2.04 16 11 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 12 N -0.84 -22.38 13.67 55.48 0.76 -21.62 16 13 Si 0.95 18.67 29.55 -169.99 -5.02 13.64 16 14 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 15 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 17 C 0.41 7.86 7.55 -34.45 -0.26 7.60 16 18 O -0.47 -9.45 18.02 4.91 0.09 -9.36 16 19 C -0.05 -0.85 6.76 -38.85 -0.26 -1.11 16 20 C 0.01 0.17 10.09 -37.12 -0.37 -0.21 16 21 C -0.17 -2.31 6.27 -103.06 -0.65 -2.96 16 22 C 0.11 1.32 10.51 -16.03 -0.17 1.15 16 23 N -0.48 -5.05 3.15 -121.11 -0.38 -5.43 16 24 C 0.07 0.48 10.98 59.85 0.66 1.14 16 25 C 0.09 0.98 6.78 -83.94 -0.57 0.41 16 26 C -0.12 -1.14 9.89 -39.41 -0.39 -1.53 16 27 C -0.11 -0.88 10.01 -39.57 -0.40 -1.28 16 28 C -0.14 -1.26 10.03 -39.56 -0.40 -1.65 16 29 C -0.07 -0.78 10.09 -39.37 -0.40 -1.18 16 30 C -0.08 -1.00 6.35 -104.92 -0.67 -1.67 16 31 O -0.22 -3.82 7.80 0.48 0.00 -3.82 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.07 1.48 7.52 -51.93 -0.39 1.09 16 35 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.14 2.74 5.60 -52.48 -0.29 2.45 16 37 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.16 1.92 8.06 -52.48 -0.42 1.49 16 39 H 0.19 2.28 6.06 -52.49 -0.32 1.97 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.41 7.98 -51.93 -0.41 0.00 16 42 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 43 H 0.12 0.81 7.98 -52.49 -0.42 0.39 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -30.63 398.77 -9.48 -40.11 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.04 Total: 5.46 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -5.89 Total: -21.32 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.38 Total: -27.05 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.10 Total: -16.85 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.63 -9.48 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028182770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.575 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds